Wall clock time and date at job start Tue Mar 31 2020 00:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46998 * 2 1 4 4 C 1.50695 * 109.47469 * 239.99534 * 2 1 3 5 5 H 1.07993 * 120.00500 * 241.34549 * 4 2 1 6 6 C 1.37878 * 119.99620 * 61.34645 * 4 2 1 7 7 N 1.31516 * 120.00005 * 193.97431 * 6 4 2 8 8 Si 1.86796 * 120.00120 * 13.98128 * 6 4 2 9 9 H 1.48497 * 109.47586 * 84.54505 * 8 6 4 10 10 H 1.48504 * 109.47348 * 204.55036 * 8 6 4 11 11 H 1.48502 * 109.47043 * 324.54273 * 8 6 4 12 12 C 1.53006 * 109.46856 * 119.99623 * 2 1 3 13 13 N 1.46501 * 109.47276 * 300.00048 * 12 2 1 14 14 C 1.34776 * 120.00135 * 180.02562 * 13 12 2 15 15 O 1.21596 * 119.99763 * 0.02562 * 14 13 12 16 16 N 1.34770 * 119.99928 * 179.72840 * 14 13 12 17 17 C 1.46500 * 119.99820 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47278 * 179.97438 * 17 16 14 19 19 C 1.38609 * 120.07878 * 94.72210 * 18 17 16 20 20 C 1.38886 * 117.97020 * 179.74457 * 19 18 17 21 21 C 1.38603 * 117.96874 * 0.51669 * 20 19 18 22 22 N 1.31937 * 119.84553 * 359.73500 * 21 20 19 23 23 N 1.28348 * 122.18312 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46992 * 309.36716 * 1 2 3 25 25 H 1.08996 * 109.47130 * 69.36903 * 1 2 3 26 26 H 1.08999 * 109.46898 * 189.37054 * 1 2 3 27 27 H 1.09006 * 109.47263 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47090 * 299.99846 * 3 2 1 29 29 H 1.09002 * 109.47521 * 60.00012 * 3 2 1 30 30 H 0.97005 * 120.00048 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46653 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.46940 * 60.00161 * 12 2 1 33 33 H 0.96995 * 119.99757 * 0.02562 * 13 12 2 34 34 H 0.96994 * 120.00644 * 359.97438 * 16 14 13 35 35 H 1.09006 * 109.47019 * 299.99140 * 17 16 14 36 36 H 1.08997 * 109.47898 * 59.99104 * 17 16 14 37 37 H 1.08005 * 121.01516 * 359.97438 * 19 18 17 38 38 H 1.08001 * 121.01742 * 180.23117 * 20 19 18 39 39 H 1.07999 * 120.08068 * 179.75604 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6352 -1.6010 -1.1314 6 6 1.7224 -0.2235 -2.4824 7 7 1.9159 -0.9727 -3.5459 8 14 1.0277 1.5005 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2470 1.5864 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4906 3.6696 15 8 2.5774 -1.4787 3.7812 16 7 1.4328 0.1480 4.7700 17 6 1.7876 -0.3519 6.1006 18 6 1.1698 0.5343 7.1512 19 6 -0.0541 0.2003 7.7096 20 6 -0.5806 1.0452 8.6780 21 6 0.1452 2.1759 9.0184 22 7 1.3010 2.4162 8.4291 23 7 1.7897 1.6329 7.5376 24 1 -0.3633 0.6518 0.7945 25 1 -0.3633 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1673 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6981 -0.6299 -4.4268 31 1 3.1300 -0.7208 1.2496 32 1 1.6766 -1.7488 1.2494 33 1 0.9937 0.7579 2.3564 34 1 0.8784 0.9389 4.6810 35 1 1.4146 -1.3694 6.2179 36 1 2.8717 -0.3471 6.2135 37 1 -0.5805 -0.6918 7.4036 38 1 -1.5289 0.8303 9.1482 39 1 -0.2342 2.8584 9.7644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001564655935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:05 Heat of formation + Delta-G solvation = 16.566147 kcal Electronic energy + Delta-G solvation = -21056.515643 eV Core-core repulsion = 17806.482503 eV Total energy + Delta-G solvation = -3250.033139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.07764 -41.02067 -38.57831 -36.37722 -35.00087 -34.11340 -33.68531 -33.00155 -28.67832 -27.99999 -27.23512 -26.52282 -25.58766 -23.79663 -22.07340 -20.92162 -19.73560 -18.48107 -18.04191 -17.88686 -17.38472 -17.13095 -16.62427 -16.21345 -15.94974 -15.36253 -15.18079 -15.03674 -14.79029 -14.38711 -14.22992 -14.07346 -13.96936 -13.74671 -13.71772 -12.89702 -12.37985 -12.13253 -11.94905 -11.94441 -11.74956 -11.49907 -11.19505 -11.06279 -10.95329 -10.68230 -10.60638 -10.39419 -10.36372 -9.73798 -8.29038 -6.30535 -0.18543 -0.14143 1.37343 1.38998 1.51666 1.73433 2.17618 2.35754 2.59235 2.88755 3.07159 3.39747 3.46382 3.68553 3.84845 4.03873 4.09185 4.24250 4.36163 4.42797 4.46070 4.64168 4.76059 4.85232 4.86259 4.87915 4.96951 5.08044 5.09727 5.20208 5.28044 5.35691 5.44922 5.57355 5.73848 5.81390 5.98079 6.32703 6.73994 7.09615 7.34195 7.59067 7.69305 8.88258 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033984 B = 0.003267 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.715623 B = 8568.007433 C = 8927.470778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.518 4.518 5 H 0.029 0.971 6 C 0.017 3.983 7 N -0.947 5.947 8 Si 0.945 3.055 9 H -0.284 1.284 10 H -0.315 1.315 11 H -0.203 1.203 12 C 0.177 3.823 13 N -0.725 5.725 14 C 0.703 3.297 15 O -0.636 6.636 16 N -0.728 5.728 17 C 0.199 3.801 18 C 0.044 3.956 19 C -0.100 4.100 20 C -0.102 4.102 21 C 0.041 3.959 22 N -0.285 5.285 23 N -0.267 5.267 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.264 0.736 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.408 0.592 34 H 0.408 0.592 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.181 0.819 38 H 0.196 0.804 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.467 7.746 26.424 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.556 4.556 5 H 0.047 0.953 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.774 3.226 9 H -0.211 1.211 10 H -0.245 1.245 11 H -0.127 1.127 12 C 0.052 3.948 13 N -0.381 5.381 14 C 0.403 3.597 15 O -0.517 6.517 16 N -0.385 5.385 17 C 0.073 3.927 18 C -0.102 4.102 19 C -0.129 4.129 20 C -0.131 4.131 21 C -0.124 4.124 22 N -0.125 5.125 23 N -0.109 5.109 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.245 0.755 34 H 0.243 0.757 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.198 0.802 38 H 0.213 0.787 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.494 7.828 26.211 28.956 hybrid contribution -1.260 0.021 -0.859 1.525 sum -10.754 7.849 25.352 28.636 Atomic orbital electron populations 1.22196 0.95884 1.00722 1.00817 1.18657 0.93924 0.92964 0.91748 1.22295 1.00947 0.96957 1.00160 1.21039 1.32872 1.11126 0.90555 0.95309 1.25853 0.95418 1.01579 0.95206 1.70115 1.50779 1.38304 0.99413 0.86334 0.79380 0.79898 0.76974 1.21128 1.24466 1.12675 1.20900 0.97051 0.94702 0.82113 1.45096 1.56020 1.33296 1.03668 1.16019 0.80041 0.82593 0.81080 1.90900 1.44498 1.29758 1.86559 1.44758 1.57155 1.32970 1.03614 1.19809 0.99982 0.95532 0.77382 1.22749 0.94576 0.94856 0.97983 1.22726 0.93865 1.01561 0.94706 1.22965 1.02201 0.92806 0.95117 1.25031 0.91396 0.97547 0.98407 1.73024 1.12635 1.22809 1.04036 1.72932 1.28402 1.02189 1.07407 0.91597 0.93690 0.93880 0.93629 0.94698 0.90933 0.92674 0.94288 0.93992 0.75546 0.75695 0.88257 0.91377 0.80184 0.78696 0.77750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 7.53 71.98 0.54 -4.62 16 2 C 0.03 1.20 0.50 -52.93 -0.03 1.17 16 3 C -0.15 -5.53 7.52 71.98 0.54 -4.99 16 4 C -0.52 -28.64 8.62 25.60 0.22 -28.42 16 5 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 6 C 0.02 0.95 5.32 84.65 0.45 1.40 16 7 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 8 Si 0.94 42.76 22.79 68.60 1.56 44.33 16 9 H -0.28 -12.70 7.10 99.48 0.71 -11.99 16 10 H -0.32 -14.69 7.11 99.48 0.71 -13.99 16 11 H -0.20 -7.69 4.65 99.48 0.46 -7.23 16 12 C 0.18 7.10 4.49 86.38 0.39 7.49 16 13 N -0.73 -22.30 5.01 -478.52 -2.40 -24.69 16 14 C 0.70 22.26 8.57 179.06 1.53 23.79 16 15 O -0.64 -26.08 16.34 -4.02 -0.07 -26.14 16 16 N -0.73 -16.20 5.55 -482.30 -2.68 -18.88 16 17 C 0.20 3.99 6.01 85.63 0.51 4.51 16 18 C 0.04 0.75 6.23 42.63 0.27 1.02 16 19 C -0.10 -0.91 9.86 22.51 0.22 -0.69 16 20 C -0.10 -0.57 10.21 22.51 0.23 -0.34 16 21 C 0.04 0.41 11.31 84.76 0.96 1.37 16 22 N -0.28 -5.73 11.50 -57.26 -0.66 -6.39 16 23 N -0.27 -6.04 11.43 -47.63 -0.54 -6.59 16 24 H 0.07 1.86 7.13 -2.39 -0.02 1.85 16 25 H 0.04 1.77 4.30 -2.39 -0.01 1.76 16 26 H 0.04 1.62 8.12 -2.39 -0.02 1.61 16 27 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.03 1.37 2.25 -2.39 -0.01 1.36 16 29 H 0.07 2.10 6.86 -2.39 -0.02 2.09 16 30 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.41 9.90 6.27 -92.71 -0.58 9.32 16 34 H 0.41 7.06 8.48 -92.71 -0.79 6.27 16 35 H 0.10 1.75 8.06 -2.38 -0.02 1.73 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.20 -0.59 8.06 -2.91 -0.02 -0.61 16 39 H 0.21 0.51 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -79.44 316.12 0.84 -78.60 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -0.52 Total: 16.70 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.84 Total: 1.69 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -5.98 Total: -115.18 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.07 Total: -26.14 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.56 Total: 44.33 kcal Total: -79.44 0.84 -78.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564655935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.170 kcal (2) G-P(sol) polarization free energy of solvation -79.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds