Wall clock time and date at job start Tue Mar 31 2020 01:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 N 1.46502 * 109.47070 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00327 * 275.31129 * 4 3 2 6 6 H 1.08008 * 119.99944 * 37.57408 * 5 4 3 7 7 C 1.38816 * 120.00246 * 217.58035 * 5 4 3 8 8 N 1.31621 * 119.99591 * 21.41584 * 7 5 4 9 9 Si 1.86796 * 120.00034 * 201.41941 * 7 5 4 10 10 H 1.48498 * 109.46993 * 59.99938 * 9 7 5 11 11 H 1.48504 * 109.46827 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47291 * 299.99576 * 9 7 5 13 13 C 1.46498 * 119.99785 * 95.30675 * 4 3 2 14 14 C 1.53005 * 109.47487 * 269.99992 * 13 4 3 15 15 N 1.46498 * 109.47487 * 180.02562 * 14 13 4 16 16 C 1.34770 * 119.99882 * 179.97438 * 15 14 13 17 17 O 1.21468 * 120.00268 * 0.02562 * 16 15 14 18 18 C 1.48539 * 120.00065 * 180.02562 * 16 15 14 19 19 N 1.32463 * 119.18160 * 359.73002 * 18 16 15 20 20 C 1.32117 * 120.76387 * 179.71893 * 19 18 16 21 21 C 1.38805 * 119.16602 * 0.54368 * 20 19 18 22 22 C 1.38799 * 118.50234 * 359.73400 * 21 20 19 23 23 N 1.32107 * 119.16726 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.47122 * 300.00339 * 1 2 3 25 25 H 1.09000 * 109.46621 * 60.00493 * 1 2 3 26 26 H 1.09007 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47167 * 239.99185 * 2 1 3 28 28 H 1.09006 * 109.46657 * 119.99965 * 2 1 3 29 29 H 1.09001 * 109.47206 * 59.99981 * 3 2 1 30 30 H 1.09000 * 109.47031 * 299.99256 * 3 2 1 31 31 H 0.96995 * 119.99599 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47315 * 150.00325 * 13 4 3 33 33 H 1.08995 * 109.47263 * 29.99844 * 13 4 3 34 34 H 1.09003 * 109.46571 * 59.99877 * 14 13 4 35 35 H 1.09007 * 109.46850 * 300.00631 * 14 13 4 36 36 H 0.96999 * 119.99603 * 0.02562 * 15 14 13 37 37 H 1.08002 * 120.41501 * 180.27987 * 20 19 18 38 38 H 1.07995 * 120.74417 * 179.75267 * 21 20 19 39 39 H 1.08001 * 120.41274 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.3329 1.1817 6 1 3.8170 0.6875 1.9636 7 6 5.3613 2.0514 1.3741 8 7 5.6020 3.1240 0.6501 9 14 6.5968 1.4961 2.6604 10 1 7.0657 0.1247 2.3367 11 1 7.7548 2.4257 2.6682 12 1 5.9524 1.4961 3.9982 13 6 4.2380 1.5597 -1.2624 14 6 4.4933 0.1641 -1.8354 15 7 5.2268 0.2812 -3.0981 16 6 5.5645 -0.8271 -3.7865 17 8 5.2604 -1.9231 -3.3602 18 6 6.3088 -0.7084 -5.0665 19 7 6.6275 0.4950 -5.5190 20 6 7.2939 0.6367 -6.6510 21 6 7.6496 -0.4944 -7.3727 22 6 7.2942 -1.7389 -6.8712 23 7 6.6329 -1.8082 -5.7297 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8901 31 1 6.4211 3.6258 0.7843 32 1 5.1904 2.0592 -1.0848 33 1 3.6492 2.1414 -1.9716 34 1 3.5409 -0.3355 -2.0129 35 1 5.0821 -0.4177 -1.1261 36 1 5.4700 1.1565 -3.4382 37 1 7.5548 1.6204 -7.0125 38 1 8.1910 -0.4080 -8.3031 39 1 7.5556 -2.6393 -7.4073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567434902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:43 Heat of formation + Delta-G solvation = 31.796751 kcal Electronic energy + Delta-G solvation = -21199.636567 eV Core-core repulsion = 17950.263876 eV Total energy + Delta-G solvation = -3249.372691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30759 -38.90457 -36.46124 -34.52703 -33.76610 -32.86503 -32.41615 -30.75839 -28.32664 -25.57354 -25.42561 -24.72718 -23.26809 -21.18383 -20.65305 -20.11071 -18.33068 -17.71098 -16.66244 -16.14588 -15.61916 -15.32197 -15.07491 -14.91097 -14.40561 -14.17325 -13.82792 -13.77434 -13.44005 -12.94094 -12.76474 -12.55642 -11.55782 -11.50389 -11.41971 -11.16588 -11.14842 -10.91981 -10.71170 -10.44585 -10.34631 -10.08304 -9.96707 -9.88641 -9.84940 -9.59729 -9.51594 -8.57511 -8.43661 -6.61018 -5.82251 -3.41140 0.30020 0.83224 2.77950 2.99662 3.38005 3.43144 3.47520 3.80168 3.80961 4.26389 4.32199 4.49292 4.66461 4.76139 5.08964 5.29202 5.42240 5.50487 5.69254 5.78741 5.98541 6.03864 6.12904 6.21730 6.30647 6.44404 6.54161 6.64350 6.67225 6.68503 6.82372 6.99978 7.01674 7.20516 7.53202 7.63117 7.81682 7.97327 8.46131 8.50199 9.15672 9.77692 10.35566 11.17863 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.004591 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.045292 B = 6098.045419 C = 7169.034733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.138 3.862 14 C 0.096 3.904 15 N -0.693 5.693 16 C 0.573 3.427 17 O -0.512 6.512 18 C 0.292 3.708 19 N -0.493 5.493 20 C 0.146 3.854 21 C -0.216 4.216 22 C 0.143 3.857 23 N -0.471 5.471 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.256 0.744 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.408 0.592 37 H 0.176 0.824 38 H 0.153 0.847 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 -3.253 -15.906 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.010 3.990 14 C -0.029 4.029 15 N -0.345 5.345 16 C 0.352 3.648 17 O -0.385 6.385 18 C 0.021 3.979 19 N -0.209 5.209 20 C -0.021 4.021 21 C -0.238 4.238 22 C -0.023 4.023 23 N -0.186 5.186 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.244 0.756 37 H 0.193 0.807 38 H 0.170 0.830 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.301 -3.972 -14.630 15.215 hybrid contribution 1.461 0.145 -0.555 1.569 sum 2.761 -3.827 -15.185 15.901 Atomic orbital electron populations 1.21721 0.97351 1.00396 1.00979 1.22195 0.93810 1.00953 1.01620 1.20943 0.85006 0.92977 0.98951 1.43593 0.99446 1.84775 1.02018 1.18985 1.05793 1.20531 0.93955 0.92067 1.25176 1.00775 0.94499 0.98086 1.69984 1.25701 1.14707 1.42440 0.86478 0.81014 0.78326 0.81652 1.20769 1.21601 1.20588 1.21062 1.00495 0.90976 0.86468 1.22625 0.94870 1.03265 0.82138 1.45977 1.56096 1.08529 1.23916 1.17316 0.80074 0.85357 0.82005 1.90794 1.53533 1.26429 1.67792 1.23221 0.94498 0.84233 0.95899 1.68384 1.11753 1.26581 1.14210 1.23343 0.89984 0.99916 0.88835 1.23164 1.02643 0.95039 1.03000 1.23397 0.90194 0.98208 0.90530 1.68293 1.10494 1.32556 1.07242 0.93211 0.93483 0.93814 0.92902 0.92322 0.93549 0.94709 0.93437 0.88264 0.95084 0.92562 0.91316 0.75608 0.80725 0.82972 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.15 -2.70 6.23 -26.73 -0.17 -2.86 16 3 C 0.15 3.08 5.72 -4.04 -0.02 3.05 16 4 N -0.58 -14.04 2.43 -173.23 -0.42 -14.46 16 5 C -0.26 -7.06 9.45 -15.06 -0.14 -7.20 16 6 H 0.06 1.65 7.92 -52.48 -0.42 1.24 16 7 C 0.02 0.41 4.95 -17.43 -0.09 0.33 16 8 N -0.89 -24.77 11.47 55.49 0.64 -24.13 16 9 Si 0.90 21.50 29.60 -169.99 -5.03 16.47 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.14 3.09 5.45 -4.04 -0.02 3.07 16 14 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 15 N -0.69 -12.72 5.54 -61.02 -0.34 -13.06 16 16 C 0.57 10.93 7.85 -12.01 -0.09 10.84 16 17 O -0.51 -11.47 16.86 5.39 0.09 -11.38 16 18 C 0.29 4.69 7.60 -157.07 -1.19 3.49 16 19 N -0.49 -6.61 9.58 -11.12 -0.11 -6.72 16 20 C 0.15 1.32 11.30 -17.22 -0.19 1.13 16 21 C -0.22 -1.58 10.18 -39.16 -0.40 -1.98 16 22 C 0.14 1.39 11.30 -17.23 -0.19 1.19 16 23 N -0.47 -7.05 10.13 -11.12 -0.11 -7.17 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.05 1.00 6.64 -51.93 -0.34 0.66 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 30 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.10 2.50 5.52 -51.93 -0.29 2.22 16 33 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 34 H 0.06 1.18 6.64 -51.93 -0.34 0.83 16 35 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.41 6.77 7.78 -40.82 -0.32 6.45 16 37 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 39 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -32.69 334.36 -7.88 -40.57 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.46 Total: 3.64 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -2.17 Total: 11.20 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.34 Total: -65.53 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.69 -7.88 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567434902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.367 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds