Wall clock time and date at job start Tue Mar 31 2020 00:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 C 1.52997 * 109.47291 * 59.99790 * 3 2 1 5 5 C 1.53001 * 109.47149 * 299.99786 * 3 2 1 6 6 C 1.50696 * 109.46976 * 180.02562 * 3 2 1 7 7 C 1.38238 * 119.99767 * 180.02562 * 6 3 2 8 8 C 1.38235 * 120.00108 * 179.97438 * 7 6 3 9 9 C 1.38243 * 119.99617 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99586 * 179.97438 * 9 8 7 11 11 S 1.81398 * 109.47148 * 90.00008 * 10 9 8 12 12 C 1.81394 * 103.00193 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47410 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99864 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00202 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00134 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99937 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47154 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47029 * 119.99775 * 17 15 13 20 20 H 1.48498 * 109.46954 * 239.99730 * 17 15 13 21 21 C 1.38233 * 120.00248 * 0.25361 * 9 8 7 22 22 C 1.38234 * 120.00185 * 0.02562 * 6 3 2 23 23 H 1.08995 * 109.47369 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46777 * 300.00601 * 1 2 3 25 25 H 1.09004 * 109.46842 * 59.99686 * 1 2 3 26 26 H 1.09006 * 109.47124 * 239.99674 * 2 1 3 27 27 H 1.09000 * 109.46935 * 119.99829 * 2 1 3 28 28 H 1.08995 * 109.47505 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47369 * 300.00362 * 4 3 2 30 30 H 1.09000 * 109.47099 * 60.00078 * 4 3 2 31 31 H 1.09006 * 109.47016 * 300.00166 * 5 3 2 32 32 H 1.09002 * 109.47144 * 59.99868 * 5 3 2 33 33 H 1.08995 * 109.47322 * 180.02562 * 5 3 2 34 34 H 1.08000 * 120.00559 * 359.97438 * 7 6 3 35 35 H 1.07999 * 120.00165 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.46646 * 209.99280 * 10 9 8 37 37 H 1.09000 * 109.47248 * 329.99998 * 10 9 8 38 38 H 1.08998 * 109.46917 * 299.99947 * 12 11 10 39 39 H 1.09001 * 109.47091 * 59.99712 * 12 11 10 40 40 H 0.96997 * 120.00220 * 179.97438 * 16 15 13 41 41 H 1.08004 * 119.99934 * 179.72684 * 21 9 8 42 42 H 1.07999 * 119.99990 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5302 2.1637 -1.2493 6 6 3.5471 1.4424 -0.0006 7 6 4.2383 2.6395 -0.0002 8 6 5.6206 2.6396 -0.0003 9 6 6.3118 1.4423 -0.0013 10 6 7.8188 1.4423 -0.0019 11 16 8.4242 1.4413 1.7081 12 6 10.2265 1.4406 1.5029 13 6 10.8864 1.4404 2.8578 14 1 10.2819 1.4402 3.7528 15 6 12.2617 1.4404 2.9548 16 7 12.9978 1.4402 1.8649 17 14 13.0796 1.4394 4.6342 18 1 12.0375 1.4380 5.6923 19 1 13.9258 0.2268 4.7720 20 1 13.9256 2.6518 4.7735 21 6 5.6206 0.2452 -0.0075 22 6 4.2382 0.2452 -0.0016 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8938 3.1912 1.2494 29 1 0.4401 2.1638 1.2492 30 1 1.8934 1.6500 2.1392 31 1 1.8935 1.6498 -2.1393 32 1 0.4402 2.1637 -1.2493 33 1 1.8939 3.1912 -1.2495 34 1 3.6984 3.5749 0.0002 35 1 6.1606 3.5748 -0.0003 36 1 8.1819 0.5525 -0.5163 37 1 8.1820 2.3326 -0.5153 38 1 10.5290 0.5508 0.9509 39 1 10.5298 2.3307 0.9517 40 1 13.9654 1.4406 1.9332 41 1 6.1606 -0.6901 -0.0128 42 1 3.6982 -0.6901 -0.0024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559422585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:20 Heat of formation + Delta-G solvation = -11.847751 kcal Electronic energy + Delta-G solvation = -18586.015862 eV Core-core repulsion = 15848.751067 eV Total energy + Delta-G solvation = -2737.264795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99521 -37.20016 -33.13507 -32.32411 -31.11013 -29.91386 -28.52837 -27.46197 -26.76017 -24.42187 -23.04841 -22.09887 -21.34488 -18.86054 -16.82841 -16.36987 -15.41188 -15.28475 -14.95184 -14.87518 -14.53078 -14.26432 -13.75803 -13.66685 -13.39630 -13.04192 -12.80546 -12.55082 -12.34255 -12.20529 -12.14109 -11.86497 -11.85312 -11.52109 -11.36788 -11.18479 -10.88559 -10.86116 -10.70136 -10.52398 -10.38191 -10.08676 -9.54897 -8.85444 -8.75016 -8.61151 -8.23018 -6.65924 -6.18583 -4.22525 1.35525 1.57765 2.79110 3.25562 3.32659 3.39460 3.89012 4.01339 4.36587 4.45147 4.51802 4.75339 5.01827 5.02683 5.10422 5.14853 5.15248 5.18533 5.23862 5.36962 5.47893 5.49267 5.59252 5.68109 5.69440 5.74730 5.79255 5.80833 5.87060 5.93679 5.97594 6.15388 6.18898 6.21035 6.22987 6.59440 6.72317 6.82620 7.10995 7.12575 7.15214 7.76372 8.02707 8.79736 9.40446 10.92799 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040638 B = 0.002856 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.842043 B = 9800.694095 C = 9931.751473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.023 4.023 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.078 4.078 7 C -0.116 4.116 8 C -0.103 4.103 9 C -0.057 4.057 10 C -0.055 4.055 11 S -0.297 6.297 12 C 0.087 3.913 13 C -0.510 4.510 14 H 0.067 0.933 15 C 0.064 3.936 16 N -0.894 5.894 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.103 4.103 22 C -0.122 4.122 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.122 0.878 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.271 -0.324 -6.860 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.023 4.023 4 C -0.197 4.197 5 C -0.196 4.196 6 C -0.079 4.079 7 C -0.134 4.134 8 C -0.122 4.122 9 C -0.058 4.058 10 C -0.202 4.202 11 S -0.068 6.068 12 C -0.059 4.059 13 C -0.549 4.549 14 H 0.086 0.914 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.123 4.123 22 C -0.140 4.140 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.627 -0.324 -5.986 24.375 hybrid contribution 1.466 0.006 -0.311 1.499 sum -22.160 -0.318 -6.297 23.040 Atomic orbital electron populations 1.21912 0.95936 1.01476 1.02012 1.21668 0.95741 0.95703 1.02222 1.19463 0.90898 0.95870 0.96040 1.21940 1.00669 1.00280 0.96857 1.21935 1.00726 1.00205 0.96771 1.19726 0.94411 0.93252 1.00485 1.20858 0.93796 0.97393 1.01331 1.21013 0.93980 0.97656 0.99580 1.19388 0.93712 0.93545 0.99203 1.22202 0.93943 1.04740 0.99311 1.86851 1.13499 1.98000 1.08421 1.21072 0.83657 1.00010 1.01200 1.20726 0.91091 1.51975 0.91142 0.91443 1.24972 0.96826 0.94706 0.97438 1.69963 1.05642 1.49891 1.27700 0.86301 0.79314 0.77727 0.83360 1.19401 1.20728 1.20725 1.21037 0.94043 0.97635 0.99543 1.21067 0.93835 0.97688 1.01378 0.92953 0.92410 0.92489 0.91677 0.91555 0.92489 0.92239 0.92423 0.92599 0.92229 0.92525 0.86444 0.86013 0.90126 0.90129 0.94671 0.94672 0.92576 0.86016 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.21 37.16 0.34 -0.72 16 2 C -0.12 -0.95 3.65 -26.73 -0.10 -1.04 16 3 C -0.02 -0.21 0.63 -155.66 -0.10 -0.30 16 4 C -0.14 -1.21 7.94 37.16 0.29 -0.92 16 5 C -0.14 -1.12 7.93 37.16 0.29 -0.83 16 6 C -0.08 -0.91 4.76 -104.63 -0.50 -1.41 16 7 C -0.12 -1.43 8.71 -39.58 -0.34 -1.78 16 8 C -0.10 -1.47 9.70 -39.58 -0.38 -1.85 16 9 C -0.06 -0.90 5.14 -104.62 -0.54 -1.43 16 10 C -0.05 -0.96 6.07 36.01 0.22 -0.75 16 11 S -0.30 -6.65 21.64 -107.50 -2.33 -8.97 16 12 C 0.09 2.31 5.70 36.00 0.21 2.52 16 13 C -0.51 -14.63 9.13 -34.44 -0.31 -14.94 16 14 H 0.07 1.95 7.71 -52.48 -0.40 1.54 16 15 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 17 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.10 -1.47 9.70 -39.58 -0.38 -1.85 16 22 C -0.12 -1.51 8.98 -39.58 -0.36 -1.86 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 25 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 26 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 27 H 0.07 0.57 7.52 -51.93 -0.39 0.18 16 28 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 29 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 33 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 34 H 0.12 1.22 7.10 -52.49 -0.37 0.85 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.08 1.37 8.08 -51.92 -0.42 0.95 16 37 H 0.08 1.37 8.09 -51.92 -0.42 0.95 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.12 1.28 5.90 -52.49 -0.31 0.97 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -29.87 346.02 -10.06 -39.93 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.90 Total: -1.79 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -1.76 Total: -25.44 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -2.33 Total: -8.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.87 -10.06 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559422585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.081 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds