Wall clock time and date at job start Tue Mar 31 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47479 * 2 1 4 4 C 1.52997 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47493 * 305.00383 * 4 3 2 6 6 C 1.53001 * 109.47212 * 185.00080 * 4 3 2 7 7 C 1.53001 * 109.47243 * 59.85867 * 6 4 3 8 8 S 1.81406 * 109.47129 * 65.00292 * 4 3 2 9 9 C 1.81408 * 102.99701 * 185.62453 * 8 4 3 10 10 C 1.50700 * 109.46456 * 175.00135 * 9 8 4 11 11 C 1.38634 * 119.74931 * 90.00636 * 10 9 8 12 12 C 1.37617 * 120.24875 * 180.27544 * 11 10 9 13 13 C 1.40722 * 119.74669 * 359.51170 * 12 11 10 14 14 C 1.41392 * 120.24742 * 180.23382 * 13 12 11 15 15 H 1.08001 * 120.00154 * 157.72664 * 14 13 12 16 16 C 1.39940 * 119.99993 * 337.72958 * 14 13 12 17 17 N 1.30820 * 120.00302 * 331.40341 * 16 14 13 18 18 Si 1.86805 * 120.00122 * 151.40292 * 16 14 13 19 19 H 1.48497 * 109.47184 * 94.98725 * 18 16 14 20 20 H 1.48505 * 109.47076 * 214.98654 * 18 16 14 21 21 H 1.48501 * 109.47068 * 334.98360 * 18 16 14 22 22 C 1.40722 * 119.50737 * 0.47852 * 13 12 11 23 23 C 1.37616 * 119.74165 * 359.75611 * 22 13 12 24 24 H 1.08996 * 109.47512 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46588 * 300.00067 * 1 2 3 26 26 H 1.09005 * 109.46790 * 59.99305 * 1 2 3 27 27 H 1.09003 * 109.46588 * 239.99933 * 2 1 3 28 28 H 1.08999 * 109.47141 * 120.00909 * 2 1 3 29 29 H 1.08996 * 109.46634 * 60.00355 * 3 2 1 30 30 H 1.09002 * 109.46967 * 300.00001 * 3 2 1 31 31 H 1.08994 * 109.47351 * 179.85937 * 6 4 3 32 32 H 1.09003 * 109.47038 * 299.85759 * 6 4 3 33 33 H 1.09000 * 109.46913 * 294.11830 * 7 6 4 34 34 H 1.09003 * 109.46814 * 54.11165 * 7 6 4 35 35 H 1.08993 * 109.47735 * 174.11716 * 7 6 4 36 36 H 1.09002 * 109.47096 * 55.00605 * 9 8 4 37 37 H 1.08991 * 109.47192 * 294.99813 * 9 8 4 38 38 H 1.08002 * 119.87599 * 359.97438 * 11 10 9 39 39 H 1.07999 * 120.12975 * 179.71909 * 12 11 10 40 40 H 0.96998 * 120.00874 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.12406 * 179.73144 * 22 13 12 42 42 H 1.08007 * 119.87230 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8526 0.8409 6 6 4.0803 2.8792 0.1251 7 6 3.5680 3.4899 1.4311 8 16 4.1740 0.7197 -1.5511 9 6 5.9686 0.6478 -1.2959 10 6 6.6144 -0.0512 -2.4644 11 6 7.0319 0.6860 -3.5618 12 6 7.6177 0.0576 -4.6368 13 6 7.8016 -1.3374 -4.6150 14 6 8.4068 -1.9933 -5.7117 15 1 8.8714 -2.9585 -5.5743 16 6 8.4039 -1.3917 -6.9752 17 7 7.4387 -0.5738 -7.3080 18 14 9.7783 -1.7565 -8.1866 19 1 9.3575 -2.8511 -9.0976 20 1 10.0743 -0.5374 -8.9812 21 1 10.9956 -2.1710 -7.4439 22 6 7.3741 -2.0754 -3.4957 23 6 6.7863 -1.4265 -2.4340 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 1.6768 1.9562 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 5.1702 2.8790 0.1272 32 1 3.7187 3.4682 -0.7178 33 1 2.4832 3.5864 1.3860 34 1 3.8409 2.8441 2.2657 35 1 4.0147 4.4741 1.5719 36 1 6.1835 0.0979 -0.3796 37 1 6.3648 1.6598 -1.2137 38 1 6.8925 1.7569 -3.5751 39 1 7.9381 0.6332 -5.4926 40 1 7.4368 -0.1565 -8.1836 41 1 7.5064 -3.1470 -3.4702 42 1 6.4570 -1.9909 -1.5740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559407825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:40 Heat of formation + Delta-G solvation = -25.915064 kcal Electronic energy + Delta-G solvation = -18652.963640 eV Core-core repulsion = 15915.088841 eV Total energy + Delta-G solvation = -2737.874800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -37.60930 -36.80500 -34.03920 -33.32192 -31.24121 -29.32614 -28.56636 -27.58659 -25.06459 -23.75666 -21.51312 -21.07344 -20.64944 -19.96063 -17.34934 -16.34480 -15.41859 -15.20538 -14.87248 -14.33686 -14.21980 -14.01451 -13.81795 -13.42185 -13.30333 -12.69263 -12.54499 -12.26695 -12.09864 -11.98164 -11.88456 -11.62888 -11.47553 -11.23284 -11.09896 -10.96709 -10.77223 -10.73122 -10.62249 -10.48631 -10.31744 -9.68952 -9.44378 -9.27508 -9.03690 -7.49560 -7.37541 -7.11286 -6.91734 -4.36023 1.97897 2.77955 3.02512 3.04086 3.06404 3.11690 3.43535 3.87374 4.53653 4.62293 4.79948 5.03527 5.12085 5.18666 5.29080 5.40716 5.57615 5.59491 5.63103 5.64818 5.71747 5.81176 5.83457 5.90164 5.92731 5.99390 6.13701 6.16713 6.24022 6.30728 6.33793 6.36810 6.41055 6.91891 6.99809 7.20416 7.30131 7.56588 7.81329 7.98908 8.06787 8.23439 8.56528 8.81752 8.92431 10.03415 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028336 B = 0.003380 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.889184 B = 8283.256722 C = 8598.190984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.097 4.097 4 C -0.065 4.065 5 H 0.077 0.923 6 C -0.118 4.118 7 C -0.150 4.150 8 S -0.271 6.271 9 C -0.002 4.002 10 C -0.216 4.216 11 C -0.074 4.074 12 C -0.178 4.178 13 C 0.120 3.880 14 C -0.462 4.462 15 H 0.081 0.919 16 C 0.084 3.916 17 N -0.770 5.770 18 Si 0.900 3.100 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.232 4.232 23 C -0.063 4.063 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.284 0.716 41 H 0.093 0.907 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 5.259 11.515 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.135 4.135 4 C -0.193 4.193 5 H 0.096 0.904 6 C -0.157 4.157 7 C -0.209 4.209 8 S -0.038 6.038 9 C -0.148 4.148 10 C -0.220 4.220 11 C -0.094 4.094 12 C -0.198 4.198 13 C 0.117 3.883 14 C -0.491 4.491 15 H 0.099 0.901 16 C -0.138 4.138 17 N -0.393 5.393 18 Si 0.723 3.277 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.251 4.251 23 C -0.083 4.083 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.953 5.095 10.472 14.103 hybrid contribution 1.229 0.264 0.389 1.316 sum -6.724 5.359 10.861 13.853 Atomic orbital electron populations 1.21761 0.96179 1.01448 1.01364 1.21617 0.95326 0.96668 1.03051 1.21470 0.92123 0.97661 1.02292 1.23235 0.98904 0.98324 0.98869 0.90409 1.21827 1.00770 0.94759 0.98391 1.21855 1.01236 1.00406 0.97411 1.87402 1.09611 1.82467 1.24310 1.21969 0.91159 1.01854 0.99842 1.18364 1.12970 0.93674 0.96970 1.20459 0.98263 0.97150 0.93494 1.21070 1.06195 0.94630 0.97858 1.17603 0.87485 0.91699 0.91562 1.19613 1.32041 1.04991 0.92415 0.90063 1.25957 0.95154 0.93337 0.99310 1.69903 1.26505 1.21850 1.21028 0.86443 0.82385 0.78992 0.79857 1.19439 1.19865 1.18155 1.20899 1.09448 0.97675 0.97120 1.20351 0.97927 0.93076 0.96921 0.92853 0.93234 0.92811 0.90364 0.92336 0.91165 0.91362 0.91931 0.90943 0.92449 0.92896 0.92788 0.91613 0.91442 0.89445 0.87383 0.90533 0.88901 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.49 5.76 -26.73 -0.15 -1.64 16 3 C -0.10 -1.10 4.46 -26.73 -0.12 -1.22 16 4 C -0.06 -0.83 2.35 -26.73 -0.06 -0.89 16 5 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 6 C -0.12 -1.37 5.37 -26.73 -0.14 -1.51 16 7 C -0.15 -1.38 9.38 37.16 0.35 -1.03 16 8 S -0.27 -4.69 19.94 -107.50 -2.14 -6.83 16 9 C 0.00 -0.03 5.69 36.01 0.20 0.17 16 10 C -0.22 -4.76 5.16 -104.33 -0.54 -5.30 16 11 C -0.07 -1.73 9.67 -39.66 -0.38 -2.12 16 12 C -0.18 -4.62 8.76 -38.87 -0.34 -4.96 16 13 C 0.12 3.19 5.57 -106.82 -0.60 2.59 16 14 C -0.46 -12.16 8.99 -37.75 -0.34 -12.50 16 15 H 0.08 2.05 7.99 -52.49 -0.42 1.63 16 16 C 0.08 2.08 4.89 -17.35 -0.08 1.99 16 17 N -0.77 -19.72 11.53 55.55 0.64 -19.08 16 18 Si 0.90 18.19 29.64 -169.99 -5.04 13.15 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 22 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 23 C -0.06 -1.42 9.67 -39.66 -0.38 -1.81 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.08 7.13 -51.93 -0.37 0.71 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.68 6.30 -51.93 -0.33 0.35 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.76 7.10 -51.93 -0.37 0.39 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.49 6.64 -51.93 -0.34 0.14 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 1.10 8.08 -51.92 -0.42 0.68 16 37 H 0.07 1.14 7.33 -51.93 -0.38 0.76 16 38 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.11 2.87 6.41 -52.49 -0.34 2.53 16 40 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 41 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -26.73 350.60 -11.04 -37.77 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.18 Total: 5.15 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: -2.60 Total: -35.44 kcal Atomic # 7 Polarization: -19.72 SS G_CDS: 0.64 Total: -19.08 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.04 Total: 13.15 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -2.14 Total: -6.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.73 -11.04 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559407825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.853 kcal (2) G-P(sol) polarization free energy of solvation -26.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds