Wall clock time and date at job start Tue Mar 31 2020 01:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 N 1.46502 * 109.47070 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00327 * 275.31129 * 4 3 2 6 6 H 1.08008 * 119.99944 * 37.57408 * 5 4 3 7 7 C 1.38816 * 120.00246 * 217.58035 * 5 4 3 8 8 N 1.31621 * 119.99591 * 21.41584 * 7 5 4 9 9 Si 1.86796 * 120.00034 * 201.41941 * 7 5 4 10 10 H 1.48498 * 109.46993 * 59.99938 * 9 7 5 11 11 H 1.48504 * 109.46827 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47291 * 299.99576 * 9 7 5 13 13 C 1.46498 * 119.99785 * 95.30675 * 4 3 2 14 14 C 1.53005 * 109.47487 * 269.99992 * 13 4 3 15 15 N 1.46498 * 109.47487 * 180.02562 * 14 13 4 16 16 C 1.34770 * 119.99882 * 179.97438 * 15 14 13 17 17 O 1.21468 * 120.00268 * 0.02562 * 16 15 14 18 18 C 1.48539 * 120.00065 * 180.02562 * 16 15 14 19 19 N 1.32463 * 119.18160 * 359.73002 * 18 16 15 20 20 C 1.32117 * 120.76387 * 179.71893 * 19 18 16 21 21 C 1.38805 * 119.16602 * 0.54368 * 20 19 18 22 22 C 1.38799 * 118.50234 * 359.73400 * 21 20 19 23 23 N 1.32107 * 119.16726 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.47122 * 300.00339 * 1 2 3 25 25 H 1.09000 * 109.46621 * 60.00493 * 1 2 3 26 26 H 1.09007 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47167 * 239.99185 * 2 1 3 28 28 H 1.09006 * 109.46657 * 119.99965 * 2 1 3 29 29 H 1.09001 * 109.47206 * 59.99981 * 3 2 1 30 30 H 1.09000 * 109.47031 * 299.99256 * 3 2 1 31 31 H 0.96995 * 119.99599 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47315 * 150.00325 * 13 4 3 33 33 H 1.08995 * 109.47263 * 29.99844 * 13 4 3 34 34 H 1.09003 * 109.46571 * 59.99877 * 14 13 4 35 35 H 1.09007 * 109.46850 * 300.00631 * 14 13 4 36 36 H 0.96999 * 119.99603 * 0.02562 * 15 14 13 37 37 H 1.08002 * 120.41501 * 180.27987 * 20 19 18 38 38 H 1.07995 * 120.74417 * 179.75267 * 21 20 19 39 39 H 1.08001 * 120.41274 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.3329 1.1817 6 1 3.8170 0.6875 1.9636 7 6 5.3613 2.0514 1.3741 8 7 5.6020 3.1240 0.6501 9 14 6.5968 1.4961 2.6604 10 1 7.0657 0.1247 2.3367 11 1 7.7548 2.4257 2.6682 12 1 5.9524 1.4961 3.9982 13 6 4.2380 1.5597 -1.2624 14 6 4.4933 0.1641 -1.8354 15 7 5.2268 0.2812 -3.0981 16 6 5.5645 -0.8271 -3.7865 17 8 5.2604 -1.9231 -3.3602 18 6 6.3088 -0.7084 -5.0665 19 7 6.6275 0.4950 -5.5190 20 6 7.2939 0.6367 -6.6510 21 6 7.6496 -0.4944 -7.3727 22 6 7.2942 -1.7389 -6.8712 23 7 6.6329 -1.8082 -5.7297 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8901 31 1 6.4211 3.6258 0.7843 32 1 5.1904 2.0592 -1.0848 33 1 3.6492 2.1414 -1.9716 34 1 3.5409 -0.3355 -2.0129 35 1 5.0821 -0.4177 -1.1261 36 1 5.4700 1.1565 -3.4382 37 1 7.5548 1.6204 -7.0125 38 1 8.1910 -0.4080 -8.3031 39 1 7.5556 -2.6393 -7.4073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567434902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:43 Heat of formation + Delta-G solvation = 8.981122 kcal Electronic energy + Delta-G solvation = -21200.625927 eV Core-core repulsion = 17950.263876 eV Total energy + Delta-G solvation = -3250.362051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25096 -40.35744 -38.25374 -35.98126 -34.82452 -34.58037 -33.36213 -32.53678 -29.96463 -27.33973 -26.66295 -25.54367 -24.82759 -22.71972 -22.19397 -21.75438 -19.63100 -18.65959 -18.50296 -17.12490 -16.97158 -16.82294 -16.67994 -16.02433 -16.00430 -15.70003 -15.30802 -14.92564 -14.65062 -14.47872 -14.30326 -14.25309 -13.33916 -13.08793 -12.92755 -12.63850 -12.52522 -12.33905 -12.22485 -12.07479 -12.04634 -11.87254 -11.70965 -11.37548 -11.19809 -10.76196 -10.53319 -10.39726 -10.12966 -8.59854 -7.86198 -5.49235 -0.62104 0.08893 1.43631 1.47739 1.53526 1.53937 1.71705 2.48858 2.78973 2.86634 3.20183 3.29151 3.65663 3.75546 3.89777 4.10334 4.21104 4.30907 4.36038 4.38412 4.51379 4.68024 4.70231 4.77355 4.85294 4.99565 5.12452 5.22054 5.25672 5.28838 5.29002 5.44277 5.62975 5.64476 5.72288 5.90205 6.31456 6.45683 6.86137 7.03671 7.14738 7.81709 8.34362 9.09822 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.004591 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.045292 B = 6098.045419 C = 7169.034733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.273 4.273 6 H 0.053 0.947 7 C -0.026 4.026 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.147 3.853 14 C 0.118 3.882 15 N -0.687 5.687 16 C 0.570 3.430 17 O -0.558 6.558 18 C 0.260 3.740 19 N -0.508 5.508 20 C 0.134 3.866 21 C -0.176 4.176 22 C 0.129 3.871 23 N -0.509 5.509 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.417 0.583 37 H 0.217 0.783 38 H 0.207 0.793 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 -3.000 -18.470 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.404 4.404 6 H 0.071 0.929 7 C -0.224 4.224 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.214 1.214 11 H -0.214 1.214 12 H -0.198 1.198 13 C 0.019 3.981 14 C -0.008 4.008 15 N -0.339 5.339 16 C 0.353 3.647 17 O -0.435 6.435 18 C -0.010 4.010 19 N -0.226 5.226 20 C -0.032 4.032 21 C -0.197 4.197 22 C -0.036 4.036 23 N -0.225 5.225 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.255 0.745 37 H 0.233 0.767 38 H 0.224 0.776 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.954 -3.700 -17.222 17.723 hybrid contribution 1.313 0.075 0.050 1.316 sum 3.267 -3.625 -17.172 17.852 Atomic orbital electron populations 1.21652 0.94204 1.01774 1.02021 1.22029 0.96481 0.98792 1.00284 1.21060 0.83197 0.94542 0.99176 1.43821 1.00914 1.85036 1.01832 1.19142 1.06435 1.20075 0.94700 0.92930 1.25749 1.02041 0.94654 0.99987 1.70076 1.25938 1.15472 1.43779 0.85628 0.79153 0.77368 0.80053 1.21420 1.21350 1.19790 1.20900 0.99371 0.91500 0.86318 1.22122 0.94406 1.01635 0.82621 1.45785 1.55925 1.09195 1.23035 1.17846 0.79381 0.84441 0.83064 1.90741 1.55434 1.27849 1.69434 1.22302 0.97325 0.85798 0.95582 1.68298 1.12709 1.25315 1.16279 1.24180 0.88890 1.02571 0.87516 1.23736 0.99402 0.93073 1.03488 1.24153 0.89326 1.00983 0.89161 1.68166 1.12083 1.32787 1.09484 0.92498 0.92112 0.92298 0.93706 0.94202 0.94440 0.93198 0.93641 0.90782 0.93555 0.92702 0.94618 0.74535 0.76690 0.77609 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.23 16 2 C -0.14 -5.04 6.23 30.59 0.19 -4.84 16 3 C 0.15 6.10 5.72 86.38 0.49 6.59 16 4 N -0.60 -29.57 2.43 -701.99 -1.71 -31.28 16 5 C -0.27 -15.04 9.45 84.04 0.79 -14.25 16 6 H 0.05 2.93 7.92 -2.91 -0.02 2.91 16 7 C -0.03 -1.44 4.95 84.86 0.42 -1.02 16 8 N -0.91 -51.76 11.47 21.65 0.25 -51.51 16 9 Si 0.95 45.02 29.60 68.60 2.03 47.05 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.15 6.76 5.45 86.38 0.47 7.23 16 14 C 0.12 5.14 6.00 86.38 0.52 5.66 16 15 N -0.69 -26.27 5.54 -465.29 -2.58 -28.85 16 16 C 0.57 22.78 7.85 86.99 0.68 23.46 16 17 O -0.56 -26.42 16.86 -3.62 -0.06 -26.48 16 18 C 0.26 8.41 7.60 137.68 1.05 9.46 16 19 N -0.51 -13.07 9.58 -189.08 -1.81 -14.88 16 20 C 0.13 1.95 11.30 84.79 0.96 2.90 16 21 C -0.18 -1.72 10.18 22.54 0.23 -1.49 16 22 C 0.13 2.11 11.30 84.79 0.96 3.07 16 23 N -0.51 -15.02 10.13 -189.10 -1.92 -16.94 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.04 1.72 6.64 -2.39 -0.02 1.70 16 28 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 30 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 31 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.07 3.86 5.52 -2.39 -0.01 3.85 16 33 H 0.05 1.96 7.86 -2.39 -0.02 1.94 16 34 H 0.05 2.39 6.64 -2.39 -0.02 2.37 16 35 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.42 14.26 7.78 -92.71 -0.72 13.54 16 37 H 0.22 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.21 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -75.44 334.36 2.02 -73.42 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.34 Total: 15.91 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 7.48 Total: 33.55 kcal Atomic # 7 Polarization: -135.69 SS G_CDS: -7.77 Total: -143.46 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.06 Total: -26.48 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.44 2.02 -73.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567434902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.404 kcal (2) G-P(sol) polarization free energy of solvation -75.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds