Wall clock time and date at job start Tue Mar 31 2020 01:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46957 * 2 1 4 4 H 1.09001 * 109.47333 * 304.99649 * 3 2 1 5 5 C 1.50705 * 109.47099 * 184.99978 * 3 2 1 6 6 H 1.07999 * 120.00048 * 240.00222 * 5 3 2 7 7 C 1.37874 * 119.99823 * 59.99957 * 5 3 2 8 8 N 1.31514 * 120.00192 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00007 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47128 * 59.99520 * 9 7 5 11 11 H 1.48498 * 109.47343 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46781 * 299.99562 * 9 7 5 13 13 N 1.46498 * 109.47592 * 64.99979 * 3 2 1 14 14 C 1.34775 * 119.99722 * 275.00098 * 13 3 2 15 15 O 1.21280 * 120.00580 * 359.97438 * 14 13 3 16 16 C 1.50709 * 119.99781 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.74709 * 59.36929 * 16 14 13 18 18 C 1.53430 * 109.71701 * 179.97438 * 16 14 13 19 19 C 1.53154 * 109.25251 * 168.38355 * 18 16 14 20 20 C 1.53306 * 109.49304 * 290.82370 * 19 18 16 21 21 N 1.46296 * 108.77369 * 50.11586 * 20 19 18 22 22 N 1.39761 * 128.30974 * 162.95177 * 21 20 19 23 23 C 1.30974 * 106.58451 * 180.08635 * 22 21 20 24 24 N 1.33473 * 109.00391 * 359.97438 * 23 22 21 25 25 C 1.30323 * 109.72756 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47216 * 300.00021 * 1 2 3 27 27 H 1.09000 * 109.46919 * 60.00153 * 1 2 3 28 28 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47216 * 239.99979 * 2 1 3 30 30 H 1.09000 * 109.46919 * 119.99847 * 2 1 3 31 31 H 0.97002 * 120.00124 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99969 * 94.99411 * 13 3 2 33 33 H 1.08998 * 109.50602 * 48.44469 * 18 16 14 34 34 H 1.09001 * 109.54367 * 288.33785 * 18 16 14 35 35 H 1.09003 * 109.46953 * 170.81519 * 19 18 16 36 36 H 1.09007 * 109.47143 * 50.82837 * 19 18 16 37 37 H 1.09002 * 109.58323 * 290.33424 * 20 19 18 38 38 H 1.08990 * 109.70557 * 169.97811 * 20 19 18 39 39 H 1.08001 * 125.49846 * 179.71643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1453 -0.2343 11 1 6.3978 0.2168 -2.6504 12 1 6.5004 2.2800 -1.3809 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3393 2.6327 0.4340 16 6 0.0362 3.3378 2.6547 17 1 0.7315 4.1471 2.8779 18 6 -1.3862 3.8986 2.5267 19 6 -1.8901 4.3180 3.9108 20 6 -2.1183 3.0703 4.7719 21 7 -0.9224 2.2299 4.7094 22 7 -0.5489 1.1895 5.5645 23 6 0.5946 0.7317 5.1192 24 7 0.9500 1.4284 4.0376 25 6 0.0467 2.3316 3.7796 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0619 -2.9494 32 1 2.2719 2.1232 1.9978 33 1 -2.0439 3.1323 2.1166 34 1 -1.3786 4.7642 1.8644 35 1 -2.8280 4.8635 3.8060 36 1 -1.1488 4.9585 4.3887 37 1 -2.9754 2.5151 4.3908 38 1 -2.3040 3.3654 5.8045 39 1 1.1608 -0.0761 5.5588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567316987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:28 Heat of formation + Delta-G solvation = 21.228441 kcal Electronic energy + Delta-G solvation = -22538.689572 eV Core-core repulsion = 19288.858605 eV Total energy + Delta-G solvation = -3249.830967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.40635 -40.73873 -37.88262 -36.75690 -34.58125 -34.03804 -32.64915 -31.53658 -30.70565 -28.90209 -26.12259 -24.83116 -23.82512 -23.07569 -22.18513 -21.13417 -20.28621 -19.02420 -17.88658 -17.53650 -17.21040 -16.98120 -16.38457 -16.14901 -15.79605 -15.52281 -15.09955 -14.77887 -14.58690 -14.10962 -13.67450 -13.47161 -13.27845 -13.19698 -13.12946 -12.89523 -12.63807 -12.58086 -12.16670 -12.12531 -12.02266 -11.88855 -11.59028 -11.07942 -11.01710 -10.93054 -10.67039 -10.50931 -10.31370 -9.54215 -8.12531 -6.29005 0.51402 1.27697 1.46639 1.48680 1.56249 1.78172 1.94799 2.39213 2.64957 3.00251 3.16678 3.32810 3.52221 3.76851 3.97329 4.13492 4.14712 4.26759 4.30297 4.48494 4.54014 4.63173 4.74647 4.75310 4.90429 5.00598 5.08115 5.22351 5.25208 5.34268 5.42888 5.44050 5.57820 5.66850 5.75245 5.82154 5.96055 6.19538 6.78148 7.02864 7.07962 7.37031 7.59475 8.92696 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.005113 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.990929 B = 5474.639762 C = 5788.180022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 C 0.281 3.719 4 H 0.003 0.997 5 C -0.546 4.546 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.688 5.688 14 C 0.510 3.490 15 O -0.579 6.579 16 C -0.026 4.026 17 H 0.149 0.851 18 C -0.106 4.106 19 C -0.122 4.122 20 C 0.113 3.887 21 N -0.369 5.369 22 N -0.335 5.335 23 C 0.190 3.810 24 N -0.557 5.557 25 C 0.276 3.724 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 8.013 15.149 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.336 5.336 14 C 0.294 3.706 15 O -0.460 6.460 16 C -0.050 4.050 17 H 0.166 0.834 18 C -0.144 4.144 19 C -0.160 4.160 20 C -0.007 4.007 21 N -0.161 5.161 22 N -0.164 5.164 23 C -0.112 4.112 24 N -0.284 5.284 25 C -0.002 4.002 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.937 7.577 14.791 19.363 hybrid contribution 1.214 -0.444 -0.248 1.316 sum -8.723 7.133 14.543 18.398 Atomic orbital electron populations 1.21617 0.97235 0.98666 0.99954 1.21730 0.93472 0.99556 1.00756 1.18344 0.93600 0.88964 0.81375 0.97877 1.21525 0.91515 1.38914 1.06454 0.91442 1.25727 1.03175 0.94355 0.95001 1.70036 1.37039 1.38402 1.09879 0.85456 0.79300 0.78508 0.77409 1.19298 1.21107 1.19476 1.46250 1.15504 1.54526 1.17274 1.20395 0.82112 0.79057 0.88994 1.90663 1.52163 1.61330 1.41836 1.20313 1.03220 0.94788 0.86630 0.83394 1.21602 0.91156 1.02530 0.99133 1.22048 1.05835 0.95457 0.92618 1.22373 0.83275 0.90638 1.04419 1.50547 1.19403 1.26005 1.20167 1.77854 1.17113 1.04145 1.17246 1.26642 0.92427 1.00340 0.91760 1.70289 1.30131 1.09660 1.18369 1.23828 0.86660 0.96614 0.93074 0.94520 0.95015 0.94266 0.90987 0.94986 0.92639 0.76057 0.91892 0.87750 0.84636 0.88964 0.88783 0.86374 0.74162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.96 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.76 2.24 44.25 0.10 14.86 16 4 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 5 C -0.55 -29.64 8.73 25.60 0.22 -29.42 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.92 -52.96 11.29 21.45 0.24 -52.72 16 9 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 13 N -0.69 -29.76 4.70 -446.09 -2.10 -31.86 16 14 C 0.51 19.88 5.69 87.66 0.50 20.38 16 15 O -0.58 -26.32 12.95 -3.03 -0.04 -26.36 16 16 C -0.03 -0.69 2.92 -12.07 -0.04 -0.73 16 17 H 0.15 3.17 8.14 -2.39 -0.02 3.15 16 18 C -0.11 -2.12 4.75 30.79 0.15 -1.97 16 19 C -0.12 -1.33 5.95 30.75 0.18 -1.15 16 20 C 0.11 1.69 7.30 86.52 0.63 2.32 16 21 N -0.37 -9.26 4.04 -338.36 -1.37 -10.63 16 22 N -0.34 -9.38 12.74 -60.96 -0.78 -10.15 16 23 C 0.19 5.34 13.04 180.62 2.35 7.70 16 24 N -0.56 -18.08 10.04 -191.34 -1.92 -20.00 16 25 C 0.28 7.99 7.01 138.37 0.97 8.96 16 26 H 0.04 1.71 5.65 -2.39 -0.01 1.69 16 27 H 0.03 1.58 7.85 -2.39 -0.02 1.56 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 4.12 5.95 -2.39 -0.01 4.10 16 30 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.40 16.35 7.72 -92.70 -0.72 15.63 16 33 H 0.06 1.56 7.71 -2.39 -0.02 1.54 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.83 8.12 -2.38 -0.02 0.81 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.24 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -72.34 315.17 2.72 -69.62 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.35 Total: 25.72 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.30 Total: 11.53 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.92 Total: -125.36 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.04 Total: -26.36 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.34 2.72 -69.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567316987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.853 kcal (2) G-P(sol) polarization free energy of solvation -72.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds