Wall clock time and date at job start Tue Mar 31 2020 01:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46975 * 2 1 4 4 H 1.08997 * 109.47225 * 55.00096 * 3 2 1 5 5 C 1.50702 * 109.46825 * 175.00106 * 3 2 1 6 6 H 1.07998 * 119.99522 * 119.99924 * 5 3 2 7 7 C 1.37874 * 119.99967 * 299.99927 * 5 3 2 8 8 N 1.31515 * 120.00177 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47046 * 90.00183 * 9 7 5 11 11 H 1.48498 * 109.46712 * 209.99667 * 9 7 5 12 12 H 1.48489 * 109.47051 * 329.99847 * 9 7 5 13 13 N 1.46498 * 109.46911 * 294.99941 * 3 2 1 14 14 C 1.34775 * 119.99722 * 85.00421 * 13 3 2 15 15 O 1.21280 * 120.00580 * 359.97438 * 14 13 3 16 16 C 1.50709 * 119.99781 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.71158 * 59.39507 * 16 14 13 18 18 C 1.53430 * 109.71701 * 179.97438 * 16 14 13 19 19 C 1.53154 * 109.25251 * 168.38355 * 18 16 14 20 20 C 1.53306 * 109.49304 * 290.82370 * 19 18 16 21 21 N 1.46296 * 108.77369 * 50.11586 * 20 19 18 22 22 N 1.39761 * 128.30974 * 162.95177 * 21 20 19 23 23 C 1.30974 * 106.58451 * 180.08635 * 22 21 20 24 24 N 1.33473 * 109.00391 * 359.97438 * 23 22 21 25 25 C 1.30323 * 109.72756 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47151 * 299.99743 * 1 2 3 27 27 H 1.09001 * 109.47549 * 60.00078 * 1 2 3 28 28 H 1.08996 * 109.47573 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46796 * 239.99845 * 2 1 3 30 30 H 1.08996 * 109.46848 * 120.00008 * 2 1 3 31 31 H 0.96999 * 120.00230 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99969 * 264.99734 * 13 3 2 33 33 H 1.08998 * 109.50602 * 48.44469 * 18 16 14 34 34 H 1.09001 * 109.54367 * 288.33785 * 18 16 14 35 35 H 1.09003 * 109.46953 * 170.81519 * 19 18 16 36 36 H 1.09007 * 109.47143 * 50.82837 * 19 18 16 37 37 H 1.09002 * 109.58323 * 290.33424 * 20 19 18 38 38 H 1.08990 * 109.70557 * 169.97811 * 20 19 18 39 39 H 1.08001 * 125.49846 * 179.71643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1142 2.0849 11 1 6.4395 -0.3098 2.1549 12 1 6.6135 0.8416 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3397 2.6320 -0.4344 16 6 0.0365 3.3386 -2.6545 17 1 0.0769 2.6203 -3.4734 18 6 -1.3864 3.8981 -2.5269 19 6 -1.6740 4.8221 -3.7140 20 6 -0.8229 6.0914 -3.5922 21 7 0.5675 5.7047 -3.3525 22 7 1.7202 6.4816 -3.4980 23 6 2.7312 5.7148 -3.1733 24 7 2.2707 4.5086 -2.8348 25 6 0.9717 4.4890 -2.9372 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8292 -0.0610 2.9499 32 1 2.2719 2.1232 -1.9978 33 1 -1.4742 4.4611 -1.5977 34 1 -2.1024 3.0762 -2.5236 35 1 -2.7302 5.0918 -3.7170 36 1 -1.4280 4.3075 -4.6430 37 1 -1.1834 6.6944 -2.7588 38 1 -0.8881 6.6675 -4.5151 39 1 3.7701 6.0096 -3.1824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567316985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:23 Heat of formation + Delta-G solvation = 20.901662 kcal Electronic energy + Delta-G solvation = -22429.451645 eV Core-core repulsion = 19179.606507 eV Total energy + Delta-G solvation = -3249.845137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -43.41017 -40.73943 -37.88065 -36.75188 -34.58639 -34.04698 -32.59407 -31.52991 -30.71555 -28.88820 -26.12446 -24.80106 -23.83194 -23.07357 -22.16296 -21.12064 -20.28415 -19.03016 -17.96324 -17.46704 -17.14401 -16.97367 -16.45188 -16.16546 -15.86261 -15.46956 -15.01821 -14.79991 -14.55149 -14.09735 -13.70433 -13.42797 -13.25647 -13.17110 -13.15731 -12.87232 -12.67466 -12.57205 -12.15032 -12.11162 -12.00029 -11.85084 -11.53704 -11.07516 -11.00937 -10.93450 -10.67583 -10.51082 -10.31602 -9.53671 -8.13083 -6.28515 0.50457 1.27443 1.44671 1.45111 1.56176 1.77476 1.94764 2.38625 2.64606 3.00167 3.16327 3.32622 3.52458 3.77068 3.96903 4.13336 4.14837 4.26544 4.29865 4.54769 4.62960 4.63377 4.75701 4.81210 4.90770 5.00690 5.10912 5.24581 5.30729 5.34007 5.41790 5.49345 5.61146 5.68303 5.75074 5.85188 5.98708 6.22207 6.79557 7.02957 7.07255 7.37289 7.59655 8.92211 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.005745 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.336534 B = 4872.444441 C = 6016.147118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.542 4.542 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.281 1.281 11 H -0.281 1.281 12 H -0.262 1.262 13 N -0.688 5.688 14 C 0.509 3.491 15 O -0.579 6.579 16 C -0.024 4.024 17 H 0.152 0.848 18 C -0.106 4.106 19 C -0.121 4.121 20 C 0.112 3.888 21 N -0.370 5.370 22 N -0.336 5.336 23 C 0.190 3.810 24 N -0.558 5.558 25 C 0.274 3.726 26 H 0.025 0.975 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 8.009 -15.286 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.580 4.580 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.187 1.187 13 N -0.335 5.335 14 C 0.294 3.706 15 O -0.460 6.460 16 C -0.048 4.048 17 H 0.169 0.831 18 C -0.144 4.144 19 C -0.159 4.159 20 C -0.008 4.008 21 N -0.162 5.162 22 N -0.164 5.164 23 C -0.112 4.112 24 N -0.285 5.285 25 C -0.004 4.004 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.154 0.846 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.136 0.864 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.711 8.425 -14.601 19.454 hybrid contribution 1.426 -0.019 0.476 1.503 sum -8.285 8.406 -14.125 18.407 Atomic orbital electron populations 1.21672 0.96534 0.99302 1.00455 1.21776 0.94169 0.98783 1.01285 1.18354 0.93495 0.89283 0.81254 0.98794 1.21560 0.91704 1.38279 1.06449 0.91707 1.25704 1.03027 0.94518 0.95059 1.70040 1.36841 1.38684 1.09843 0.85436 0.79600 0.77349 0.78501 1.20714 1.20696 1.18655 1.46252 1.15157 1.54562 1.17542 1.20404 0.82253 0.78815 0.89137 1.90666 1.52462 1.61528 1.41339 1.20328 0.94182 0.92634 0.97666 0.83110 1.21607 0.91957 1.01274 0.99582 1.22051 1.02195 0.93065 0.98609 1.22387 0.73467 1.00082 1.04826 1.50559 1.08305 1.08235 1.49080 1.77845 0.92058 1.19414 1.27109 1.26637 1.01143 0.86781 0.96660 1.70296 1.08393 1.24557 1.25296 1.23905 0.91209 0.89187 0.96066 0.95592 0.93236 0.93418 0.94032 0.91101 0.92690 0.76062 0.92078 0.87495 0.84596 0.88838 0.88891 0.86352 0.74223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.83 16 3 C 0.28 14.73 2.24 44.25 0.10 14.82 16 4 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 5 C -0.54 -29.91 8.73 25.60 0.22 -29.68 16 6 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.92 -53.34 11.29 21.45 0.24 -53.10 16 9 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 13 N -0.69 -29.69 4.70 -446.09 -2.10 -31.79 16 14 C 0.51 19.79 5.69 87.66 0.50 20.28 16 15 O -0.58 -26.26 12.94 -3.03 -0.04 -26.30 16 16 C -0.02 -0.65 2.92 -12.07 -0.04 -0.69 16 17 H 0.15 3.10 8.14 -2.38 -0.02 3.09 16 18 C -0.11 -2.09 4.75 30.79 0.15 -1.95 16 19 C -0.12 -1.31 5.95 30.75 0.18 -1.13 16 20 C 0.11 1.73 7.30 86.52 0.63 2.36 16 21 N -0.37 -9.55 4.04 -338.36 -1.37 -10.91 16 22 N -0.34 -9.74 12.74 -60.96 -0.78 -10.52 16 23 C 0.19 5.58 13.04 180.62 2.35 7.93 16 24 N -0.56 -18.83 10.04 -191.34 -1.92 -20.75 16 25 C 0.27 8.13 7.01 138.37 0.97 9.10 16 26 H 0.02 1.22 7.85 -2.39 -0.02 1.21 16 27 H 0.05 2.03 5.64 -2.39 -0.01 2.01 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 3.94 5.95 -2.39 -0.01 3.92 16 31 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.40 16.32 7.72 -92.70 -0.72 15.61 16 33 H 0.06 1.53 7.71 -2.39 -0.02 1.51 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.81 8.12 -2.38 -0.02 0.79 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.24 5.28 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -73.85 315.17 2.72 -71.13 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.35 Total: 24.72 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 6.30 Total: 11.84 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -5.92 Total: -127.07 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.04 Total: -26.30 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -73.85 2.72 -71.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567316985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.033 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds