Wall clock time and date at job start Tue Mar 31 2020 00:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 C 1.52997 * 109.47291 * 59.99790 * 3 2 1 5 5 C 1.53001 * 109.47149 * 299.99786 * 3 2 1 6 6 C 1.50696 * 109.46976 * 180.02562 * 3 2 1 7 7 C 1.38238 * 119.99767 * 180.02562 * 6 3 2 8 8 C 1.38235 * 120.00108 * 179.97438 * 7 6 3 9 9 C 1.38243 * 119.99617 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99586 * 179.97438 * 9 8 7 11 11 S 1.81398 * 109.47148 * 90.00008 * 10 9 8 12 12 C 1.81394 * 103.00193 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47410 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99864 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00202 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00134 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99937 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47154 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47029 * 119.99775 * 17 15 13 20 20 H 1.48498 * 109.46954 * 239.99730 * 17 15 13 21 21 C 1.38233 * 120.00248 * 0.25361 * 9 8 7 22 22 C 1.38234 * 120.00185 * 0.02562 * 6 3 2 23 23 H 1.08995 * 109.47369 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46777 * 300.00601 * 1 2 3 25 25 H 1.09004 * 109.46842 * 59.99686 * 1 2 3 26 26 H 1.09006 * 109.47124 * 239.99674 * 2 1 3 27 27 H 1.09000 * 109.46935 * 119.99829 * 2 1 3 28 28 H 1.08995 * 109.47505 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47369 * 300.00362 * 4 3 2 30 30 H 1.09000 * 109.47099 * 60.00078 * 4 3 2 31 31 H 1.09006 * 109.47016 * 300.00166 * 5 3 2 32 32 H 1.09002 * 109.47144 * 59.99868 * 5 3 2 33 33 H 1.08995 * 109.47322 * 180.02562 * 5 3 2 34 34 H 1.08000 * 120.00559 * 359.97438 * 7 6 3 35 35 H 1.07999 * 120.00165 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.46646 * 209.99280 * 10 9 8 37 37 H 1.09000 * 109.47248 * 329.99998 * 10 9 8 38 38 H 1.08998 * 109.46917 * 299.99947 * 12 11 10 39 39 H 1.09001 * 109.47091 * 59.99712 * 12 11 10 40 40 H 0.96997 * 120.00220 * 179.97438 * 16 15 13 41 41 H 1.08004 * 119.99934 * 179.72684 * 21 9 8 42 42 H 1.07999 * 119.99990 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5302 2.1637 -1.2493 6 6 3.5471 1.4424 -0.0006 7 6 4.2383 2.6395 -0.0002 8 6 5.6206 2.6396 -0.0003 9 6 6.3118 1.4423 -0.0013 10 6 7.8188 1.4423 -0.0019 11 16 8.4242 1.4413 1.7081 12 6 10.2265 1.4406 1.5029 13 6 10.8864 1.4404 2.8578 14 1 10.2819 1.4402 3.7528 15 6 12.2617 1.4404 2.9548 16 7 12.9978 1.4402 1.8649 17 14 13.0796 1.4394 4.6342 18 1 12.0375 1.4380 5.6923 19 1 13.9258 0.2268 4.7720 20 1 13.9256 2.6518 4.7735 21 6 5.6206 0.2452 -0.0075 22 6 4.2382 0.2452 -0.0016 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8938 3.1912 1.2494 29 1 0.4401 2.1638 1.2492 30 1 1.8934 1.6500 2.1392 31 1 1.8935 1.6498 -2.1393 32 1 0.4402 2.1637 -1.2493 33 1 1.8939 3.1912 -1.2495 34 1 3.6984 3.5749 0.0002 35 1 6.1606 3.5748 -0.0003 36 1 8.1819 0.5525 -0.5163 37 1 8.1820 2.3326 -0.5153 38 1 10.5290 0.5508 0.9509 39 1 10.5298 2.3307 0.9517 40 1 13.9654 1.4406 1.9332 41 1 6.1606 -0.6901 -0.0128 42 1 3.6982 -0.6901 -0.0024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559422585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:19 Heat of formation + Delta-G solvation = -24.705685 kcal Electronic energy + Delta-G solvation = -18586.573424 eV Core-core repulsion = 15848.751067 eV Total energy + Delta-G solvation = -2737.822357 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92989 -38.06960 -35.31625 -33.35776 -32.10049 -30.76710 -30.63089 -28.10405 -27.89108 -25.41547 -24.96241 -23.11991 -22.35401 -19.65791 -18.71783 -17.66375 -17.04810 -16.42708 -16.38256 -15.96129 -15.56206 -15.22000 -14.86255 -14.70680 -14.53135 -14.43211 -14.29577 -14.26391 -13.54206 -13.35998 -13.18738 -12.82096 -12.76701 -12.69786 -12.59246 -12.35351 -12.11371 -12.11026 -11.96100 -11.60047 -11.44152 -11.35014 -11.14157 -10.77463 -10.75405 -9.80201 -9.37353 -8.50285 -8.35394 -6.49068 0.16252 0.52589 1.24037 1.38591 1.38999 1.54261 2.00985 2.35175 2.92612 2.98718 3.62782 3.74608 3.83638 3.93499 4.10326 4.14424 4.31512 4.39705 4.49754 4.55934 4.58556 4.62287 4.76643 4.79942 4.88176 4.91559 4.91610 4.98870 5.07345 5.09521 5.16530 5.20269 5.21076 5.26130 5.30546 5.48569 5.54794 5.55197 5.62576 5.70139 5.77204 5.86392 6.11214 6.58438 7.19066 8.76771 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040638 B = 0.002856 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.842043 B = 9800.694095 C = 9931.751473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.022 4.022 4 C -0.140 4.140 5 C -0.138 4.138 6 C -0.070 4.070 7 C -0.117 4.117 8 C -0.111 4.111 9 C -0.083 4.083 10 C -0.038 4.038 11 S -0.309 6.309 12 C 0.091 3.909 13 C -0.536 4.536 14 H 0.060 0.940 15 C 0.014 3.986 16 N -0.926 5.926 17 Si 0.978 3.022 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.112 4.112 22 C -0.124 4.124 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.139 0.861 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.271 0.729 41 H 0.123 0.877 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.429 -0.242 -6.525 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.022 4.022 4 C -0.197 4.197 5 C -0.195 4.195 6 C -0.071 4.071 7 C -0.135 4.135 8 C -0.131 4.131 9 C -0.084 4.084 10 C -0.185 4.185 11 S -0.080 6.080 12 C -0.057 4.057 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.801 3.199 18 H -0.190 1.190 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.132 4.132 22 C -0.142 4.142 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.080 0.920 41 H 0.141 0.859 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.785 -0.243 -5.654 26.399 hybrid contribution 1.970 -0.023 -0.514 2.036 sum -23.816 -0.266 -6.168 24.603 Atomic orbital electron populations 1.21893 0.94654 1.02034 1.02496 1.21667 0.96880 0.94899 1.01950 1.19529 0.88882 0.96859 0.96897 1.21946 1.01820 0.99962 0.95988 1.21929 1.01786 0.99951 0.95814 1.20128 0.96134 0.92692 0.98162 1.21110 0.93067 0.98733 1.00547 1.21154 0.95036 0.97249 0.99695 1.19289 0.92182 0.94802 1.02163 1.22207 0.95658 1.05157 0.95477 1.86673 1.09946 1.98000 1.13342 1.20755 0.87071 0.97864 0.99964 1.21016 0.91947 1.52850 0.91649 0.92140 1.25939 0.97340 0.93738 1.01687 1.70062 1.06232 1.50122 1.30030 0.85205 0.78211 0.78324 0.78160 1.18986 1.19636 1.19617 1.21177 0.95081 0.97246 0.99669 1.21329 0.93121 0.99043 1.00692 0.92466 0.92089 0.91791 0.91659 0.92155 0.92500 0.90489 0.93525 0.92982 0.90593 0.92437 0.84300 0.85864 0.89736 0.89715 0.96777 0.96770 0.92015 0.85900 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.21 71.98 0.66 -0.98 16 2 C -0.12 -1.61 3.65 30.60 0.11 -1.50 16 3 C -0.02 -0.34 0.63 -52.93 -0.03 -0.37 16 4 C -0.14 -2.06 7.94 71.98 0.57 -1.49 16 5 C -0.14 -1.81 7.93 71.98 0.57 -1.24 16 6 C -0.07 -1.50 4.76 -19.87 -0.09 -1.59 16 7 C -0.12 -2.68 8.71 22.27 0.19 -2.49 16 8 C -0.11 -3.11 9.70 22.27 0.22 -2.89 16 9 C -0.08 -2.59 5.14 -19.86 -0.10 -2.69 16 10 C -0.04 -1.36 6.07 71.24 0.43 -0.92 16 11 S -0.31 -14.22 21.64 -56.49 -1.22 -15.44 16 12 C 0.09 5.01 5.70 71.24 0.41 5.42 16 13 C -0.54 -31.57 9.13 25.60 0.23 -31.33 16 14 H 0.06 3.57 7.71 -2.91 -0.02 3.54 16 15 C 0.01 0.78 5.46 84.66 0.46 1.24 16 16 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 17 Si 0.98 44.47 29.54 68.60 2.03 46.49 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C -0.11 -3.14 9.70 22.27 0.22 -2.92 16 22 C -0.12 -2.88 8.98 22.27 0.20 -2.68 16 23 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 0.62 6.43 -2.39 -0.02 0.60 16 25 H 0.06 0.60 6.43 -2.38 -0.02 0.58 16 26 H 0.06 0.90 7.51 -2.38 -0.02 0.89 16 27 H 0.06 0.91 7.52 -2.39 -0.02 0.89 16 28 H 0.06 0.84 7.39 -2.39 -0.02 0.82 16 29 H 0.08 0.87 6.43 -2.39 -0.02 0.86 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 32 H 0.08 0.77 6.43 -2.39 -0.02 0.75 16 33 H 0.06 0.75 7.39 -2.39 -0.02 0.74 16 34 H 0.14 2.56 7.10 -2.91 -0.02 2.53 16 35 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 36 H 0.08 2.94 8.08 -2.39 -0.02 2.92 16 37 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 38 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.14 2.69 5.90 -2.91 -0.02 2.67 16 Total: -1.00 -64.75 346.02 6.11 -58.64 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.97 Total: 11.82 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 4.05 Total: -46.44 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -14.22 SS G_CDS: -1.22 Total: -15.44 kcal Total: -64.75 6.11 -58.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559422585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.934 kcal (2) G-P(sol) polarization free energy of solvation -64.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds