Wall clock time and date at job start Tue Mar 31 2020 00:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47532 * 2 1 4 4 C 1.52995 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46870 * 55.00525 * 4 3 2 6 6 C 1.52997 * 109.47297 * 175.00157 * 4 3 2 7 7 C 1.53002 * 109.47037 * 295.01918 * 6 4 3 8 8 S 1.81395 * 109.47321 * 295.00259 * 4 3 2 9 9 C 1.81399 * 103.00096 * 170.73263 * 8 4 3 10 10 C 1.50703 * 109.47332 * 176.20173 * 9 8 4 11 11 C 1.38630 * 119.74828 * 269.72804 * 10 9 8 12 12 C 1.37626 * 120.24602 * 179.71555 * 11 10 9 13 13 C 1.40713 * 119.74415 * 0.57426 * 12 11 10 14 14 C 1.41391 * 120.24333 * 179.67437 * 13 12 11 15 15 H 1.08003 * 120.00161 * 27.57836 * 14 13 12 16 16 C 1.39944 * 120.00418 * 207.57798 * 14 13 12 17 17 N 1.30823 * 119.99859 * 15.31151 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 195.32163 * 16 14 13 19 19 H 1.48490 * 109.47323 * 59.99644 * 18 16 14 20 20 H 1.48504 * 109.46781 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46973 * 299.99375 * 18 16 14 22 22 C 1.40712 * 119.51113 * 359.70220 * 13 12 11 23 23 C 1.37621 * 119.74712 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.46954 * 59.99614 * 1 2 3 25 25 H 1.08997 * 109.47648 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47398 * 300.00527 * 1 2 3 27 27 H 1.08997 * 109.46962 * 239.99549 * 2 1 3 28 28 H 1.08999 * 109.46954 * 120.00386 * 2 1 3 29 29 H 1.09008 * 109.46890 * 59.99687 * 3 2 1 30 30 H 1.08999 * 109.47316 * 300.00164 * 3 2 1 31 31 H 1.08998 * 109.47420 * 55.01493 * 6 4 3 32 32 H 1.09002 * 109.47488 * 175.02063 * 6 4 3 33 33 H 1.08997 * 109.47423 * 60.59957 * 7 6 4 34 34 H 1.09004 * 109.47114 * 180.60137 * 7 6 4 35 35 H 1.09004 * 109.47060 * 300.59977 * 7 6 4 36 36 H 1.08995 * 109.47335 * 296.19903 * 9 8 4 37 37 H 1.09002 * 109.46951 * 56.20188 * 9 8 4 38 38 H 1.07999 * 119.87765 * 359.97438 * 11 10 9 39 39 H 1.08002 * 120.12689 * 180.27610 * 12 11 10 40 40 H 0.97002 * 120.00505 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.12514 * 179.97438 * 22 13 12 42 42 H 1.07998 * 119.87623 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0801 2.8793 -0.1250 7 6 3.6755 3.4468 -1.4871 8 16 4.1740 0.7198 1.5509 9 6 5.9548 0.5449 1.2531 10 6 6.6255 0.0347 2.5025 11 6 7.1097 0.9343 3.4396 12 6 7.7186 0.4796 4.5870 13 6 7.8597 -0.9040 4.8012 14 6 8.4898 -1.3826 5.9730 15 1 8.4670 -0.7931 6.8777 16 6 9.1429 -2.6202 5.9607 17 7 9.4346 -3.1946 4.8221 18 14 9.5980 -3.4522 7.5701 19 1 8.3676 -3.7037 8.3625 20 1 10.2756 -4.7427 7.2859 21 1 10.5121 -2.5719 8.3412 22 6 7.3696 -1.8076 3.8404 23 6 6.7590 -1.3305 2.7031 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.6454 3.4898 0.6665 32 1 5.1665 2.8884 -0.0358 33 1 2.5889 3.4477 -1.5721 34 1 4.0482 4.4669 -1.5809 35 1 4.1014 2.8302 -2.2787 36 1 6.1195 -0.1604 0.4386 37 1 6.3753 1.5142 0.9849 38 1 7.0048 1.9958 3.2706 39 1 8.0912 1.1821 5.3179 40 1 9.8877 -4.0522 4.8134 41 1 7.4729 -2.8715 3.9945 42 1 6.3818 -2.0222 1.9645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559407826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:42 Heat of formation + Delta-G solvation = -35.139643 kcal Electronic energy + Delta-G solvation = -18626.243644 eV Core-core repulsion = 15887.968836 eV Total energy + Delta-G solvation = -2738.274807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.49395 -37.71822 -35.83539 -34.20169 -32.98265 -31.22403 -29.43936 -29.30511 -26.16241 -25.31427 -22.92705 -22.36327 -22.03944 -21.44658 -19.23583 -17.52560 -17.16743 -16.45797 -16.02397 -15.80147 -15.67678 -15.57626 -15.10574 -14.63644 -14.29930 -14.14554 -13.85627 -13.68374 -13.51800 -13.38283 -13.16111 -12.88537 -12.73983 -12.55523 -12.53649 -12.30173 -12.10822 -11.94771 -11.70129 -11.64303 -11.50931 -11.34040 -11.26163 -11.01596 -10.51810 -9.39667 -9.16367 -8.64533 -8.49636 -6.35866 0.48746 1.10838 1.22936 1.37898 1.49445 1.56752 1.90442 2.20428 2.76433 3.68833 3.72484 3.85960 4.11592 4.12811 4.17897 4.27755 4.34806 4.46036 4.49847 4.56362 4.58339 4.68108 4.71909 4.84831 4.86764 4.94009 5.01511 5.07078 5.13896 5.16253 5.20056 5.31457 5.32001 5.37159 5.41566 5.44982 5.51178 5.67850 5.90909 6.07366 6.16306 6.35193 6.66574 6.91412 6.99517 8.32839 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028999 B = 0.003350 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.311805 B = 8355.950616 C = 8894.875013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.093 4.093 4 C -0.047 4.047 5 H 0.085 0.915 6 C -0.116 4.116 7 C -0.146 4.146 8 S -0.307 6.307 9 C 0.000 4.000 10 C -0.195 4.195 11 C -0.073 4.073 12 C -0.240 4.240 13 C 0.085 3.915 14 C -0.501 4.501 15 H 0.076 0.924 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.185 4.185 23 C -0.088 4.088 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.288 0.712 41 H 0.099 0.901 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.556 7.363 -11.205 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.131 4.131 4 C -0.176 4.176 5 H 0.103 0.897 6 C -0.155 4.155 7 C -0.205 4.205 8 S -0.075 6.075 9 C -0.146 4.146 10 C -0.197 4.197 11 C -0.093 4.093 12 C -0.260 4.260 13 C 0.082 3.918 14 C -0.531 4.531 15 H 0.094 0.906 16 C -0.180 4.180 17 N -0.453 5.453 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.205 4.205 23 C -0.108 4.108 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.057 6.884 -10.439 17.371 hybrid contribution 1.305 -0.347 -0.180 1.363 sum -10.751 6.537 -10.619 16.465 Atomic orbital electron populations 1.21734 0.94807 1.01886 1.02054 1.21596 0.96579 0.96541 1.01991 1.21483 0.90720 0.97727 1.03167 1.23321 0.99763 0.98824 0.95652 0.89708 1.21798 1.00527 0.93835 0.99352 1.21831 1.02267 1.01001 0.95385 1.87372 1.09349 1.83570 1.27220 1.21880 0.91934 1.03220 0.97613 1.18799 1.09617 0.92932 0.98393 1.20658 0.96953 0.98154 0.93486 1.21195 1.10102 0.94951 0.99768 1.17983 0.89015 0.91811 0.92968 1.19846 1.31524 1.03912 0.97788 0.90562 1.26766 0.93224 0.96701 1.01328 1.69859 1.30179 1.16199 1.29061 0.85236 0.79237 0.77753 0.77391 1.18569 1.19098 1.18267 1.21216 1.03509 0.99007 0.96782 1.20739 0.98472 0.94778 0.96804 0.91592 0.92642 0.93050 0.91875 0.92971 0.92043 0.88490 0.91403 0.92727 0.91313 0.91832 0.92464 0.90429 0.89698 0.86639 0.88260 0.90101 0.88328 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.13 -2.62 5.76 30.59 0.18 -2.45 16 3 C -0.09 -1.77 4.55 30.59 0.14 -1.63 16 4 C -0.05 -1.06 2.27 30.59 0.07 -0.99 16 5 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 6 C -0.12 -2.29 5.37 30.59 0.16 -2.13 16 7 C -0.15 -2.10 9.66 71.98 0.70 -1.41 16 8 S -0.31 -9.84 19.91 -56.49 -1.12 -10.96 16 9 C 0.00 0.01 5.89 71.24 0.42 0.43 16 10 C -0.19 -8.42 5.16 -19.67 -0.10 -8.52 16 11 C -0.07 -3.25 9.67 22.22 0.21 -3.04 16 12 C -0.24 -12.12 9.80 22.73 0.22 -11.90 16 13 C 0.09 4.72 5.55 -21.29 -0.12 4.60 16 14 C -0.50 -27.64 9.05 23.46 0.21 -27.43 16 15 H 0.08 4.05 7.89 -2.91 -0.02 4.02 16 16 C 0.03 1.77 5.17 85.26 0.44 2.21 16 17 N -0.83 -44.03 11.02 21.83 0.24 -43.79 16 18 Si 0.98 38.80 29.59 68.60 2.03 40.83 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 C -0.19 -10.05 8.67 22.73 0.20 -9.85 16 23 C -0.09 -4.20 9.67 22.22 0.21 -3.98 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.34 7.13 -2.39 -0.02 1.32 16 29 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.10 1.40 6.36 -2.39 -0.02 1.39 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.18 6.92 -2.39 -0.02 1.17 16 33 H 0.07 0.84 6.49 -2.39 -0.02 0.83 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.08 2.49 8.08 -2.39 -0.02 2.47 16 37 H 0.08 2.61 7.00 -2.39 -0.02 2.59 16 38 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 40 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 41 H 0.10 5.59 6.30 -2.91 -0.02 5.57 16 42 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -59.31 349.90 5.77 -53.53 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.96 Total: 28.19 kcal Atomic # 6 Polarization: -71.47 SS G_CDS: 3.66 Total: -67.81 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.24 Total: -43.79 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 16 Polarization: -9.84 SS G_CDS: -1.12 Total: -10.96 kcal Total: -59.31 5.77 -53.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559407826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.395 kcal (2) G-P(sol) polarization free energy of solvation -59.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds