Wall clock time and date at job start Tue Mar 31 2020 00:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47479 * 2 1 4 4 C 1.52997 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47493 * 305.00383 * 4 3 2 6 6 C 1.53001 * 109.47212 * 185.00080 * 4 3 2 7 7 C 1.53001 * 109.47243 * 59.85867 * 6 4 3 8 8 S 1.81406 * 109.47129 * 65.00292 * 4 3 2 9 9 C 1.81408 * 102.99701 * 185.62453 * 8 4 3 10 10 C 1.50700 * 109.46456 * 175.00135 * 9 8 4 11 11 C 1.38634 * 119.74931 * 90.00636 * 10 9 8 12 12 C 1.37617 * 120.24875 * 180.27544 * 11 10 9 13 13 C 1.40722 * 119.74669 * 359.51170 * 12 11 10 14 14 C 1.41392 * 120.24742 * 180.23382 * 13 12 11 15 15 H 1.08001 * 120.00154 * 157.72664 * 14 13 12 16 16 C 1.39940 * 119.99993 * 337.72958 * 14 13 12 17 17 N 1.30820 * 120.00302 * 331.40341 * 16 14 13 18 18 Si 1.86805 * 120.00122 * 151.40292 * 16 14 13 19 19 H 1.48497 * 109.47184 * 94.98725 * 18 16 14 20 20 H 1.48505 * 109.47076 * 214.98654 * 18 16 14 21 21 H 1.48501 * 109.47068 * 334.98360 * 18 16 14 22 22 C 1.40722 * 119.50737 * 0.47852 * 13 12 11 23 23 C 1.37616 * 119.74165 * 359.75611 * 22 13 12 24 24 H 1.08996 * 109.47512 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46588 * 300.00067 * 1 2 3 26 26 H 1.09005 * 109.46790 * 59.99305 * 1 2 3 27 27 H 1.09003 * 109.46588 * 239.99933 * 2 1 3 28 28 H 1.08999 * 109.47141 * 120.00909 * 2 1 3 29 29 H 1.08996 * 109.46634 * 60.00355 * 3 2 1 30 30 H 1.09002 * 109.46967 * 300.00001 * 3 2 1 31 31 H 1.08994 * 109.47351 * 179.85937 * 6 4 3 32 32 H 1.09003 * 109.47038 * 299.85759 * 6 4 3 33 33 H 1.09000 * 109.46913 * 294.11830 * 7 6 4 34 34 H 1.09003 * 109.46814 * 54.11165 * 7 6 4 35 35 H 1.08993 * 109.47735 * 174.11716 * 7 6 4 36 36 H 1.09002 * 109.47096 * 55.00605 * 9 8 4 37 37 H 1.08991 * 109.47192 * 294.99813 * 9 8 4 38 38 H 1.08002 * 119.87599 * 359.97438 * 11 10 9 39 39 H 1.07999 * 120.12975 * 179.71909 * 12 11 10 40 40 H 0.96998 * 120.00874 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.12406 * 179.73144 * 22 13 12 42 42 H 1.08007 * 119.87230 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8526 0.8409 6 6 4.0803 2.8792 0.1251 7 6 3.5680 3.4899 1.4311 8 16 4.1740 0.7197 -1.5511 9 6 5.9686 0.6478 -1.2959 10 6 6.6144 -0.0512 -2.4644 11 6 7.0319 0.6860 -3.5618 12 6 7.6177 0.0576 -4.6368 13 6 7.8016 -1.3374 -4.6150 14 6 8.4068 -1.9933 -5.7117 15 1 8.8714 -2.9585 -5.5743 16 6 8.4039 -1.3917 -6.9752 17 7 7.4387 -0.5738 -7.3080 18 14 9.7783 -1.7565 -8.1866 19 1 9.3575 -2.8511 -9.0976 20 1 10.0743 -0.5374 -8.9812 21 1 10.9956 -2.1710 -7.4439 22 6 7.3741 -2.0754 -3.4957 23 6 6.7863 -1.4265 -2.4340 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 1.6768 1.9562 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 5.1702 2.8790 0.1272 32 1 3.7187 3.4682 -0.7178 33 1 2.4832 3.5864 1.3860 34 1 3.8409 2.8441 2.2657 35 1 4.0147 4.4741 1.5719 36 1 6.1835 0.0979 -0.3796 37 1 6.3648 1.6598 -1.2137 38 1 6.8925 1.7569 -3.5751 39 1 7.9381 0.6332 -5.4926 40 1 7.4368 -0.1565 -8.1836 41 1 7.5064 -3.1470 -3.4702 42 1 6.4570 -1.9909 -1.5740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559407825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:38 Heat of formation + Delta-G solvation = -35.486982 kcal Electronic energy + Delta-G solvation = -18653.378710 eV Core-core repulsion = 15915.088841 eV Total energy + Delta-G solvation = -2738.289869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.47471 -37.74008 -35.88060 -34.20124 -33.02127 -31.22249 -29.41254 -29.33303 -26.20143 -25.30625 -22.95140 -22.39671 -21.97734 -21.44544 -19.26038 -17.52594 -17.16674 -16.49465 -16.01405 -15.80484 -15.71899 -15.57699 -15.11529 -14.60643 -14.31271 -14.16095 -13.86592 -13.72975 -13.56219 -13.42906 -13.03711 -12.92832 -12.75337 -12.65595 -12.48387 -12.21191 -12.15728 -12.02837 -11.68155 -11.65311 -11.49858 -11.32795 -11.29054 -10.90688 -10.50357 -9.39868 -9.25743 -8.76295 -8.49940 -6.31951 0.50954 1.11579 1.20036 1.37311 1.50010 1.58475 1.92070 2.18351 2.68672 3.68834 3.72060 3.86128 4.13318 4.13642 4.19381 4.27052 4.34245 4.46857 4.50802 4.55122 4.57937 4.67957 4.72744 4.84593 4.85706 4.93670 5.00553 5.06616 5.12192 5.15134 5.19853 5.28482 5.31393 5.37106 5.41432 5.43886 5.50487 5.66410 5.92230 6.05124 6.17484 6.33919 6.64405 6.88742 6.99794 8.22324 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028336 B = 0.003380 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.889184 B = 8283.256722 C = 8598.190984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.093 4.093 4 C -0.045 4.045 5 H 0.086 0.914 6 C -0.117 4.117 7 C -0.145 4.145 8 S -0.316 6.316 9 C 0.005 3.995 10 C -0.207 4.207 11 C -0.080 4.080 12 C -0.201 4.201 13 C 0.089 3.911 14 C -0.503 4.503 15 H 0.079 0.921 16 C 0.045 3.955 17 N -0.807 5.807 18 Si 0.977 3.023 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.258 1.258 22 C -0.250 4.250 23 C -0.067 4.067 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.292 0.708 41 H 0.097 0.903 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 6.154 13.483 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.132 4.132 4 C -0.174 4.174 5 H 0.105 0.895 6 C -0.157 4.157 7 C -0.204 4.204 8 S -0.085 6.085 9 C -0.142 4.142 10 C -0.209 4.209 11 C -0.100 4.100 12 C -0.221 4.221 13 C 0.086 3.914 14 C -0.532 4.532 15 H 0.097 0.903 16 C -0.174 4.174 17 N -0.431 5.431 18 Si 0.796 3.204 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.181 1.181 22 C -0.269 4.269 23 C -0.086 4.086 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.728 5.980 12.438 16.329 hybrid contribution 1.298 0.062 -0.014 1.300 sum -7.430 6.042 12.424 15.686 Atomic orbital electron populations 1.21737 0.94813 1.01900 1.02030 1.21590 0.96580 0.96540 1.01950 1.21491 0.90823 0.97722 1.03130 1.23321 0.99711 0.98751 0.95594 0.89535 1.21809 1.00401 0.93788 0.99661 1.21821 1.01864 1.00794 0.95894 1.87535 1.08824 1.83622 1.28499 1.21856 0.91421 1.02322 0.98588 1.18746 1.11192 0.93619 0.97374 1.20689 0.97813 0.98118 0.93401 1.21050 1.07944 0.94642 0.98438 1.17934 0.88512 0.92323 0.92637 1.19843 1.33965 1.05740 0.93611 0.90333 1.26804 0.97059 0.92797 1.00693 1.69931 1.28101 1.23003 1.22075 0.85294 0.78633 0.79215 0.77217 1.18426 1.18817 1.18126 1.21107 1.10090 0.98112 0.97610 1.20649 0.97144 0.93702 0.97139 0.92603 0.91480 0.93200 0.93192 0.91683 0.88351 0.92263 0.92584 0.91757 0.91413 0.92143 0.91896 0.89812 0.90164 0.87899 0.89004 0.89702 0.88448 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.85 16 2 C -0.13 -2.72 5.76 30.59 0.18 -2.55 16 3 C -0.09 -1.87 4.46 30.59 0.14 -1.73 16 4 C -0.05 -1.05 2.35 30.59 0.07 -0.98 16 5 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 6 C -0.12 -2.40 5.37 30.59 0.16 -2.24 16 7 C -0.14 -2.13 9.38 71.98 0.68 -1.45 16 8 S -0.32 -10.58 19.94 -56.49 -1.13 -11.70 16 9 C 0.00 0.17 5.69 71.24 0.41 0.57 16 10 C -0.21 -8.99 5.16 -19.68 -0.10 -9.09 16 11 C -0.08 -3.83 9.67 22.22 0.21 -3.62 16 12 C -0.20 -10.86 8.76 22.73 0.20 -10.66 16 13 C 0.09 4.93 5.57 -21.29 -0.12 4.81 16 14 C -0.50 -27.64 8.99 23.46 0.21 -27.43 16 15 H 0.08 4.16 7.99 -2.91 -0.02 4.14 16 16 C 0.04 2.28 4.89 85.26 0.42 2.69 16 17 N -0.81 -42.81 11.53 21.82 0.25 -42.56 16 18 Si 0.98 38.06 29.64 68.60 2.03 40.09 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 22 C -0.25 -12.67 9.80 22.73 0.22 -12.44 16 23 C -0.07 -3.01 9.67 22.22 0.21 -2.79 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.05 1.34 7.13 -2.39 -0.02 1.32 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.49 6.30 -2.39 -0.02 1.47 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.22 7.10 -2.39 -0.02 1.21 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 0.87 6.64 -2.39 -0.02 0.85 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 2.58 8.08 -2.39 -0.02 2.56 16 37 H 0.08 2.55 7.33 -2.40 -0.02 2.53 16 38 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 39 H 0.09 5.14 6.41 -2.91 -0.02 5.12 16 40 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 41 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 42 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -59.82 350.60 5.72 -54.09 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.96 Total: 28.83 kcal Atomic # 6 Polarization: -72.35 SS G_CDS: 3.60 Total: -68.75 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.25 Total: -42.56 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: -10.58 SS G_CDS: -1.13 Total: -11.70 kcal Total: -59.82 5.72 -54.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559407825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.606 kcal (2) G-P(sol) polarization free energy of solvation -59.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds