Wall clock time and date at job start Tue Mar 31 2020 00:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47482 * 2 1 4 4 C 1.35364 * 126.38336 * 85.00287 * 3 2 1 5 5 C 1.41507 * 105.50178 * 180.02562 * 4 3 2 6 6 C 1.47714 * 126.51784 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99772 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99883 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99767 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46940 * 180.02562 * 9 8 6 11 11 C 1.30998 * 120.00174 * 127.15890 * 10 9 8 12 12 C 1.50693 * 120.00034 * 7.55380 * 11 10 9 13 13 N 1.46505 * 109.47369 * 127.00997 * 12 11 10 14 14 C 1.36936 * 120.00270 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99777 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00148 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00103 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00206 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46799 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46886 * 120.00034 * 18 16 14 21 21 H 1.48498 * 109.47011 * 240.00440 * 18 16 14 22 22 N 1.31807 * 106.96281 * 359.97438 * 5 4 3 23 23 N 1.28474 * 110.07386 * 359.72691 * 22 5 4 24 24 H 0.96999 * 124.88521 * 180.30595 * 23 22 5 25 25 H 1.09000 * 109.47107 * 300.00322 * 1 2 3 26 26 H 1.09002 * 109.46650 * 59.99477 * 1 2 3 27 27 H 1.08993 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47133 * 120.00304 * 2 1 3 29 29 H 1.09000 * 109.47107 * 239.99678 * 2 1 3 30 30 H 1.07999 * 127.24954 * 359.97438 * 4 3 2 31 31 H 0.96995 * 119.99950 * 359.97438 * 8 6 5 32 32 H 1.09005 * 109.47222 * 299.99846 * 9 8 6 33 33 H 1.09001 * 109.47563 * 59.99772 * 9 8 6 34 34 H 1.08000 * 119.99638 * 307.14646 * 10 9 8 35 35 H 1.08003 * 119.99780 * 187.55824 * 11 10 9 36 36 H 1.09010 * 109.47108 * 247.01013 * 12 11 10 37 37 H 1.08999 * 109.47444 * 7.00544 * 12 11 10 38 38 H 0.97000 * 119.99710 * 0.02562 * 13 12 11 39 39 H 0.96996 * 120.00547 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2106 2.2094 1.0856 5 6 2.6923 3.4415 0.5831 6 6 3.0411 4.6381 1.3759 7 8 2.9223 4.6215 2.5857 8 7 3.4909 5.7481 0.7580 9 6 3.8374 6.9347 1.5443 10 6 4.3092 8.0286 0.6214 11 6 3.7610 9.2169 0.6802 12 6 2.7820 9.5416 1.7788 13 7 3.2048 10.7657 2.4638 14 6 2.4639 11.2587 3.5045 15 1 1.5680 10.7449 3.8207 16 6 2.8647 12.4182 4.1539 17 7 3.9567 13.0441 3.7689 18 14 1.8544 13.0904 5.5741 19 1 0.6829 12.2085 5.8091 20 1 2.6923 13.1366 6.7992 21 1 1.3852 14.4599 5.2431 22 7 2.7705 3.3183 -0.7269 23 7 2.3945 2.1424 -1.0824 24 1 2.3715 1.8201 -1.9970 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.0237 1.9527 2.1179 31 1 3.5860 5.7612 -0.2072 32 1 2.9595 7.2761 2.0929 33 1 4.6313 6.6850 2.2482 34 1 5.0994 7.8329 -0.0883 35 1 4.0108 9.9640 -0.0587 36 1 1.7906 9.6890 1.3502 37 1 2.7504 8.7183 2.4924 38 1 4.0091 11.2273 2.1796 39 1 4.2371 13.8541 4.2229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568818842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:07 Heat of formation + Delta-G solvation = 36.510533 kcal Electronic energy + Delta-G solvation = -20071.089283 eV Core-core repulsion = 16821.920997 eV Total energy + Delta-G solvation = -3249.168286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.72218 -40.53624 -37.98074 -36.13345 -35.23603 -34.41395 -32.97972 -32.25184 -30.32382 -28.30694 -26.74790 -24.75069 -24.45620 -24.27507 -22.06362 -21.26955 -20.04023 -18.96574 -18.67183 -17.78171 -17.47242 -16.95264 -16.60128 -16.25622 -15.63145 -15.41661 -15.25484 -15.06335 -14.99093 -14.64077 -14.21449 -14.18450 -13.90850 -13.35486 -13.23721 -12.94468 -12.74151 -12.50835 -12.14195 -12.10362 -11.91782 -11.75218 -11.67380 -11.41147 -11.03181 -10.55432 -10.32590 -9.98140 -9.93067 -8.99861 -7.97875 -5.27474 0.46113 1.02244 1.08773 1.46568 1.47865 1.58342 1.89098 2.30714 2.34013 2.56070 3.34980 3.35918 3.67992 3.77833 4.00523 4.11542 4.16881 4.33054 4.33952 4.42543 4.52055 4.59046 4.70252 4.81295 4.85000 4.90877 5.05854 5.08773 5.20284 5.27332 5.32024 5.40977 5.45925 5.57102 5.84254 6.07838 6.24926 6.43326 6.84417 7.11731 7.30817 8.04086 8.29480 9.25758 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031458 B = 0.002554 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.854004 B =10960.866178 C =11509.432981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C 0.038 3.962 4 C -0.202 4.202 5 C -0.034 4.034 6 C 0.595 3.405 7 O -0.575 6.575 8 N -0.697 5.697 9 C 0.140 3.860 10 C -0.160 4.160 11 C -0.132 4.132 12 C 0.160 3.840 13 N -0.741 5.741 14 C -0.249 4.249 15 H 0.074 0.926 16 C -0.075 4.075 17 N -0.968 5.968 18 Si 0.976 3.024 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.289 1.289 22 N -0.264 5.264 23 N -0.361 5.361 24 H 0.462 0.538 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.159 0.841 31 H 0.417 0.583 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.025 0.975 37 H 0.034 0.966 38 H 0.376 0.624 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 -29.977 -15.217 33.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.089 4.089 4 C -0.230 4.230 5 C -0.194 4.194 6 C 0.380 3.620 7 O -0.452 6.452 8 N -0.349 5.349 9 C 0.018 3.982 10 C -0.179 4.179 11 C -0.151 4.151 12 C 0.034 3.966 13 N -0.384 5.384 14 C -0.381 4.381 15 H 0.091 0.909 16 C -0.268 4.268 17 N -0.618 5.618 18 Si 0.805 3.195 19 H -0.192 1.192 20 H -0.218 1.218 21 H -0.216 1.216 22 N -0.101 5.101 23 N -0.078 5.078 24 H 0.311 0.689 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.176 0.824 31 H 0.254 0.746 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.144 0.856 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.208 0.792 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.303 -29.359 -15.161 33.207 hybrid contribution -0.216 0.585 0.696 0.935 sum -3.519 -28.773 -14.464 32.396 Atomic orbital electron populations 1.21791 0.93795 1.03222 1.01999 1.20295 0.96416 0.86335 1.05913 1.21853 1.03013 0.97893 0.86134 1.21693 1.07987 0.92440 1.00909 1.21695 1.10344 0.96701 0.90626 1.17284 0.76551 0.81997 0.86119 1.90792 1.55641 1.83716 1.15096 1.45707 1.65459 1.11916 1.11769 1.20463 1.00525 0.83730 0.93527 1.22766 1.00402 0.93573 1.01189 1.23044 0.96758 0.97966 0.97338 1.20093 0.95615 0.88651 0.92220 1.42482 1.30196 1.27473 1.38238 1.19671 1.05084 1.05540 1.07767 0.90854 1.25616 0.99388 0.98788 1.02986 1.69820 1.26336 1.20625 1.45057 0.85033 0.77987 0.77859 0.78641 1.19228 1.21796 1.21571 1.73460 1.18727 1.03903 1.14027 1.43403 1.45876 1.07532 1.11000 0.68930 0.93331 0.92722 0.89972 0.88081 0.87751 0.82370 0.74561 0.91512 0.91348 0.83307 0.85569 0.95722 0.94877 0.79190 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.90 71.98 0.71 -0.15 16 2 C -0.05 -0.26 6.49 29.85 0.19 -0.06 16 3 C 0.04 0.48 6.48 41.40 0.27 0.75 16 4 C -0.20 -4.22 10.73 22.41 0.24 -3.98 16 5 C -0.03 -0.86 7.13 42.46 0.30 -0.55 16 6 C 0.59 18.38 7.82 86.75 0.68 19.06 16 7 O -0.57 -22.28 16.93 -3.96 -0.07 -22.35 16 8 N -0.70 -18.66 5.55 -469.83 -2.61 -21.27 16 9 C 0.14 4.27 5.76 85.63 0.49 4.76 16 10 C -0.16 -4.35 9.63 25.65 0.25 -4.11 16 11 C -0.13 -4.34 9.63 25.65 0.25 -4.09 16 12 C 0.16 6.82 6.35 85.63 0.54 7.36 16 13 N -0.74 -39.75 5.59 -347.17 -1.94 -41.69 16 14 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 15 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 17 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 18 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 N -0.26 -5.20 11.92 -48.17 -0.57 -5.77 16 23 N -0.36 -4.35 6.83 -47.93 -0.33 -4.67 16 24 H 0.46 1.68 8.96 -219.99 -1.97 -0.29 16 25 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 26 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.42 8.99 8.19 -92.71 -0.76 8.23 16 32 H 0.07 2.39 5.30 -2.38 -0.01 2.38 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.03 1.46 5.29 -2.39 -0.01 1.45 16 38 H 0.38 21.09 7.66 -92.71 -0.71 20.38 16 39 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -77.88 338.86 -0.32 -78.20 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -2.35 Total: 27.10 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.23 Total: 1.18 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -5.17 Total: -133.89 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.07 Total: -22.35 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -77.88 -0.32 -78.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568818842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.714 kcal (2) G-P(sol) polarization free energy of solvation -77.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds