Wall clock time and date at job start Tue Mar 31 2020 00:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52992 * 109.47068 * 2 1 4 4 H 1.08998 * 109.47276 * 55.00063 * 3 2 1 5 5 C 1.50700 * 109.47017 * 175.00035 * 3 2 1 6 6 H 1.08006 * 120.00348 * 119.99934 * 5 3 2 7 7 C 1.37871 * 119.99945 * 299.99965 * 5 3 2 8 8 N 1.31512 * 120.00212 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00165 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47369 * 119.99811 * 9 7 5 12 12 H 1.48503 * 109.47221 * 240.00256 * 9 7 5 13 13 N 1.46510 * 109.47437 * 294.99793 * 3 2 1 14 14 C 1.34781 * 119.99654 * 84.99838 * 13 3 2 15 15 O 1.21532 * 120.00013 * 0.02562 * 14 13 3 16 16 C 1.47920 * 119.99740 * 180.02562 * 14 13 3 17 17 C 1.33755 * 125.55602 * 180.02562 * 16 14 13 18 18 C 1.50975 * 130.82865 * 359.01794 * 17 16 14 19 19 C 1.53838 * 106.45770 * 204.48273 * 18 17 16 20 20 C 1.52645 * 110.22017 * 307.01407 * 19 18 17 21 21 N 1.46658 * 111.69270 * 61.11770 * 20 19 18 22 22 C 1.30345 * 119.14688 * 325.27856 * 21 20 19 23 23 N 1.37105 * 131.44018 * 183.15374 * 22 21 20 24 24 N 1.38668 * 125.55225 * 0.02562 * 16 14 13 25 25 H 1.08997 * 109.46784 * 300.00676 * 1 2 3 26 26 H 1.09005 * 109.46607 * 59.99864 * 1 2 3 27 27 H 1.08996 * 109.47404 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46466 * 239.99758 * 2 1 3 29 29 H 1.08996 * 109.46502 * 120.00094 * 2 1 3 30 30 H 0.97001 * 120.00060 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00153 * 265.00492 * 13 3 2 32 32 H 1.09004 * 110.05527 * 323.71572 * 18 17 16 33 33 H 1.09001 * 110.05280 * 85.24324 * 18 17 16 34 34 H 1.09002 * 109.34365 * 67.24240 * 19 18 17 35 35 H 1.09000 * 109.34448 * 186.78472 * 19 18 17 36 36 H 1.08998 * 109.04026 * 181.68648 * 20 19 18 37 37 H 1.08998 * 109.04198 * 300.62572 * 20 19 18 38 38 H 0.97004 * 126.21592 * 359.11376 * 23 22 21 39 39 H 0.97004 * 125.33263 * 359.58227 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1474 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3374 2.1733 9 14 6.0050 0.8799 1.3811 10 1 6.5989 1.5451 0.1936 11 1 6.4001 1.6156 2.6091 12 1 6.4962 -0.5192 1.4626 13 7 1.6526 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3408 2.6326 -0.4322 16 6 0.0437 3.3253 -2.6311 17 6 -1.1306 3.9210 -2.8661 18 6 -2.3496 4.0801 -1.9898 19 6 -3.5465 4.2677 -2.9379 20 6 -3.2673 5.4004 -3.9222 21 7 -2.0965 5.1158 -4.7584 22 6 -1.0942 4.4595 -4.2450 23 7 0.1251 4.1114 -4.7665 24 7 0.8344 3.4282 -3.7657 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9979 32 1 -2.4915 3.1870 -1.3811 33 1 -2.2385 4.9557 -1.3503 34 1 -3.7181 3.3436 -3.4899 35 1 -4.4353 4.5074 -2.3542 36 1 -4.1378 5.5365 -4.5639 37 1 -3.0895 6.3201 -3.3649 38 1 0.4417 4.3057 -5.6626 39 1 1.7363 3.0822 -3.8542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556106912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:51 Heat of formation + Delta-G solvation = 51.481279 kcal Electronic energy + Delta-G solvation = -21984.737060 eV Core-core repulsion = 18736.217954 eV Total energy + Delta-G solvation = -3248.519106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.96278 -38.86857 -36.66137 -35.29167 -32.98826 -32.50632 -31.12063 -30.22684 -29.77056 -27.17945 -25.24421 -23.80821 -22.72140 -22.35423 -19.97272 -19.48381 -18.77303 -18.34013 -17.11717 -16.08940 -15.63401 -15.45559 -15.12505 -14.80238 -14.42520 -14.22172 -13.70391 -13.36554 -13.12000 -12.97472 -12.77791 -12.20982 -11.97693 -11.66144 -11.36806 -11.35633 -11.08064 -10.95512 -10.95178 -10.43319 -10.41913 -10.31182 -9.77762 -9.53989 -9.18458 -9.15154 -8.70484 -8.62074 -8.07216 -7.04044 -6.23523 -4.33945 1.33218 1.78426 2.94077 3.16486 3.24793 3.26384 3.66033 3.70878 3.90981 4.25738 4.65308 5.07357 5.08599 5.17020 5.21647 5.29952 5.49430 5.78552 5.88107 5.98368 6.06330 6.14826 6.29522 6.34033 6.35963 6.41219 6.54021 6.73041 6.92660 7.06533 7.14164 7.25064 7.26304 7.48795 7.58015 7.72135 7.75582 8.04198 8.35458 8.39737 8.59180 8.82213 9.33450 10.81739 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.004354 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.459184 B = 6428.824966 C = 6997.481783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.697 5.697 14 C 0.565 3.435 15 O -0.513 6.513 16 C 0.133 3.867 17 C -0.216 4.216 18 C -0.037 4.037 19 C -0.147 4.147 20 C 0.080 3.920 21 N -0.620 5.620 22 C 0.424 3.576 23 N -0.499 5.499 24 N -0.517 5.517 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.025 0.975 28 H 0.032 0.968 29 H 0.102 0.898 30 H 0.265 0.735 31 H 0.385 0.615 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.444 0.556 39 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 4.803 -10.738 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.345 5.345 14 C 0.347 3.653 15 O -0.388 6.388 16 C 0.020 3.980 17 C -0.233 4.233 18 C -0.075 4.075 19 C -0.186 4.186 20 C -0.051 4.051 21 N -0.354 5.354 22 C 0.150 3.850 23 N -0.234 5.234 24 N -0.245 5.245 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.217 0.783 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.292 0.708 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -6.598 5.036 -10.694 13.537 hybrid contribution 2.032 -0.440 -0.094 2.081 sum -4.566 4.596 -10.788 12.583 Atomic orbital electron populations 1.21862 0.98215 0.98388 1.01231 1.21953 0.92713 0.99508 1.02525 1.18921 0.94547 0.89312 0.80346 0.92782 1.21209 0.90424 1.39490 1.06531 0.92019 1.24869 0.98705 0.94640 0.95300 1.69889 1.35162 1.37279 1.09294 0.86391 0.84660 0.77840 0.78187 1.19784 1.20799 1.20811 1.46542 1.13782 1.55256 1.18900 1.17343 0.83491 0.79570 0.84904 1.90806 1.51292 1.59193 1.37525 1.20331 0.91759 0.98876 0.87060 1.21493 0.96953 1.07847 0.97048 1.20162 0.88959 1.03169 0.95168 1.22042 0.98357 0.99853 0.98351 1.21700 0.92865 0.96855 0.93669 1.72173 1.02197 1.27659 1.33328 1.19890 0.85884 0.91264 0.88012 1.42889 1.11856 1.58645 1.10043 1.43937 1.15291 1.59587 1.05717 0.92932 0.94379 0.95601 0.94924 0.88033 0.92451 0.78294 0.89189 0.90737 0.91906 0.91071 0.90618 0.92678 0.70847 0.71263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.24 2.24 -69.08 -0.15 6.09 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.21 8.73 -34.44 -0.30 -13.51 16 6 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.39 11.29 55.43 0.63 -22.76 16 9 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.70 -12.90 5.02 -55.85 -0.28 -13.18 16 14 C 0.57 10.36 6.40 -12.29 -0.08 10.28 16 15 O -0.51 -10.86 12.47 5.34 0.07 -10.79 16 16 C 0.13 2.05 7.01 -82.38 -0.58 1.47 16 17 C -0.22 -3.38 6.06 -102.03 -0.62 -4.00 16 18 C -0.04 -0.53 5.75 -27.31 -0.16 -0.69 16 19 C -0.15 -1.85 5.97 -26.48 -0.16 -2.00 16 20 C 0.08 1.04 6.93 -4.14 -0.03 1.01 16 21 N -0.62 -9.39 11.06 -58.71 -0.65 -10.03 16 22 C 0.42 6.23 8.36 -154.87 -1.29 4.94 16 23 N -0.50 -5.79 7.49 32.37 0.24 -5.55 16 24 N -0.52 -6.08 7.34 33.19 0.24 -5.84 16 25 H 0.05 1.16 7.84 -51.93 -0.41 0.76 16 26 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.38 5.93 7.63 -40.82 -0.31 5.62 16 32 H 0.09 1.41 7.21 -51.93 -0.37 1.04 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.44 3.72 8.96 -182.35 -1.63 2.09 16 39 H 0.44 3.88 8.15 -182.35 -1.49 2.40 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -29.59 314.22 -11.04 -40.63 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.71 Total: 8.63 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.29 Total: -0.42 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.18 Total: -57.36 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.59 -11.04 -40.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.110 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds