Wall clock time and date at job start Tue Mar 31 2020 01:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08997 * 109.46624 * 55.00196 * 3 2 1 5 5 C 1.50700 * 109.46986 * 175.00138 * 3 2 1 6 6 H 1.07999 * 119.99988 * 120.00054 * 5 3 2 7 7 C 1.37885 * 120.00047 * 300.00234 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47163 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99897 * 9 7 5 13 13 N 1.46497 * 109.47133 * 295.00068 * 3 2 1 14 14 C 1.34781 * 119.99836 * 85.00165 * 13 3 2 15 15 O 1.21281 * 119.99724 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99965 * 180.02562 * 14 13 3 17 17 H 1.09007 * 109.70827 * 299.99607 * 16 14 13 18 18 C 1.53428 * 109.71695 * 179.39510 * 16 14 13 19 19 C 1.53159 * 109.25535 * 191.62977 * 18 16 14 20 20 C 1.53303 * 109.48666 * 69.17459 * 19 18 16 21 21 N 1.46298 * 108.77415 * 309.85550 * 20 19 18 22 22 N 1.39758 * 128.31869 * 197.08149 * 21 20 19 23 23 C 1.30976 * 106.58826 * 179.90303 * 22 21 20 24 24 N 1.33472 * 109.00237 * 0.03344 * 23 22 21 25 25 C 1.30275 * 109.75004 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.46667 * 299.99427 * 1 2 3 27 27 H 1.08996 * 109.47218 * 59.99859 * 1 2 3 28 28 H 1.08999 * 109.46636 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47249 * 240.00079 * 2 1 3 30 30 H 1.08996 * 109.47228 * 120.00698 * 2 1 3 31 31 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00203 * 264.99839 * 13 3 2 33 33 H 1.08994 * 109.50241 * 311.56632 * 18 16 14 34 34 H 1.08998 * 109.50439 * 71.69488 * 18 16 14 35 35 H 1.08998 * 109.46367 * 189.18164 * 19 18 16 36 36 H 1.09007 * 109.46899 * 309.16819 * 19 18 16 37 37 H 1.08996 * 109.58809 * 69.64648 * 20 19 18 38 38 H 1.08998 * 109.58452 * 190.07319 * 20 19 18 39 39 H 1.07995 * 125.49797 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4061 0.3417 2.1757 9 14 6.0050 0.8811 1.3817 10 1 6.4995 2.2814 1.3821 11 1 6.3978 0.2176 2.6508 12 1 6.5976 0.1472 0.2348 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3395 2.6319 -0.4342 16 6 0.0362 3.3377 -2.6547 17 1 0.7253 4.1540 -2.8716 18 6 -1.3920 3.8847 -2.5320 19 6 -1.8934 4.3031 -3.9174 20 6 -2.1056 3.0555 -4.7827 21 7 -0.9019 2.2267 -4.7172 22 7 -0.5141 1.1926 -5.5736 23 6 0.6319 0.7449 -5.1244 24 7 0.9753 1.4417 -4.0390 25 6 0.0629 2.3355 -3.7828 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0567 2.9522 32 1 2.2719 2.1232 -1.9978 33 1 -2.0444 3.1112 -2.1271 34 1 -1.3949 4.7488 -1.8676 35 1 -2.8368 4.8394 -3.8156 36 1 -1.1559 4.9519 -4.3901 37 1 -2.9589 2.4910 -4.4069 38 1 -2.2881 3.3537 -5.8151 39 1 1.2061 -0.0585 -5.5615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567316986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:25 Heat of formation + Delta-G solvation = 21.263526 kcal Electronic energy + Delta-G solvation = -22540.719420 eV Core-core repulsion = 19290.889975 eV Total energy + Delta-G solvation = -3249.829446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.40465 -40.73885 -37.88236 -36.75601 -34.58499 -34.03705 -32.64868 -31.53378 -30.70889 -28.90166 -26.12107 -24.83071 -23.82652 -23.07392 -22.18536 -21.13519 -20.28623 -19.02290 -17.88681 -17.53430 -17.21027 -16.98306 -16.38733 -16.14764 -15.79686 -15.52239 -15.10179 -14.77712 -14.58801 -14.10849 -13.67486 -13.47109 -13.27830 -13.20009 -13.12920 -12.89525 -12.63824 -12.58130 -12.16733 -12.12628 -12.02260 -11.88641 -11.59084 -11.08122 -11.01734 -10.93283 -10.67062 -10.50899 -10.31279 -9.54205 -8.12683 -6.29005 0.51323 1.27795 1.46622 1.48625 1.56228 1.77973 1.94882 2.39239 2.64949 3.00084 3.16605 3.32659 3.52177 3.76989 3.97428 4.13450 4.14866 4.26756 4.30280 4.48466 4.53852 4.63133 4.74540 4.75345 4.90495 5.00654 5.08049 5.22293 5.25185 5.34348 5.42858 5.43980 5.57754 5.66836 5.75205 5.82052 5.96095 6.19305 6.78142 7.02891 7.07979 7.36979 7.59508 8.92645 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.005123 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.176929 B = 5464.003898 C = 5785.113957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 C 0.281 3.719 4 H 0.003 0.997 5 C -0.546 4.546 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.688 5.688 14 C 0.510 3.490 15 O -0.579 6.579 16 C -0.026 4.026 17 H 0.149 0.851 18 C -0.106 4.106 19 C -0.122 4.122 20 C 0.113 3.887 21 N -0.370 5.370 22 N -0.335 5.335 23 C 0.190 3.810 24 N -0.557 5.557 25 C 0.276 3.724 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 7.959 -15.171 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.584 4.584 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.336 5.336 14 C 0.294 3.706 15 O -0.460 6.460 16 C -0.050 4.050 17 H 0.166 0.834 18 C -0.144 4.144 19 C -0.160 4.160 20 C -0.007 4.007 21 N -0.162 5.162 22 N -0.163 5.163 23 C -0.112 4.112 24 N -0.284 5.284 25 C -0.002 4.002 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.952 7.526 -14.812 19.367 hybrid contribution 1.220 -0.441 0.247 1.320 sum -8.732 7.085 -14.565 18.400 Atomic orbital electron populations 1.21617 0.97218 0.98673 0.99965 1.21730 0.93488 0.99551 1.00733 1.18343 0.93600 0.88965 0.81379 0.97872 1.21525 0.91516 1.38903 1.06468 0.91453 1.25731 1.03181 0.94374 0.94978 1.70041 1.37026 1.38549 1.09737 0.85454 0.79293 0.78505 0.77413 1.19488 1.21103 1.19288 1.46257 1.15518 1.54520 1.17281 1.20398 0.82119 0.79065 0.89000 1.90663 1.52159 1.61319 1.41840 1.20311 1.03178 0.94911 0.86556 0.83400 1.21601 0.91036 1.02616 0.99144 1.22052 1.05890 0.95464 0.92568 1.22374 0.82999 0.90925 1.04394 1.50569 1.19243 1.26402 1.19963 1.77851 1.16742 1.04500 1.17234 1.26641 0.92553 1.00294 0.91675 1.70256 1.29982 1.09829 1.18377 1.23831 0.86649 0.96651 0.93033 0.94997 0.94520 0.94256 0.94986 0.91022 0.92640 0.76037 0.91891 0.87751 0.84636 0.88969 0.88760 0.86383 0.74161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -6.01 5.45 30.60 0.17 -5.84 16 3 C 0.28 14.77 2.24 44.25 0.10 14.86 16 4 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 5 C -0.55 -29.67 8.73 25.60 0.22 -29.44 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.92 -52.98 11.31 21.45 0.24 -52.74 16 9 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.69 -29.79 4.70 -446.10 -2.10 -31.89 16 14 C 0.51 19.88 5.70 87.66 0.50 20.38 16 15 O -0.58 -26.31 12.95 -3.03 -0.04 -26.35 16 16 C -0.03 -0.70 2.92 -12.07 -0.04 -0.73 16 17 H 0.15 3.18 8.14 -2.38 -0.02 3.16 16 18 C -0.11 -2.11 4.75 30.79 0.15 -1.96 16 19 C -0.12 -1.33 5.95 30.75 0.18 -1.15 16 20 C 0.11 1.69 7.30 86.52 0.63 2.32 16 21 N -0.37 -9.27 4.04 -338.34 -1.37 -10.63 16 22 N -0.33 -9.36 12.74 -60.97 -0.78 -10.14 16 23 C 0.19 5.34 13.04 180.62 2.35 7.70 16 24 N -0.56 -18.07 9.98 -191.33 -1.91 -19.98 16 25 C 0.28 7.99 7.01 138.36 0.97 8.96 16 26 H 0.03 1.58 7.85 -2.39 -0.02 1.56 16 27 H 0.04 1.71 5.64 -2.39 -0.01 1.69 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.07 4.09 5.96 -2.39 -0.01 4.08 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.40 16.38 7.66 -92.71 -0.71 15.67 16 33 H 0.06 1.56 7.71 -2.39 -0.02 1.54 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.83 8.12 -2.38 -0.02 0.81 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.24 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -72.34 315.09 2.73 -69.60 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.36 Total: 25.74 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 6.30 Total: 11.52 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -5.91 Total: -125.38 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.04 Total: -26.35 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.34 2.73 -69.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567316986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.865 kcal (2) G-P(sol) polarization free energy of solvation -72.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds