Wall clock time and date at job start Tue Mar 31 2020 00:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52992 * 109.47068 * 2 1 4 4 H 1.08998 * 109.47276 * 55.00063 * 3 2 1 5 5 C 1.50700 * 109.47017 * 175.00035 * 3 2 1 6 6 H 1.08006 * 120.00348 * 119.99934 * 5 3 2 7 7 C 1.37871 * 119.99945 * 299.99965 * 5 3 2 8 8 N 1.31512 * 120.00212 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00165 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47369 * 119.99811 * 9 7 5 12 12 H 1.48503 * 109.47221 * 240.00256 * 9 7 5 13 13 N 1.46510 * 109.47437 * 294.99793 * 3 2 1 14 14 C 1.34781 * 119.99654 * 84.99838 * 13 3 2 15 15 O 1.21532 * 120.00013 * 0.02562 * 14 13 3 16 16 C 1.47920 * 119.99740 * 180.02562 * 14 13 3 17 17 C 1.33755 * 125.55602 * 180.02562 * 16 14 13 18 18 C 1.50975 * 130.82865 * 359.01794 * 17 16 14 19 19 C 1.53838 * 106.45770 * 204.48273 * 18 17 16 20 20 C 1.52645 * 110.22017 * 307.01407 * 19 18 17 21 21 N 1.46658 * 111.69270 * 61.11770 * 20 19 18 22 22 C 1.30345 * 119.14688 * 325.27856 * 21 20 19 23 23 N 1.37105 * 131.44018 * 183.15374 * 22 21 20 24 24 N 1.38668 * 125.55225 * 0.02562 * 16 14 13 25 25 H 1.08997 * 109.46784 * 300.00676 * 1 2 3 26 26 H 1.09005 * 109.46607 * 59.99864 * 1 2 3 27 27 H 1.08996 * 109.47404 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46466 * 239.99758 * 2 1 3 29 29 H 1.08996 * 109.46502 * 120.00094 * 2 1 3 30 30 H 0.97001 * 120.00060 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00153 * 265.00492 * 13 3 2 32 32 H 1.09004 * 110.05527 * 323.71572 * 18 17 16 33 33 H 1.09001 * 110.05280 * 85.24324 * 18 17 16 34 34 H 1.09002 * 109.34365 * 67.24240 * 19 18 17 35 35 H 1.09000 * 109.34448 * 186.78472 * 19 18 17 36 36 H 1.08998 * 109.04026 * 181.68648 * 20 19 18 37 37 H 1.08998 * 109.04198 * 300.62572 * 20 19 18 38 38 H 0.97004 * 126.21592 * 359.11376 * 23 22 21 39 39 H 0.97004 * 125.33263 * 359.58227 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1474 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3374 2.1733 9 14 6.0050 0.8799 1.3811 10 1 6.5989 1.5451 0.1936 11 1 6.4001 1.6156 2.6091 12 1 6.4962 -0.5192 1.4626 13 7 1.6526 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3408 2.6326 -0.4322 16 6 0.0437 3.3253 -2.6311 17 6 -1.1306 3.9210 -2.8661 18 6 -2.3496 4.0801 -1.9898 19 6 -3.5465 4.2677 -2.9379 20 6 -3.2673 5.4004 -3.9222 21 7 -2.0965 5.1158 -4.7584 22 6 -1.0942 4.4595 -4.2450 23 7 0.1251 4.1114 -4.7665 24 7 0.8344 3.4282 -3.7657 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9979 32 1 -2.4915 3.1870 -1.3811 33 1 -2.2385 4.9557 -1.3503 34 1 -3.7181 3.3436 -3.4899 35 1 -4.4353 4.5074 -2.3542 36 1 -4.1378 5.5365 -4.5639 37 1 -3.0895 6.3201 -3.3649 38 1 0.4417 4.3057 -5.6626 39 1 1.7363 3.0822 -3.8542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556106912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:46 Heat of formation + Delta-G solvation = 30.401283 kcal Electronic energy + Delta-G solvation = -21985.651157 eV Core-core repulsion = 18736.217954 eV Total energy + Delta-G solvation = -3249.433203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.34 seconds Orbital eigenvalues (eV) -42.13513 -40.36640 -37.72438 -37.02354 -34.43793 -34.01631 -32.80674 -31.31611 -30.92855 -28.98362 -26.38571 -25.42097 -24.22261 -23.48933 -21.66240 -21.02795 -19.85825 -19.44646 -18.66140 -17.59683 -17.20582 -16.80323 -16.38735 -16.20338 -15.99524 -15.46283 -15.06847 -14.66797 -14.59308 -14.23844 -14.07684 -13.81973 -13.48696 -13.18758 -13.07752 -12.87419 -12.70873 -12.42032 -12.16068 -12.07307 -11.99636 -11.60196 -11.46902 -11.11779 -11.03912 -10.54090 -10.29013 -9.82271 -9.74168 -8.15782 -8.10471 -6.32663 0.07751 0.79587 1.45456 1.47969 1.57916 1.75026 2.19019 2.32561 2.46795 2.82557 3.15002 3.49022 3.88799 4.05430 4.17497 4.29238 4.38009 4.51954 4.58969 4.72058 4.77531 4.81992 4.90387 5.04810 5.07618 5.16969 5.23596 5.28318 5.34844 5.42996 5.47168 5.59376 5.64771 5.80754 5.89471 6.16161 6.18130 6.72186 6.77918 6.83441 7.24836 7.34129 7.42209 8.89609 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.004354 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.459184 B = 6428.824966 C = 6997.481783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.008 0.992 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.691 5.691 14 C 0.568 3.432 15 O -0.545 6.545 16 C 0.129 3.871 17 C -0.230 4.230 18 C -0.040 4.040 19 C -0.138 4.138 20 C 0.075 3.925 21 N -0.636 5.636 22 C 0.416 3.584 23 N -0.481 5.481 24 N -0.499 5.499 25 H 0.030 0.970 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.403 0.597 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.461 0.539 39 H 0.456 0.544 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 5.222 -12.771 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.026 0.974 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.339 5.339 14 C 0.351 3.649 15 O -0.422 6.422 16 C 0.014 3.986 17 C -0.248 4.248 18 C -0.078 4.078 19 C -0.176 4.176 20 C -0.055 4.055 21 N -0.371 5.371 22 C 0.141 3.859 23 N -0.218 5.218 24 N -0.229 5.229 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.312 0.688 39 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -5.897 5.462 -12.805 15.119 hybrid contribution 1.784 -0.537 0.537 1.939 sum -4.113 4.924 -12.268 13.845 Atomic orbital electron populations 1.21708 0.96947 0.99334 1.00384 1.21805 0.93744 0.98959 1.01577 1.18491 0.93884 0.89267 0.80783 0.97419 1.21573 0.91210 1.38990 1.06776 0.90721 1.25691 1.02927 0.94425 0.95105 1.70037 1.36905 1.38246 1.09853 0.85377 0.79547 0.77690 0.78175 1.18371 1.21322 1.20697 1.46202 1.14462 1.55165 1.18108 1.17601 0.82777 0.78925 0.85551 1.90795 1.52136 1.60183 1.39109 1.19753 0.92409 0.99447 0.86974 1.21785 0.97172 1.07831 0.97969 1.20164 0.89905 1.02269 0.95428 1.21976 0.98236 0.99461 0.97966 1.21810 0.92828 0.96942 0.93925 1.72158 1.02848 1.28051 1.34082 1.19988 0.86735 0.91535 0.87639 1.42899 1.10922 1.57648 1.10371 1.43812 1.15451 1.58808 1.04792 0.95069 0.93870 0.93660 0.93849 0.90812 0.92601 0.76242 0.90853 0.90913 0.92562 0.88831 0.89140 0.92444 0.68791 0.69418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 8.51 71.99 0.61 -4.69 16 2 C -0.12 -5.56 5.45 30.60 0.17 -5.40 16 3 C 0.28 13.05 2.24 44.24 0.10 13.15 16 4 H 0.01 0.44 7.58 -2.39 -0.02 0.43 16 5 C -0.55 -26.68 8.73 25.60 0.22 -26.45 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.97 5.29 84.65 0.45 1.41 16 8 N -0.91 -49.54 11.29 21.44 0.24 -49.30 16 9 Si 0.97 39.82 29.54 68.60 2.03 41.84 16 10 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 13 N -0.69 -25.16 5.02 -448.91 -2.25 -27.41 16 14 C 0.57 20.69 6.40 86.81 0.56 21.25 16 15 O -0.55 -23.62 12.47 -3.82 -0.05 -23.67 16 16 C 0.13 3.81 7.01 39.61 0.28 4.09 16 17 C -0.23 -6.94 6.06 -18.19 -0.11 -7.05 16 18 C -0.04 -1.14 5.75 30.22 0.17 -0.97 16 19 C -0.14 -3.27 5.97 30.76 0.18 -3.09 16 20 C 0.08 1.83 6.93 86.23 0.60 2.43 16 21 N -0.64 -18.08 11.06 -339.66 -3.76 -21.84 16 22 C 0.42 11.45 8.36 136.70 1.14 12.59 16 23 N -0.48 -9.90 7.49 -51.51 -0.39 -10.29 16 24 N -0.50 -10.53 7.34 -48.90 -0.36 -10.89 16 25 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 26 H 0.04 1.74 5.65 -2.38 -0.01 1.73 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 3.83 5.95 -2.39 -0.01 3.81 16 30 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.40 11.70 7.63 -92.71 -0.71 10.99 16 32 H 0.07 2.35 7.21 -2.38 -0.02 2.33 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.46 6.31 8.96 -213.11 -1.91 4.40 16 39 H 0.46 6.68 8.15 -213.11 -1.74 4.95 16 Total: -1.00 -64.01 314.22 -3.41 -67.42 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -3.24 Total: 26.85 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 4.37 Total: 7.28 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -6.51 Total: -119.73 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.84 kcal Total: -64.01 -3.41 -67.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.818 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.34 seconds