Wall clock time and date at job start Tue Mar 31 2020 00:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21543 * 119.99852 * 0.02562 * 14 13 3 16 16 C 1.47929 * 119.99906 * 179.97438 * 14 13 3 17 17 C 1.33750 * 125.55213 * 180.02562 * 16 14 13 18 18 C 1.50985 * 130.87107 * 358.98949 * 17 16 14 19 19 C 1.53845 * 106.39787 * 204.20990 * 18 17 16 20 20 C 1.52636 * 110.21300 * 306.83708 * 19 18 17 21 21 N 1.46650 * 111.72489 * 61.07475 * 20 19 18 22 22 C 1.30354 * 119.16809 * 326.10330 * 21 20 19 23 23 N 1.37109 * 131.39650 * 183.26086 * 22 21 20 24 24 N 1.38669 * 125.55535 * 359.69427 * 16 14 13 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.09004 * 110.06238 * 323.43586 * 18 17 16 33 33 H 1.08999 * 110.06193 * 84.98651 * 18 17 16 34 34 H 1.09006 * 109.34377 * 67.06900 * 19 18 17 35 35 H 1.09007 * 109.34338 * 186.60923 * 19 18 17 36 36 H 1.08993 * 109.03418 * 181.65499 * 20 19 18 37 37 H 1.09000 * 109.02925 * 300.57792 * 20 19 18 38 38 H 0.97003 * 126.23487 * 357.63341 * 23 22 21 39 39 H 0.96998 * 125.32892 * 359.64517 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3413 2.6318 0.4325 16 6 0.0436 3.3251 2.6313 17 6 -1.1310 3.9200 2.8666 18 6 -2.3363 4.1129 1.9779 19 6 -3.0889 5.3374 2.5267 20 6 -3.3701 5.1596 4.0163 21 7 -2.1316 5.0324 4.7912 22 6 -1.1055 4.4333 4.2550 23 7 0.1316 4.1269 4.7606 24 7 0.8322 3.4231 3.7678 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -2.0185 4.2981 0.9518 33 1 -2.9760 3.2314 2.0190 34 1 -2.4822 6.2307 2.3777 35 1 -4.0321 5.4509 1.9921 36 1 -3.9286 6.0228 4.3781 37 1 -3.9715 4.2619 4.1598 38 1 0.4616 4.3522 5.6446 39 1 1.7283 3.0640 3.8613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556106911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:43 Heat of formation + Delta-G solvation = 30.508139 kcal Electronic energy + Delta-G solvation = -21980.063591 eV Core-core repulsion = 18730.635022 eV Total energy + Delta-G solvation = -3249.428569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.13440 -40.36530 -37.72595 -37.02124 -34.43668 -34.01553 -32.80276 -31.31504 -30.93028 -28.97987 -26.38591 -25.41529 -24.22306 -23.49229 -21.65865 -21.02747 -19.85997 -19.44092 -18.65821 -17.60173 -17.20984 -16.80476 -16.30093 -16.22248 -16.06237 -15.48883 -14.98551 -14.73884 -14.57493 -14.23023 -14.02417 -13.86652 -13.47616 -13.17328 -13.07839 -12.90661 -12.64828 -12.42427 -12.20513 -12.07324 -11.99497 -11.58995 -11.47054 -11.12652 -11.05072 -10.52404 -10.29002 -9.83689 -9.73159 -8.15239 -8.10382 -6.32399 0.07782 0.79601 1.47576 1.48315 1.55891 1.75025 2.19199 2.32420 2.47203 2.82625 3.15203 3.49029 3.88858 4.05299 4.17177 4.29061 4.37957 4.52137 4.59328 4.72013 4.77853 4.82120 4.90219 5.04738 5.07825 5.16781 5.23616 5.28445 5.34657 5.43105 5.47322 5.59152 5.64827 5.80928 5.89654 6.16285 6.18164 6.71926 6.77967 6.83529 7.24852 7.34150 7.42344 8.89702 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029600 B = 0.004336 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.718964 B = 6455.723214 C = 6956.950580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.075 0.925 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.691 5.691 14 C 0.568 3.432 15 O -0.545 6.545 16 C 0.129 3.871 17 C -0.230 4.230 18 C -0.039 4.039 19 C -0.138 4.138 20 C 0.075 3.925 21 N -0.636 5.636 22 C 0.416 3.584 23 N -0.481 5.481 24 N -0.499 5.499 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.461 0.539 39 H 0.456 0.544 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 5.419 12.657 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.093 0.907 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.339 5.339 14 C 0.351 3.649 15 O -0.422 6.422 16 C 0.014 3.986 17 C -0.248 4.248 18 C -0.077 4.077 19 C -0.177 4.177 20 C -0.055 4.055 21 N -0.371 5.371 22 C 0.141 3.859 23 N -0.219 5.219 24 N -0.229 5.229 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.312 0.688 39 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -5.785 5.675 12.675 15.044 hybrid contribution 1.803 -0.485 -0.528 1.940 sum -3.982 5.190 12.147 13.797 Atomic orbital electron populations 1.21706 0.96937 0.99333 1.00391 1.21804 0.93745 0.98957 1.01576 1.18481 0.93849 0.89267 0.80767 0.97451 1.21515 0.91224 1.39200 1.06839 0.90740 1.25691 1.02933 0.94391 0.95078 1.70021 1.37058 1.38109 1.09810 0.85482 0.79506 0.78351 0.77488 1.18940 1.21519 1.19796 1.46200 1.14491 1.55133 1.18109 1.17605 0.82764 0.78964 0.85534 1.90799 1.52239 1.59968 1.39224 1.19751 0.92425 0.99610 0.86794 1.21782 0.97412 1.08149 0.97410 1.20164 0.92052 0.98489 0.97013 1.21983 1.01447 0.97083 0.97189 1.21805 0.91029 1.01775 0.90868 1.72158 1.00444 1.29446 1.35077 1.19982 0.86814 0.91145 0.87960 1.42903 1.10002 1.56983 1.11971 1.43812 1.16514 1.57109 1.05429 0.93848 0.93659 0.95090 0.93857 0.90807 0.92581 0.76243 0.90995 0.90736 0.92671 0.88808 0.89194 0.92333 0.68794 0.69422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 8.51 71.98 0.61 -4.69 16 2 C -0.12 -5.57 5.45 30.59 0.17 -5.40 16 3 C 0.28 13.09 2.24 44.24 0.10 13.19 16 4 H 0.01 0.43 7.58 -2.39 -0.02 0.41 16 5 C -0.55 -26.81 8.73 25.60 0.22 -26.59 16 6 H 0.07 3.34 7.74 -2.91 -0.02 3.31 16 7 C 0.02 1.00 5.29 84.66 0.45 1.45 16 8 N -0.91 -49.55 11.29 21.45 0.24 -49.31 16 9 Si 0.97 39.78 29.54 68.60 2.03 41.81 16 10 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 N -0.69 -25.18 5.02 -448.91 -2.25 -27.43 16 14 C 0.57 20.71 6.40 86.81 0.56 21.26 16 15 O -0.55 -23.64 12.48 -3.85 -0.05 -23.69 16 16 C 0.13 3.82 7.01 39.61 0.28 4.10 16 17 C -0.23 -6.94 6.06 -18.19 -0.11 -7.05 16 18 C -0.04 -1.13 5.74 30.22 0.17 -0.95 16 19 C -0.14 -3.30 5.96 30.76 0.18 -3.12 16 20 C 0.08 1.83 6.93 86.23 0.60 2.43 16 21 N -0.64 -18.07 11.06 -339.70 -3.76 -21.83 16 22 C 0.42 11.45 8.35 136.69 1.14 12.59 16 23 N -0.48 -9.91 7.49 -51.52 -0.39 -10.29 16 24 N -0.50 -10.54 7.34 -48.89 -0.36 -10.90 16 25 H 0.04 1.75 5.64 -2.39 -0.01 1.74 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.03 1.40 7.84 -2.38 -0.02 1.38 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 3.83 5.95 -2.39 -0.01 3.81 16 30 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 31 H 0.40 11.70 7.63 -92.71 -0.71 10.99 16 32 H 0.07 2.32 7.23 -2.38 -0.02 2.30 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.46 6.32 8.96 -213.11 -1.91 4.41 16 39 H 0.46 6.68 8.15 -213.11 -1.74 4.94 16 Total: -1.00 -63.97 314.25 -3.41 -67.38 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -3.24 Total: 27.05 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 4.37 Total: 7.22 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.51 Total: -119.76 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -63.97 -3.41 -67.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.891 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds