Wall clock time and date at job start Tue Mar 31 2020 01:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46975 * 2 1 4 4 H 1.08997 * 109.47225 * 55.00096 * 3 2 1 5 5 C 1.50702 * 109.46825 * 175.00106 * 3 2 1 6 6 H 1.07998 * 119.99522 * 119.99924 * 5 3 2 7 7 C 1.37874 * 119.99967 * 299.99927 * 5 3 2 8 8 N 1.31515 * 120.00177 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47046 * 90.00183 * 9 7 5 11 11 H 1.48498 * 109.46712 * 209.99667 * 9 7 5 12 12 H 1.48489 * 109.47051 * 329.99847 * 9 7 5 13 13 N 1.46498 * 109.46911 * 294.99941 * 3 2 1 14 14 C 1.34775 * 119.99722 * 85.00421 * 13 3 2 15 15 O 1.21280 * 120.00580 * 359.97438 * 14 13 3 16 16 C 1.50709 * 119.99781 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.71158 * 59.39507 * 16 14 13 18 18 C 1.53430 * 109.71701 * 179.97438 * 16 14 13 19 19 C 1.53154 * 109.25251 * 168.38355 * 18 16 14 20 20 C 1.53306 * 109.49304 * 290.82370 * 19 18 16 21 21 N 1.46296 * 108.77369 * 50.11586 * 20 19 18 22 22 N 1.39761 * 128.30974 * 162.95177 * 21 20 19 23 23 C 1.30974 * 106.58451 * 180.08635 * 22 21 20 24 24 N 1.33473 * 109.00391 * 359.97438 * 23 22 21 25 25 C 1.30323 * 109.72756 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47151 * 299.99743 * 1 2 3 27 27 H 1.09001 * 109.47549 * 60.00078 * 1 2 3 28 28 H 1.08996 * 109.47573 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46796 * 239.99845 * 2 1 3 30 30 H 1.08996 * 109.46848 * 120.00008 * 2 1 3 31 31 H 0.96999 * 120.00230 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99969 * 264.99734 * 13 3 2 33 33 H 1.08998 * 109.50602 * 48.44469 * 18 16 14 34 34 H 1.09001 * 109.54367 * 288.33785 * 18 16 14 35 35 H 1.09003 * 109.46953 * 170.81519 * 19 18 16 36 36 H 1.09007 * 109.47143 * 50.82837 * 19 18 16 37 37 H 1.09002 * 109.58323 * 290.33424 * 20 19 18 38 38 H 1.08990 * 109.70557 * 169.97811 * 20 19 18 39 39 H 1.08001 * 125.49846 * 179.71643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1142 2.0849 11 1 6.4395 -0.3098 2.1549 12 1 6.6135 0.8416 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3397 2.6320 -0.4344 16 6 0.0365 3.3386 -2.6545 17 1 0.0769 2.6203 -3.4734 18 6 -1.3864 3.8981 -2.5269 19 6 -1.6740 4.8221 -3.7140 20 6 -0.8229 6.0914 -3.5922 21 7 0.5675 5.7047 -3.3525 22 7 1.7202 6.4816 -3.4980 23 6 2.7312 5.7148 -3.1733 24 7 2.2707 4.5086 -2.8348 25 6 0.9717 4.4890 -2.9372 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8292 -0.0610 2.9499 32 1 2.2719 2.1232 -1.9978 33 1 -1.4742 4.4611 -1.5977 34 1 -2.1024 3.0762 -2.5236 35 1 -2.7302 5.0918 -3.7170 36 1 -1.4280 4.3075 -4.6430 37 1 -1.1834 6.6944 -2.7588 38 1 -0.8881 6.6675 -4.5151 39 1 3.7701 6.0096 -3.1824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567316985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:23 Heat of formation + Delta-G solvation = 41.992426 kcal Electronic energy + Delta-G solvation = -22428.537081 eV Core-core repulsion = 19179.606507 eV Total energy + Delta-G solvation = -3248.930573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30791 -39.17180 -36.82438 -34.96165 -33.29802 -32.18801 -30.91616 -30.43285 -29.61779 -26.97809 -24.95572 -23.03354 -22.77117 -21.91419 -20.62327 -19.41332 -19.10929 -17.40848 -16.73286 -16.13953 -15.58027 -15.31983 -15.20156 -14.95461 -14.45359 -14.22826 -13.72743 -13.34766 -12.97463 -12.64962 -12.46010 -12.23496 -11.88790 -11.64897 -11.41441 -11.35341 -11.17503 -10.99900 -10.88343 -10.77900 -10.26327 -10.10289 -9.89477 -9.69836 -9.60626 -9.52833 -8.97374 -8.90181 -8.41289 -7.71956 -6.03948 -4.11353 1.62869 2.25818 3.01099 3.30902 3.32198 3.37557 3.40755 3.95674 4.14613 4.19134 4.41075 4.42546 4.60521 4.90688 4.95128 5.12417 5.17581 5.27605 5.34108 5.41036 5.55472 5.73121 5.78740 6.08208 6.37786 6.42161 6.48169 6.49832 6.68916 6.76192 7.07486 7.23809 7.41744 7.52364 7.70832 7.82272 7.99167 8.19593 8.25459 8.76215 8.87087 9.19628 9.55122 11.01724 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.005745 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.336534 B = 4872.444441 C = 6016.147118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.047 0.953 5 C -0.526 4.526 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.900 3.100 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.686 5.686 14 C 0.514 3.486 15 O -0.547 6.547 16 C -0.035 4.035 17 H 0.121 0.879 18 C -0.108 4.108 19 C -0.137 4.137 20 C 0.127 3.873 21 N -0.376 5.376 22 N -0.324 5.324 23 C 0.201 3.799 24 N -0.521 5.521 25 C 0.287 3.713 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.022 0.978 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.263 0.737 32 H 0.398 0.602 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 7.553 -13.037 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.564 4.564 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.728 3.272 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.332 5.332 14 C 0.296 3.704 15 O -0.426 6.426 16 C -0.059 4.059 17 H 0.139 0.861 18 C -0.146 4.146 19 C -0.175 4.175 20 C 0.005 3.995 21 N -0.167 5.167 22 N -0.151 5.151 23 C -0.102 4.102 24 N -0.247 5.247 25 C 0.010 3.990 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.232 0.768 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.015 7.944 -12.312 17.204 hybrid contribution 1.276 0.056 -0.252 1.302 sum -7.739 8.000 -12.564 16.785 Atomic orbital electron populations 1.21836 0.98432 0.97967 1.01140 1.21944 0.92537 0.99863 1.02354 1.18791 0.94363 0.89003 0.80968 0.93533 1.21270 0.90742 1.38232 1.06182 0.91779 1.24873 0.98468 0.94967 0.95446 1.69896 1.35006 1.38121 1.09399 0.86469 0.85125 0.77468 0.78172 1.20696 1.21231 1.19788 1.46442 1.13970 1.54002 1.18811 1.19556 0.83550 0.79795 0.87546 1.90682 1.51761 1.60704 1.39484 1.20291 0.92783 0.92589 1.00252 0.86086 1.21558 0.93890 1.00351 0.98849 1.22040 1.00559 0.94891 1.00002 1.21883 0.75629 0.98592 1.03417 1.50245 1.07150 1.09066 1.50279 1.77907 0.91503 1.18915 1.26820 1.26101 0.99896 0.87292 0.96900 1.70345 1.07099 1.23164 1.24136 1.23809 0.91329 0.88288 0.95575 0.93182 0.94358 0.95889 0.94975 0.88254 0.92732 0.76846 0.89624 0.88859 0.88271 0.90421 0.89416 0.88751 0.76578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 7 C 0.06 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.89 -25.12 11.29 55.43 0.63 -24.49 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 13 N -0.69 -14.58 4.70 -54.93 -0.26 -14.84 16 14 C 0.51 9.95 5.69 -10.98 -0.06 9.89 16 15 O -0.55 -12.15 12.94 5.56 0.07 -12.08 16 16 C -0.03 -0.49 2.92 -92.59 -0.27 -0.76 16 17 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.11 -1.20 4.75 -26.43 -0.13 -1.32 16 19 C -0.14 -1.02 5.95 -26.49 -0.16 -1.18 16 20 C 0.13 1.17 7.30 -3.99 -0.03 1.14 16 21 N -0.38 -5.19 4.04 -58.30 -0.24 -5.43 16 22 N -0.32 -4.89 12.74 29.38 0.37 -4.52 16 23 C 0.20 3.01 13.04 -91.39 -1.19 1.82 16 24 N -0.52 -8.90 10.04 -11.83 -0.12 -9.02 16 25 C 0.29 4.44 7.01 -155.78 -1.09 3.34 16 26 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 27 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.40 7.98 7.72 -40.82 -0.31 7.67 16 33 H 0.09 1.12 7.71 -51.93 -0.40 0.72 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.22 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 315.17 15.07 4.75 4.75 Total: -1.00 -32.71 315.17 -8.58 -41.29 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.46 Total: 7.32 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -3.31 Total: 0.92 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.39 Total: -58.29 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.71 -8.58 -41.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567316985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.282 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds