Wall clock time and date at job start Tue Mar 31 2020 00:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46998 * 2 1 4 4 C 1.50695 * 109.47469 * 239.99534 * 2 1 3 5 5 H 1.07993 * 120.00500 * 241.34549 * 4 2 1 6 6 C 1.37878 * 119.99620 * 61.34645 * 4 2 1 7 7 N 1.31516 * 120.00005 * 193.97431 * 6 4 2 8 8 Si 1.86796 * 120.00120 * 13.98128 * 6 4 2 9 9 H 1.48497 * 109.47586 * 84.54505 * 8 6 4 10 10 H 1.48504 * 109.47348 * 204.55036 * 8 6 4 11 11 H 1.48502 * 109.47043 * 324.54273 * 8 6 4 12 12 C 1.53006 * 109.46856 * 119.99623 * 2 1 3 13 13 N 1.46501 * 109.47276 * 300.00048 * 12 2 1 14 14 C 1.34776 * 120.00135 * 180.02562 * 13 12 2 15 15 O 1.21596 * 119.99763 * 0.02562 * 14 13 12 16 16 N 1.34770 * 119.99928 * 179.72840 * 14 13 12 17 17 C 1.46500 * 119.99820 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47278 * 179.97438 * 17 16 14 19 19 C 1.38609 * 120.07878 * 94.72210 * 18 17 16 20 20 C 1.38886 * 117.97020 * 179.74457 * 19 18 17 21 21 C 1.38603 * 117.96874 * 0.51669 * 20 19 18 22 22 N 1.31937 * 119.84553 * 359.73500 * 21 20 19 23 23 N 1.28348 * 122.18312 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46992 * 309.36716 * 1 2 3 25 25 H 1.08996 * 109.47130 * 69.36903 * 1 2 3 26 26 H 1.08999 * 109.46898 * 189.37054 * 1 2 3 27 27 H 1.09006 * 109.47263 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47090 * 299.99846 * 3 2 1 29 29 H 1.09002 * 109.47521 * 60.00012 * 3 2 1 30 30 H 0.97005 * 120.00048 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46653 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.46940 * 60.00161 * 12 2 1 33 33 H 0.96995 * 119.99757 * 0.02562 * 13 12 2 34 34 H 0.96994 * 120.00644 * 359.97438 * 16 14 13 35 35 H 1.09006 * 109.47019 * 299.99140 * 17 16 14 36 36 H 1.08997 * 109.47898 * 59.99104 * 17 16 14 37 37 H 1.08005 * 121.01516 * 359.97438 * 19 18 17 38 38 H 1.08001 * 121.01742 * 180.23117 * 20 19 18 39 39 H 1.07999 * 120.08068 * 179.75604 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6352 -1.6010 -1.1314 6 6 1.7224 -0.2235 -2.4824 7 7 1.9159 -0.9727 -3.5459 8 14 1.0277 1.5005 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2470 1.5864 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4906 3.6696 15 8 2.5774 -1.4787 3.7812 16 7 1.4328 0.1480 4.7700 17 6 1.7876 -0.3519 6.1006 18 6 1.1698 0.5343 7.1512 19 6 -0.0541 0.2003 7.7096 20 6 -0.5806 1.0452 8.6780 21 6 0.1452 2.1759 9.0184 22 7 1.3010 2.4162 8.4291 23 7 1.7897 1.6329 7.5376 24 1 -0.3633 0.6518 0.7945 25 1 -0.3633 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1673 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6981 -0.6299 -4.4268 31 1 3.1300 -0.7208 1.2496 32 1 1.6766 -1.7488 1.2494 33 1 0.9937 0.7579 2.3564 34 1 0.8784 0.9389 4.6810 35 1 1.4146 -1.3694 6.2179 36 1 2.8717 -0.3471 6.2135 37 1 -0.5805 -0.6918 7.4036 38 1 -1.5289 0.8303 9.1482 39 1 -0.2342 2.8584 9.7644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001564655935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:05 Heat of formation + Delta-G solvation = 44.205254 kcal Electronic energy + Delta-G solvation = -21055.317121 eV Core-core repulsion = 17806.482503 eV Total energy + Delta-G solvation = -3248.834618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47330 -39.69748 -36.96378 -35.34444 -33.59866 -33.35763 -32.51406 -31.38680 -27.67312 -26.38526 -25.61472 -25.05362 -24.73396 -23.07332 -20.76043 -19.19400 -18.44652 -17.86046 -17.35987 -16.40167 -16.08560 -15.62444 -15.35613 -15.17341 -15.01608 -14.11323 -13.90528 -13.81988 -13.58100 -13.25760 -12.94978 -12.70650 -12.58503 -12.20030 -12.03925 -11.33359 -11.28730 -10.72578 -10.51872 -10.42232 -10.30365 -10.16732 -10.10610 -10.05855 -9.84795 -9.16246 -9.12665 -8.68145 -8.48695 -8.36613 -6.14237 -4.11391 0.34008 0.36036 2.79417 3.24478 3.27182 3.31760 3.38984 3.48225 3.56412 3.98061 4.11546 4.23067 4.36028 4.48122 4.57241 4.73408 5.09320 5.16653 5.29954 5.45026 5.65326 5.72932 5.76861 6.05618 6.08845 6.35631 6.38764 6.44726 6.54579 6.61982 6.72218 6.82211 6.97721 7.14094 7.24378 7.44100 7.73371 8.26533 8.27806 8.47035 8.87492 8.92183 9.49725 10.98883 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033984 B = 0.003267 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.715623 B = 8568.007433 C = 8927.470778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.029 3.971 3 C -0.147 4.147 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.250 1.250 12 C 0.160 3.840 13 N -0.736 5.736 14 C 0.703 3.297 15 O -0.592 6.592 16 N -0.749 5.749 17 C 0.197 3.803 18 C 0.053 3.947 19 C -0.101 4.101 20 C -0.119 4.119 21 C 0.040 3.960 22 N -0.242 5.242 23 N -0.224 5.224 24 H 0.020 0.980 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.392 0.608 34 H 0.394 0.606 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 5.478 23.549 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.037 3.963 13 N -0.391 5.391 14 C 0.402 3.598 15 O -0.471 6.471 16 N -0.406 5.406 17 C 0.071 3.929 18 C -0.092 4.092 19 C -0.131 4.131 20 C -0.148 4.148 21 C -0.124 4.124 22 N -0.083 5.083 23 N -0.067 5.067 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.391 5.503 23.267 24.749 hybrid contribution -2.232 0.836 -0.102 2.386 sum -8.623 6.339 23.165 25.518 Atomic orbital electron populations 1.22284 0.97900 0.99781 0.99852 1.18732 0.92480 0.92288 0.93779 1.22354 1.01273 0.98296 0.98466 1.20719 1.34030 1.12344 0.87952 0.90461 1.24970 0.94687 0.97278 0.95786 1.69953 1.48223 1.35908 0.98719 0.87292 0.79336 0.85606 0.75920 1.21351 1.23442 1.17582 1.21403 0.98462 0.95420 0.80970 1.45490 1.55816 1.33070 1.04676 1.15931 0.80439 0.82957 0.80436 1.90920 1.42570 1.27664 1.85908 1.44966 1.58202 1.33272 1.04180 1.19786 1.00868 0.94416 0.77834 1.22951 0.93278 0.95177 0.97759 1.22419 0.95107 1.00585 0.94949 1.22489 1.01331 0.94475 0.96532 1.24427 0.92632 0.96508 0.98826 1.73131 1.10327 1.21923 1.02947 1.73061 1.26792 1.00900 1.05945 0.96070 0.92582 0.93396 0.92728 0.94114 0.95242 0.92560 0.92068 0.91996 0.77371 0.77286 0.89498 0.89280 0.82775 0.82939 0.80925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -2.99 7.52 37.16 0.28 -2.72 16 4 C -0.51 -13.76 8.62 -34.44 -0.30 -14.06 16 5 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 6 C 0.08 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 8 Si 0.89 21.11 22.79 -169.99 -3.87 17.23 16 9 H -0.29 -6.81 7.10 56.52 0.40 -6.41 16 10 H -0.31 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.25 -5.40 4.65 56.52 0.26 -5.14 16 12 C 0.16 3.22 4.49 -4.04 -0.02 3.20 16 13 N -0.74 -12.09 5.01 -65.22 -0.33 -12.41 16 14 C 0.70 11.56 8.57 -86.92 -0.74 10.81 16 15 O -0.59 -12.09 16.34 5.28 0.09 -12.00 16 16 N -0.75 -9.05 5.55 -66.42 -0.37 -9.42 16 17 C 0.20 2.09 6.01 -5.20 -0.03 2.06 16 18 C 0.05 0.50 6.23 -82.42 -0.51 -0.02 16 19 C -0.10 -0.64 9.86 -39.20 -0.39 -1.03 16 20 C -0.12 -0.60 10.21 -39.21 -0.40 -1.00 16 21 C 0.04 0.27 11.31 -17.37 -0.20 0.07 16 22 N -0.24 -2.60 11.50 30.55 0.35 -2.25 16 23 N -0.22 -2.62 11.43 33.59 0.38 -2.24 16 24 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 25 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 26 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 29 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.39 5.58 6.27 -40.82 -0.26 5.32 16 34 H 0.39 3.99 8.48 -40.82 -0.35 3.64 16 35 H 0.09 0.83 8.06 -51.93 -0.42 0.41 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 39 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 316.12 15.07 4.76 4.76 Total: -1.00 -33.89 316.12 -5.57 -39.46 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.16 Total: 5.43 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.20 Total: -2.68 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.81 Total: -52.20 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -3.87 Total: 17.23 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.89 -5.57 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564655935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.669 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds