Wall clock time and date at job start Tue Mar 31 2020 00:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47532 * 2 1 4 4 C 1.52995 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46870 * 55.00525 * 4 3 2 6 6 C 1.52997 * 109.47297 * 175.00157 * 4 3 2 7 7 C 1.53002 * 109.47037 * 295.01918 * 6 4 3 8 8 S 1.81395 * 109.47321 * 295.00259 * 4 3 2 9 9 C 1.81399 * 103.00096 * 170.73263 * 8 4 3 10 10 C 1.50703 * 109.47332 * 176.20173 * 9 8 4 11 11 C 1.38630 * 119.74828 * 269.72804 * 10 9 8 12 12 C 1.37626 * 120.24602 * 179.71555 * 11 10 9 13 13 C 1.40713 * 119.74415 * 0.57426 * 12 11 10 14 14 C 1.41391 * 120.24333 * 179.67437 * 13 12 11 15 15 H 1.08003 * 120.00161 * 27.57836 * 14 13 12 16 16 C 1.39944 * 120.00418 * 207.57798 * 14 13 12 17 17 N 1.30823 * 119.99859 * 15.31151 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 195.32163 * 16 14 13 19 19 H 1.48490 * 109.47323 * 59.99644 * 18 16 14 20 20 H 1.48504 * 109.46781 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46973 * 299.99375 * 18 16 14 22 22 C 1.40712 * 119.51113 * 359.70220 * 13 12 11 23 23 C 1.37621 * 119.74712 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.46954 * 59.99614 * 1 2 3 25 25 H 1.08997 * 109.47648 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47398 * 300.00527 * 1 2 3 27 27 H 1.08997 * 109.46962 * 239.99549 * 2 1 3 28 28 H 1.08999 * 109.46954 * 120.00386 * 2 1 3 29 29 H 1.09008 * 109.46890 * 59.99687 * 3 2 1 30 30 H 1.08999 * 109.47316 * 300.00164 * 3 2 1 31 31 H 1.08998 * 109.47420 * 55.01493 * 6 4 3 32 32 H 1.09002 * 109.47488 * 175.02063 * 6 4 3 33 33 H 1.08997 * 109.47423 * 60.59957 * 7 6 4 34 34 H 1.09004 * 109.47114 * 180.60137 * 7 6 4 35 35 H 1.09004 * 109.47060 * 300.59977 * 7 6 4 36 36 H 1.08995 * 109.47335 * 296.19903 * 9 8 4 37 37 H 1.09002 * 109.46951 * 56.20188 * 9 8 4 38 38 H 1.07999 * 119.87765 * 359.97438 * 11 10 9 39 39 H 1.08002 * 120.12689 * 180.27610 * 12 11 10 40 40 H 0.97002 * 120.00505 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.12514 * 179.97438 * 22 13 12 42 42 H 1.07998 * 119.87623 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0801 2.8793 -0.1250 7 6 3.6755 3.4468 -1.4871 8 16 4.1740 0.7198 1.5509 9 6 5.9548 0.5449 1.2531 10 6 6.6255 0.0347 2.5025 11 6 7.1097 0.9343 3.4396 12 6 7.7186 0.4796 4.5870 13 6 7.8597 -0.9040 4.8012 14 6 8.4898 -1.3826 5.9730 15 1 8.4670 -0.7931 6.8777 16 6 9.1429 -2.6202 5.9607 17 7 9.4346 -3.1946 4.8221 18 14 9.5980 -3.4522 7.5701 19 1 8.3676 -3.7037 8.3625 20 1 10.2756 -4.7427 7.2859 21 1 10.5121 -2.5719 8.3412 22 6 7.3696 -1.8076 3.8404 23 6 6.7590 -1.3305 2.7031 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.6454 3.4898 0.6665 32 1 5.1665 2.8884 -0.0358 33 1 2.5889 3.4477 -1.5721 34 1 4.0482 4.4669 -1.5809 35 1 4.1014 2.8302 -2.2787 36 1 6.1195 -0.1604 0.4386 37 1 6.3753 1.5142 0.9849 38 1 7.0048 1.9958 3.2706 39 1 8.0912 1.1821 5.3179 40 1 9.8877 -4.0522 4.8134 41 1 7.4729 -2.8715 3.9945 42 1 6.3818 -2.0222 1.9645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559407826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:44 Heat of formation + Delta-G solvation = -25.763159 kcal Electronic energy + Delta-G solvation = -18625.837049 eV Core-core repulsion = 15887.968836 eV Total energy + Delta-G solvation = -2737.868213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -37.63034 -36.81106 -33.99170 -33.34940 -31.20222 -29.33059 -28.62158 -27.55236 -25.03234 -23.78565 -21.51419 -21.02517 -20.78441 -19.93874 -17.32035 -16.36436 -15.45465 -15.18847 -14.88218 -14.31562 -14.22954 -14.03233 -13.83285 -13.44284 -13.33934 -12.69333 -12.52532 -12.26145 -12.02148 -11.97823 -11.85922 -11.67232 -11.53241 -11.26390 -11.10136 -10.92243 -10.80474 -10.77470 -10.63996 -10.49103 -10.23298 -9.70267 -9.41851 -9.33359 -9.13845 -7.49797 -7.28511 -7.15090 -6.78827 -4.38969 1.93659 2.79085 3.04381 3.04647 3.06382 3.09384 3.41741 3.90996 4.59580 4.62852 4.77406 5.00418 5.10521 5.16762 5.26335 5.39185 5.54176 5.56298 5.61807 5.64103 5.70522 5.78762 5.80866 5.87524 5.91684 5.97046 6.11433 6.14567 6.23383 6.28827 6.31953 6.37030 6.38188 6.91961 7.04087 7.22521 7.31307 7.57980 7.79674 8.01411 8.05532 8.25387 8.59582 8.84824 8.92463 10.15918 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028999 B = 0.003350 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.311805 B = 8355.950616 C = 8894.875013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.097 4.097 4 C -0.064 4.064 5 H 0.078 0.922 6 C -0.117 4.117 7 C -0.151 4.151 8 S -0.271 6.271 9 C -0.004 4.004 10 C -0.206 4.206 11 C -0.069 4.069 12 C -0.225 4.225 13 C 0.118 3.882 14 C -0.460 4.460 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.793 5.793 18 Si 0.910 3.090 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.163 4.163 23 C -0.081 4.081 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.282 0.718 41 H 0.117 0.883 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 6.242 -9.635 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.135 4.135 4 C -0.193 4.193 5 H 0.097 0.903 6 C -0.156 4.156 7 C -0.210 4.210 8 S -0.039 6.039 9 C -0.151 4.151 10 C -0.209 4.209 11 C -0.089 4.089 12 C -0.245 4.245 13 C 0.115 3.885 14 C -0.490 4.490 15 H 0.096 0.904 16 C -0.143 4.143 17 N -0.418 5.418 18 Si 0.734 3.266 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.182 4.182 23 C -0.101 4.101 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.135 0.865 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.829 5.757 -8.872 15.137 hybrid contribution 1.077 -0.128 -0.465 1.180 sum -9.752 5.629 -9.337 14.627 Atomic orbital electron populations 1.21759 0.96175 1.01454 1.01369 1.21621 0.95326 0.96645 1.03088 1.21465 0.92101 0.97676 1.02266 1.23221 0.98873 0.98414 0.98769 0.90331 1.21815 1.01155 0.94796 0.97863 1.21863 1.01461 1.00590 0.97072 1.87279 1.10674 1.82541 1.23361 1.21992 0.91221 1.02278 0.99559 1.18418 1.11302 0.93689 0.97508 1.20356 0.97758 0.96572 0.94208 1.20983 1.09472 0.95435 0.98599 1.17654 0.87962 0.90706 0.92221 1.19606 1.29578 1.02215 0.97605 0.90353 1.25922 0.93900 0.96704 0.97743 1.69802 1.29430 1.15609 1.27005 0.86339 0.79515 0.78616 0.82106 1.18767 1.20307 1.18978 1.21257 1.01817 0.99789 0.95367 1.20519 0.98880 0.93443 0.97245 0.93228 0.92848 0.92819 0.92327 0.90329 0.91380 0.91187 0.91015 0.91831 0.92467 0.92727 0.92913 0.91409 0.91387 0.89351 0.88826 0.90742 0.86531 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.44 5.76 -26.73 -0.15 -1.59 16 3 C -0.10 -1.06 4.55 -26.73 -0.12 -1.18 16 4 C -0.06 -0.80 2.27 -26.73 -0.06 -0.86 16 5 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.12 -1.33 5.37 -26.73 -0.14 -1.47 16 7 C -0.15 -1.37 9.66 37.16 0.36 -1.01 16 8 S -0.27 -4.54 19.91 -107.50 -2.14 -6.68 16 9 C 0.00 -0.07 5.89 36.01 0.21 0.14 16 10 C -0.21 -4.50 5.16 -104.33 -0.54 -5.04 16 11 C -0.07 -1.55 9.67 -39.66 -0.38 -1.94 16 12 C -0.22 -5.54 9.80 -38.87 -0.38 -5.92 16 13 C 0.12 3.14 5.55 -106.83 -0.59 2.55 16 14 C -0.46 -12.17 9.05 -37.74 -0.34 -12.51 16 15 H 0.08 1.99 7.89 -52.48 -0.41 1.57 16 16 C 0.08 1.88 5.17 -17.34 -0.09 1.79 16 17 N -0.79 -20.40 11.02 55.55 0.61 -19.79 16 18 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 22 C -0.16 -4.23 8.67 -38.87 -0.34 -4.57 16 23 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.04 7.13 -51.93 -0.37 0.67 16 29 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.78 6.92 -51.93 -0.36 0.42 16 33 H 0.06 0.47 6.49 -51.93 -0.34 0.14 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.07 1.13 7.00 -51.92 -0.36 0.77 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.12 3.12 6.30 -52.49 -0.33 2.79 16 42 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -26.57 349.90 -11.00 -37.58 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.13 Total: 5.03 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: -2.59 Total: -34.95 kcal Atomic # 7 Polarization: -20.40 SS G_CDS: 0.61 Total: -19.79 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -2.14 Total: -6.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.57 -11.00 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559407826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.814 kcal (2) G-P(sol) polarization free energy of solvation -26.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds