Wall clock time and date at job start Tue Mar 31 2020 01:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46957 * 2 1 4 4 H 1.09001 * 109.47333 * 304.99649 * 3 2 1 5 5 C 1.50705 * 109.47099 * 184.99978 * 3 2 1 6 6 H 1.07999 * 120.00048 * 240.00222 * 5 3 2 7 7 C 1.37874 * 119.99823 * 59.99957 * 5 3 2 8 8 N 1.31514 * 120.00192 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00007 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47128 * 59.99520 * 9 7 5 11 11 H 1.48498 * 109.47343 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46781 * 299.99562 * 9 7 5 13 13 N 1.46498 * 109.47592 * 64.99979 * 3 2 1 14 14 C 1.34775 * 119.99722 * 275.00098 * 13 3 2 15 15 O 1.21280 * 120.00580 * 359.97438 * 14 13 3 16 16 C 1.50709 * 119.99781 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.74709 * 59.36929 * 16 14 13 18 18 C 1.53430 * 109.71701 * 179.97438 * 16 14 13 19 19 C 1.53154 * 109.25251 * 168.38355 * 18 16 14 20 20 C 1.53306 * 109.49304 * 290.82370 * 19 18 16 21 21 N 1.46296 * 108.77369 * 50.11586 * 20 19 18 22 22 N 1.39761 * 128.30974 * 162.95177 * 21 20 19 23 23 C 1.30974 * 106.58451 * 180.08635 * 22 21 20 24 24 N 1.33473 * 109.00391 * 359.97438 * 23 22 21 25 25 C 1.30323 * 109.72756 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47216 * 300.00021 * 1 2 3 27 27 H 1.09000 * 109.46919 * 60.00153 * 1 2 3 28 28 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47216 * 239.99979 * 2 1 3 30 30 H 1.09000 * 109.46919 * 119.99847 * 2 1 3 31 31 H 0.97002 * 120.00124 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99969 * 94.99411 * 13 3 2 33 33 H 1.08998 * 109.50602 * 48.44469 * 18 16 14 34 34 H 1.09001 * 109.54367 * 288.33785 * 18 16 14 35 35 H 1.09003 * 109.46953 * 170.81519 * 19 18 16 36 36 H 1.09007 * 109.47143 * 50.82837 * 19 18 16 37 37 H 1.09002 * 109.58323 * 290.33424 * 20 19 18 38 38 H 1.08990 * 109.70557 * 169.97811 * 20 19 18 39 39 H 1.08001 * 125.49846 * 179.71643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1453 -0.2343 11 1 6.3978 0.2168 -2.6504 12 1 6.5004 2.2800 -1.3809 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3393 2.6327 0.4340 16 6 0.0362 3.3378 2.6547 17 1 0.7315 4.1471 2.8779 18 6 -1.3862 3.8986 2.5267 19 6 -1.8901 4.3180 3.9108 20 6 -2.1183 3.0703 4.7719 21 7 -0.9224 2.2299 4.7094 22 7 -0.5489 1.1895 5.5645 23 6 0.5946 0.7317 5.1192 24 7 0.9500 1.4284 4.0376 25 6 0.0467 2.3316 3.7796 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0619 -2.9494 32 1 2.2719 2.1232 1.9978 33 1 -2.0439 3.1323 2.1166 34 1 -1.3786 4.7642 1.8644 35 1 -2.8280 4.8635 3.8060 36 1 -1.1488 4.9585 4.3887 37 1 -2.9754 2.5151 4.3908 38 1 -2.3040 3.3654 5.8045 39 1 1.1608 -0.0761 5.5588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567316987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:29 Heat of formation + Delta-G solvation = 41.873305 kcal Electronic energy + Delta-G solvation = -22537.794344 eV Core-core repulsion = 19288.858605 eV Total energy + Delta-G solvation = -3248.935739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33112 -39.16834 -36.83183 -34.95327 -33.30348 -32.20005 -30.89942 -30.46964 -29.61442 -26.97871 -24.96603 -23.04957 -22.75719 -21.93754 -20.62673 -19.40647 -19.10421 -17.42124 -16.68988 -16.20071 -15.66363 -15.35611 -15.15225 -14.93183 -14.42520 -14.20012 -13.83213 -13.22047 -13.12401 -12.63595 -12.38826 -12.24678 -11.93682 -11.61013 -11.39854 -11.36170 -11.16145 -11.00803 -10.92849 -10.75596 -10.27305 -10.10497 -9.91578 -9.71992 -9.60035 -9.52388 -8.98241 -8.90303 -8.42082 -7.71054 -6.05302 -4.13789 1.60943 2.23893 2.98772 3.30534 3.31480 3.35699 3.37760 3.95723 4.12863 4.18089 4.39339 4.42398 4.59821 4.88489 4.94100 5.11777 5.17200 5.26031 5.33490 5.40874 5.54391 5.73299 5.79250 6.07897 6.35380 6.45939 6.47239 6.54087 6.73047 6.74514 7.15026 7.25029 7.44892 7.52945 7.70858 7.82520 7.97789 8.17011 8.25832 8.76192 8.83728 9.19286 9.52923 11.00061 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.005113 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.990929 B = 5474.639762 C = 5788.180022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.686 5.686 14 C 0.514 3.486 15 O -0.547 6.547 16 C -0.036 4.036 17 H 0.122 0.878 18 C -0.108 4.108 19 C -0.137 4.137 20 C 0.127 3.873 21 N -0.375 5.375 22 N -0.323 5.323 23 C 0.200 3.800 24 N -0.523 5.523 25 C 0.289 3.711 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.019 0.981 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.398 0.602 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 6.812 13.254 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.332 5.332 14 C 0.296 3.704 15 O -0.426 6.426 16 C -0.060 4.060 17 H 0.140 0.860 18 C -0.146 4.146 19 C -0.175 4.175 20 C 0.005 3.995 21 N -0.167 5.167 22 N -0.151 5.151 23 C -0.103 4.103 24 N -0.249 5.249 25 C 0.011 3.989 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.232 0.768 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.691 6.349 12.855 17.306 hybrid contribution 1.230 -0.073 0.342 1.278 sum -8.462 6.276 13.197 16.886 Atomic orbital electron populations 1.21807 0.98645 0.97795 1.00887 1.21894 0.92346 0.99870 1.02244 1.18785 0.94173 0.89231 0.80839 0.93413 1.21202 0.90744 1.38840 1.06074 0.92094 1.24867 0.98475 0.94869 0.95421 1.69890 1.35129 1.37756 1.09399 0.86530 0.85058 0.78255 0.77370 1.20153 1.21238 1.20244 1.46443 1.14292 1.53985 1.18525 1.19549 0.83438 0.80031 0.87408 1.90682 1.51571 1.60424 1.39958 1.20302 1.00627 0.94935 0.90138 0.85994 1.21559 0.93696 1.03012 0.96382 1.22043 1.03787 0.96022 0.95660 1.21889 0.84701 0.90479 1.02460 1.50243 1.18943 1.26368 1.21128 1.77909 1.16965 1.03640 1.16587 1.26091 0.92200 0.99857 0.92138 1.70334 1.28732 1.08617 1.17248 1.23807 0.86138 0.96433 0.92476 0.94533 0.93303 0.96142 0.88453 0.94836 0.92618 0.76840 0.89655 0.88808 0.88259 0.90399 0.89415 0.88740 0.76618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.52 37.16 0.32 -2.80 16 2 C -0.12 -3.14 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.91 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.96 11.29 55.43 0.63 -24.33 16 9 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.69 -14.59 4.70 -54.93 -0.26 -14.85 16 14 C 0.51 9.96 5.69 -10.98 -0.06 9.90 16 15 O -0.55 -12.16 12.95 5.56 0.07 -12.09 16 16 C -0.04 -0.51 2.92 -92.59 -0.27 -0.78 16 17 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 18 C -0.11 -1.20 4.75 -26.43 -0.13 -1.32 16 19 C -0.14 -1.02 5.95 -26.49 -0.16 -1.17 16 20 C 0.13 1.15 7.30 -3.99 -0.03 1.12 16 21 N -0.38 -5.08 4.04 -58.30 -0.24 -5.32 16 22 N -0.32 -4.78 12.74 29.38 0.37 -4.40 16 23 C 0.20 2.91 13.04 -91.39 -1.19 1.72 16 24 N -0.52 -8.69 10.04 -11.83 -0.12 -8.81 16 25 C 0.29 4.38 7.01 -155.78 -1.09 3.29 16 26 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 27 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 32 H 0.40 7.99 7.72 -40.82 -0.31 7.68 16 33 H 0.08 1.11 7.71 -51.93 -0.40 0.71 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.22 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 315.17 15.07 4.75 4.75 Total: -1.00 -32.42 315.17 -8.58 -41.01 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.46 Total: 7.57 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.31 Total: 0.65 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.39 Total: -57.71 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.42 -8.58 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567316987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.881 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds