Wall clock time and date at job start Tue Mar 31 2020 00:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46963 * 2 1 4 4 C 1.35366 * 126.38749 * 275.30113 * 3 2 1 5 5 C 1.41502 * 105.50039 * 180.14257 * 4 3 2 6 6 C 1.47713 * 126.51931 * 179.84036 * 5 4 3 7 7 O 1.21575 * 119.99775 * 359.71634 * 6 5 4 8 8 N 1.34774 * 120.00568 * 179.71375 * 6 5 4 9 9 C 1.46502 * 120.00215 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46804 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27541 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46500 * 109.46883 * 124.99760 * 12 11 10 14 14 C 1.36943 * 119.99537 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99930 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00004 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47163 * 119.99818 * 18 16 14 21 21 H 1.48504 * 109.47118 * 239.99827 * 18 16 14 22 22 N 1.31810 * 106.96389 * 359.58244 * 5 4 3 23 23 N 1.28462 * 110.07424 * 0.26159 * 22 5 4 24 24 H 0.97000 * 124.88477 * 180.02562 * 23 22 5 25 25 H 1.09003 * 109.46929 * 300.00217 * 1 2 3 26 26 H 1.09009 * 109.47038 * 59.99714 * 1 2 3 27 27 H 1.08998 * 109.47434 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46684 * 240.00276 * 2 1 3 29 29 H 1.08999 * 109.46972 * 120.00123 * 2 1 3 30 30 H 1.07993 * 127.25064 * 359.97438 * 4 3 2 31 31 H 0.96997 * 119.99865 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47066 * 59.99906 * 9 8 6 33 33 H 1.09001 * 109.47002 * 300.00046 * 9 8 6 34 34 H 1.08002 * 119.99761 * 304.99301 * 10 9 8 35 35 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 36 36 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 37 37 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 38 38 H 0.96999 * 120.00357 * 0.02562 * 13 12 11 39 39 H 0.96995 * 120.00545 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2051 2.2115 -1.0851 5 6 2.6928 3.4412 -0.5830 6 6 3.0427 4.6375 -1.3758 7 8 2.9246 4.6209 -2.5857 8 7 3.4928 5.7475 -0.7579 9 6 3.8392 6.9342 -1.5442 10 6 4.3124 8.0276 -0.6213 11 6 5.4794 8.5897 -0.8164 12 6 5.9501 9.6875 0.1026 13 7 7.2583 9.3320 0.6579 14 6 7.8878 10.1837 1.5260 15 1 7.4197 11.1172 1.8015 16 6 9.1276 9.8473 2.0519 17 7 9.6979 8.7094 1.7165 18 14 9.9861 11.0087 3.2366 19 1 9.1415 12.2112 3.4503 20 1 10.2048 10.3199 4.5339 21 1 11.2949 11.4185 2.6669 22 7 2.7704 3.3182 0.7270 23 7 2.3883 2.1446 1.0830 24 1 2.3593 1.8244 1.9982 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.0138 1.9564 -2.1169 31 1 3.5873 5.7608 0.2073 32 1 2.9612 7.2757 -2.0925 33 1 4.6329 6.6845 -2.2482 34 1 3.6875 8.3507 0.1981 35 1 6.1043 8.2666 -1.6359 36 1 6.0338 10.6191 -0.4571 37 1 5.2332 9.8144 0.9139 38 1 7.6785 8.4935 0.4108 39 1 10.5644 8.4744 2.0836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568818843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:15 Heat of formation + Delta-G solvation = 54.066292 kcal Electronic energy + Delta-G solvation = -19881.352165 eV Core-core repulsion = 16632.945154 eV Total energy + Delta-G solvation = -3248.407011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.94077 -39.34440 -36.22237 -34.79789 -34.58955 -32.84414 -32.05288 -30.55384 -29.64317 -27.31108 -24.73704 -24.19795 -23.25600 -21.77678 -21.34573 -20.31507 -19.24427 -17.97414 -17.13594 -17.00413 -16.08797 -15.82589 -15.04458 -14.86433 -14.74202 -14.38631 -14.01715 -13.72720 -13.67078 -13.41470 -13.21346 -12.90381 -12.72579 -12.09076 -11.97669 -11.80682 -11.66884 -11.05584 -11.01333 -10.83060 -10.60071 -10.24672 -10.02843 -9.79401 -9.65071 -9.25048 -9.20132 -8.95329 -8.67903 -6.93064 -5.76682 -3.06162 1.40274 1.84461 2.30430 2.58774 3.36682 3.38589 3.43525 3.48932 3.51396 4.18393 4.26306 4.48878 4.60471 4.76174 4.95661 5.03182 5.10486 5.25826 5.32214 5.37903 5.40517 5.56502 5.65227 5.67421 5.71156 5.84507 6.03728 6.12689 6.16331 6.38789 6.50924 6.60032 6.68928 6.94677 7.18695 7.42475 7.69816 7.70476 8.19434 8.41655 9.52892 10.09746 10.45000 11.46137 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.002569 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.971096 B =10897.401778 C =11726.889855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C 0.014 3.986 4 C -0.175 4.175 5 C -0.009 4.009 6 C 0.602 3.398 7 O -0.537 6.537 8 N -0.710 5.710 9 C 0.155 3.845 10 C -0.200 4.200 11 C -0.107 4.107 12 C 0.172 3.828 13 N -0.730 5.730 14 C -0.241 4.241 15 H 0.072 0.928 16 C -0.015 4.015 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 N -0.255 5.255 23 N -0.379 5.379 24 H 0.444 0.556 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.410 0.590 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.031 0.969 37 H 0.026 0.974 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.720 -17.736 -3.186 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.203 4.203 5 C -0.170 4.170 6 C 0.386 3.614 7 O -0.413 6.413 8 N -0.361 5.361 9 C 0.033 3.967 10 C -0.220 4.220 11 C -0.126 4.126 12 C 0.045 3.955 13 N -0.374 5.374 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 N -0.091 5.091 23 N -0.093 5.093 24 H 0.289 0.711 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.180 0.820 31 H 0.245 0.755 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.219 0.781 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.459 -16.945 -3.054 25.983 hybrid contribution 0.566 -0.250 0.922 1.110 sum -18.893 -17.195 -2.132 25.635 Atomic orbital electron populations 1.21792 0.93975 1.02303 1.02699 1.20126 0.96451 0.88639 1.04105 1.21460 1.05475 0.96891 0.87349 1.21496 1.06743 0.92258 0.99828 1.21949 1.08146 0.97005 0.89904 1.16889 0.77061 0.81187 0.86302 1.90789 1.54356 1.82967 1.13157 1.45917 1.65696 1.12697 1.11770 1.20371 1.00422 0.82944 0.93005 1.22686 0.98626 0.99119 1.01548 1.23328 0.94678 0.96522 0.98102 1.19828 0.88925 0.93606 0.93094 1.42313 1.17271 1.23692 1.54141 1.19298 0.99756 0.99870 1.18237 0.91003 1.24775 0.97768 0.97554 1.00995 1.69680 1.17528 1.22850 1.48036 0.86087 0.79452 0.79905 0.80566 1.20509 1.21842 1.21823 1.73592 1.17739 1.02635 1.15097 1.43320 1.47473 1.08601 1.09925 0.71109 0.92677 0.91828 0.91692 0.88943 0.90564 0.82039 0.75494 0.90833 0.90957 0.86710 0.87213 0.95121 0.95657 0.78122 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.89 37.16 0.37 -0.25 16 2 C -0.05 -0.24 6.49 -27.88 -0.18 -0.42 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 4 C -0.18 -1.89 10.73 -39.36 -0.42 -2.31 16 5 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 6 C 0.60 8.96 7.83 -12.39 -0.10 8.86 16 7 O -0.54 -9.35 16.93 5.30 0.09 -9.26 16 8 N -0.71 -9.74 5.55 -62.47 -0.35 -10.08 16 9 C 0.16 2.11 6.11 -5.19 -0.03 2.08 16 10 C -0.20 -2.88 9.24 -36.02 -0.33 -3.22 16 11 C -0.11 -1.80 9.24 -36.02 -0.33 -2.13 16 12 C 0.17 3.53 6.70 -5.19 -0.03 3.50 16 13 N -0.73 -18.98 5.59 -61.08 -0.34 -19.32 16 14 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 15 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 16 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 18 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 N -0.25 -2.99 11.92 33.42 0.40 -2.59 16 23 N -0.38 -3.13 6.83 33.50 0.23 -2.90 16 24 H 0.44 2.09 8.96 -190.44 -1.71 0.38 16 25 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.41 5.29 8.19 -40.82 -0.33 4.96 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.03 7.79 -51.93 -0.40 0.63 16 34 H 0.12 1.57 7.84 -52.49 -0.41 1.16 16 35 H 0.11 1.80 7.84 -52.49 -0.41 1.39 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.52 7.79 -51.93 -0.40 0.11 16 38 H 0.39 10.56 7.66 -40.82 -0.31 10.24 16 39 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -34.75 343.35 -8.44 -43.20 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.91 Total: 8.70 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.43 Total: -2.56 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 0.66 Total: -62.85 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.75 -8.44 -43.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568818843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.266 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds