Wall clock time and date at job start Tue Mar 31 2020 00:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47482 * 2 1 4 4 C 1.35364 * 126.38336 * 85.00287 * 3 2 1 5 5 C 1.41507 * 105.50178 * 180.02562 * 4 3 2 6 6 C 1.47714 * 126.51784 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99772 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99883 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99767 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46940 * 180.02562 * 9 8 6 11 11 C 1.30998 * 120.00174 * 127.15890 * 10 9 8 12 12 C 1.50693 * 120.00034 * 7.55380 * 11 10 9 13 13 N 1.46505 * 109.47369 * 127.00997 * 12 11 10 14 14 C 1.36936 * 120.00270 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99777 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00148 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00103 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00206 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46799 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46886 * 120.00034 * 18 16 14 21 21 H 1.48498 * 109.47011 * 240.00440 * 18 16 14 22 22 N 1.31807 * 106.96281 * 359.97438 * 5 4 3 23 23 N 1.28474 * 110.07386 * 359.72691 * 22 5 4 24 24 H 0.96999 * 124.88521 * 180.30595 * 23 22 5 25 25 H 1.09000 * 109.47107 * 300.00322 * 1 2 3 26 26 H 1.09002 * 109.46650 * 59.99477 * 1 2 3 27 27 H 1.08993 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47133 * 120.00304 * 2 1 3 29 29 H 1.09000 * 109.47107 * 239.99678 * 2 1 3 30 30 H 1.07999 * 127.24954 * 359.97438 * 4 3 2 31 31 H 0.96995 * 119.99950 * 359.97438 * 8 6 5 32 32 H 1.09005 * 109.47222 * 299.99846 * 9 8 6 33 33 H 1.09001 * 109.47563 * 59.99772 * 9 8 6 34 34 H 1.08000 * 119.99638 * 307.14646 * 10 9 8 35 35 H 1.08003 * 119.99780 * 187.55824 * 11 10 9 36 36 H 1.09010 * 109.47108 * 247.01013 * 12 11 10 37 37 H 1.08999 * 109.47444 * 7.00544 * 12 11 10 38 38 H 0.97000 * 119.99710 * 0.02562 * 13 12 11 39 39 H 0.96996 * 120.00547 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2106 2.2094 1.0856 5 6 2.6923 3.4415 0.5831 6 6 3.0411 4.6381 1.3759 7 8 2.9223 4.6215 2.5857 8 7 3.4909 5.7481 0.7580 9 6 3.8374 6.9347 1.5443 10 6 4.3092 8.0286 0.6214 11 6 3.7610 9.2169 0.6802 12 6 2.7820 9.5416 1.7788 13 7 3.2048 10.7657 2.4638 14 6 2.4639 11.2587 3.5045 15 1 1.5680 10.7449 3.8207 16 6 2.8647 12.4182 4.1539 17 7 3.9567 13.0441 3.7689 18 14 1.8544 13.0904 5.5741 19 1 0.6829 12.2085 5.8091 20 1 2.6923 13.1366 6.7992 21 1 1.3852 14.4599 5.2431 22 7 2.7705 3.3183 -0.7269 23 7 2.3945 2.1424 -1.0824 24 1 2.3715 1.8201 -1.9970 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.0237 1.9527 2.1179 31 1 3.5860 5.7612 -0.2072 32 1 2.9595 7.2761 2.0929 33 1 4.6313 6.6850 2.2482 34 1 5.0994 7.8329 -0.0883 35 1 4.0108 9.9640 -0.0587 36 1 1.7906 9.6890 1.3502 37 1 2.7504 8.7183 2.4924 38 1 4.0091 11.2273 2.1796 39 1 4.2371 13.8541 4.2229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568818842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:08 Heat of formation + Delta-G solvation = 63.111435 kcal Electronic energy + Delta-G solvation = -20069.935781 eV Core-core repulsion = 16821.920997 eV Total energy + Delta-G solvation = -3248.014784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.97039 -39.32456 -36.49274 -34.79010 -34.40991 -32.84007 -32.04611 -30.40025 -29.66868 -26.85632 -25.07277 -24.22395 -23.35255 -22.43809 -21.37540 -20.13501 -18.60752 -17.99212 -17.16810 -16.54532 -16.16115 -16.06005 -15.21651 -14.91467 -14.55962 -14.32502 -14.24185 -13.80347 -13.51735 -13.36641 -13.15460 -12.93249 -12.58397 -12.35354 -12.09136 -11.69464 -11.68391 -11.09757 -10.92571 -10.77708 -10.38105 -10.18115 -9.96728 -9.74349 -9.66595 -9.27860 -9.10259 -8.97564 -8.54273 -6.87796 -5.73235 -3.02175 1.37658 1.83305 2.29763 2.54490 3.38996 3.39406 3.47470 3.53216 3.55710 4.16132 4.23925 4.46831 4.65167 4.74511 4.96436 5.04446 5.11804 5.25686 5.36035 5.38221 5.39720 5.60221 5.64821 5.70741 5.75255 5.94285 6.01109 6.11204 6.30286 6.39836 6.59435 6.62886 6.65944 6.93558 7.20082 7.42415 7.69930 7.74844 8.24652 8.45331 9.56722 10.12930 10.48422 11.49697 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031458 B = 0.002554 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.854004 B =10960.866178 C =11509.432981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C 0.014 3.986 4 C -0.175 4.175 5 C -0.005 4.005 6 C 0.598 3.402 7 O -0.530 6.530 8 N -0.710 5.710 9 C 0.140 3.860 10 C -0.198 4.198 11 C -0.109 4.109 12 C 0.161 3.839 13 N -0.728 5.728 14 C -0.238 4.238 15 H 0.072 0.928 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.292 1.292 22 N -0.260 5.260 23 N -0.381 5.381 24 H 0.443 0.557 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.405 0.595 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 -27.789 -13.574 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.203 4.203 5 C -0.166 4.166 6 C 0.382 3.618 7 O -0.404 6.404 8 N -0.361 5.361 9 C 0.018 3.982 10 C -0.217 4.217 11 C -0.129 4.129 12 C 0.034 3.966 13 N -0.372 5.372 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 N -0.096 5.096 23 N -0.095 5.095 24 H 0.288 0.712 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.180 0.820 31 H 0.239 0.761 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.218 0.782 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.972 -27.136 -13.449 30.432 hybrid contribution -0.290 0.092 0.281 0.414 sum -3.261 -27.044 -13.168 30.256 Atomic orbital electron populations 1.21792 0.93914 1.02325 1.02801 1.20123 0.96530 0.88603 1.04014 1.21453 1.05401 0.96976 0.87331 1.21535 1.06542 0.92288 0.99899 1.22001 1.07891 0.96937 0.89790 1.16888 0.77399 0.81172 0.86384 1.90829 1.53671 1.82813 1.13124 1.45879 1.66038 1.12803 1.11334 1.20618 1.01694 0.82754 0.93115 1.22583 1.01541 0.95240 1.02374 1.23282 0.95891 0.96412 0.97296 1.20020 0.94493 0.90830 0.91231 1.42285 1.30692 1.25934 1.38307 1.19302 1.04936 1.05448 1.07266 0.90984 1.24761 0.98005 0.98223 1.00103 1.69675 1.24690 1.20202 1.43650 0.86085 0.79254 0.78591 0.82108 1.20464 1.21809 1.21871 1.73545 1.18444 1.02447 1.15131 1.43293 1.47751 1.08571 1.09898 0.71236 0.91722 0.92680 0.91685 0.88947 0.90660 0.81967 0.76056 0.89097 0.90799 0.87014 0.86878 0.95399 0.94556 0.78168 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.90 37.16 0.37 -0.25 16 2 C -0.05 -0.22 6.49 -27.88 -0.18 -0.40 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.17 -1.85 10.73 -39.36 -0.42 -2.28 16 5 C -0.01 -0.06 7.13 -82.76 -0.59 -0.65 16 6 C 0.60 9.05 7.82 -12.39 -0.10 8.96 16 7 O -0.53 -9.83 16.93 5.30 0.09 -9.74 16 8 N -0.71 -9.63 5.55 -62.47 -0.35 -9.98 16 9 C 0.14 2.14 5.76 -5.20 -0.03 2.11 16 10 C -0.20 -2.86 9.63 -36.03 -0.35 -3.21 16 11 C -0.11 -1.84 9.63 -36.03 -0.35 -2.19 16 12 C 0.16 3.38 6.35 -5.19 -0.03 3.35 16 13 N -0.73 -19.17 5.59 -61.08 -0.34 -19.51 16 14 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 15 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 18 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 N -0.26 -2.76 11.92 33.42 0.40 -2.36 16 23 N -0.38 -2.77 6.83 33.50 0.23 -2.55 16 24 H 0.44 1.55 8.96 -190.44 -1.71 -0.15 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.40 4.65 8.19 -40.82 -0.33 4.31 16 32 H 0.09 1.58 5.30 -51.93 -0.28 1.30 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 36 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 37 H 0.04 0.78 5.29 -51.93 -0.27 0.50 16 38 H 0.38 10.56 7.66 -40.82 -0.31 10.25 16 39 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -35.27 338.86 -8.30 -43.57 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.68 Total: 8.22 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.46 Total: -2.59 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.66 Total: -62.55 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.27 -8.30 -43.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568818842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.684 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds