Wall clock time and date at job start Tue Mar 31 2020 00:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46963 * 2 1 4 4 C 1.35366 * 126.38749 * 275.30113 * 3 2 1 5 5 C 1.41502 * 105.50039 * 180.14257 * 4 3 2 6 6 C 1.47713 * 126.51931 * 179.84036 * 5 4 3 7 7 O 1.21575 * 119.99775 * 359.71634 * 6 5 4 8 8 N 1.34774 * 120.00568 * 179.71375 * 6 5 4 9 9 C 1.46502 * 120.00215 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46804 * 180.02562 * 9 8 6 11 11 C 1.30994 * 119.99826 * 125.27541 * 10 9 8 12 12 C 1.50702 * 120.00204 * 179.71900 * 11 10 9 13 13 N 1.46500 * 109.46883 * 124.99760 * 12 11 10 14 14 C 1.36943 * 119.99537 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99930 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00004 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47163 * 119.99818 * 18 16 14 21 21 H 1.48504 * 109.47118 * 239.99827 * 18 16 14 22 22 N 1.31810 * 106.96389 * 359.58244 * 5 4 3 23 23 N 1.28462 * 110.07424 * 0.26159 * 22 5 4 24 24 H 0.97000 * 124.88477 * 180.02562 * 23 22 5 25 25 H 1.09003 * 109.46929 * 300.00217 * 1 2 3 26 26 H 1.09009 * 109.47038 * 59.99714 * 1 2 3 27 27 H 1.08998 * 109.47434 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46684 * 240.00276 * 2 1 3 29 29 H 1.08999 * 109.46972 * 120.00123 * 2 1 3 30 30 H 1.07993 * 127.25064 * 359.97438 * 4 3 2 31 31 H 0.96997 * 119.99865 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47066 * 59.99906 * 9 8 6 33 33 H 1.09001 * 109.47002 * 300.00046 * 9 8 6 34 34 H 1.08002 * 119.99761 * 304.99301 * 10 9 8 35 35 H 1.08002 * 120.00350 * 359.72370 * 11 10 9 36 36 H 1.08998 * 109.47600 * 245.00508 * 12 11 10 37 37 H 1.09004 * 109.46937 * 5.00335 * 12 11 10 38 38 H 0.96999 * 120.00357 * 0.02562 * 13 12 11 39 39 H 0.96995 * 120.00545 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2051 2.2115 -1.0851 5 6 2.6928 3.4412 -0.5830 6 6 3.0427 4.6375 -1.3758 7 8 2.9246 4.6209 -2.5857 8 7 3.4928 5.7475 -0.7579 9 6 3.8392 6.9342 -1.5442 10 6 4.3124 8.0276 -0.6213 11 6 5.4794 8.5897 -0.8164 12 6 5.9501 9.6875 0.1026 13 7 7.2583 9.3320 0.6579 14 6 7.8878 10.1837 1.5260 15 1 7.4197 11.1172 1.8015 16 6 9.1276 9.8473 2.0519 17 7 9.6979 8.7094 1.7165 18 14 9.9861 11.0087 3.2366 19 1 9.1415 12.2112 3.4503 20 1 10.2048 10.3199 4.5339 21 1 11.2949 11.4185 2.6669 22 7 2.7704 3.3182 0.7270 23 7 2.3883 2.1446 1.0830 24 1 2.3593 1.8244 1.9982 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.0138 1.9564 -2.1169 31 1 3.5873 5.7608 0.2073 32 1 2.9612 7.2757 -2.0925 33 1 4.6329 6.6845 -2.2482 34 1 3.6875 8.3507 0.1981 35 1 6.1043 8.2666 -1.6359 36 1 6.0338 10.6191 -0.4571 37 1 5.2332 9.8144 0.9139 38 1 7.6785 8.4935 0.4108 39 1 10.5644 8.4744 2.0836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568818843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:14 Heat of formation + Delta-G solvation = 28.490133 kcal Electronic energy + Delta-G solvation = -19882.461231 eV Core-core repulsion = 16632.945154 eV Total energy + Delta-G solvation = -3249.516077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.72604 -40.50361 -37.68421 -36.25511 -35.23802 -34.41473 -33.03243 -32.29670 -30.33330 -28.78981 -26.31519 -24.81847 -24.52950 -23.32922 -22.06760 -21.45982 -20.52790 -19.12119 -18.67157 -18.06275 -17.05971 -16.92070 -16.68311 -16.10066 -15.70076 -15.29662 -15.26854 -15.10825 -14.93013 -14.67915 -14.24780 -14.20387 -13.51374 -13.34951 -13.30149 -12.90255 -12.76549 -12.50713 -12.16053 -12.09597 -11.99988 -11.79543 -11.74511 -11.42931 -11.04922 -10.56375 -10.35022 -9.98968 -9.97144 -9.02443 -7.96969 -5.27151 0.46096 1.03336 1.09057 1.47420 1.48598 1.58985 1.89569 2.30451 2.35534 2.56294 3.36259 3.37032 3.67297 3.71516 3.99409 4.08702 4.22494 4.31310 4.42433 4.46929 4.51774 4.64700 4.69247 4.73992 4.81342 4.91953 4.99778 5.08812 5.19344 5.25669 5.31099 5.40775 5.46923 5.64568 5.82469 6.07243 6.25196 6.39580 6.83051 7.08143 7.30894 8.05067 8.29037 9.26866 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.002569 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.971096 B =10897.401778 C =11726.889855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.036 3.964 4 C -0.199 4.199 5 C -0.037 4.037 6 C 0.599 3.401 7 O -0.570 6.570 8 N -0.706 5.706 9 C 0.157 3.843 10 C -0.163 4.163 11 C -0.130 4.130 12 C 0.173 3.827 13 N -0.745 5.745 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.978 3.022 19 H -0.264 1.264 20 H -0.292 1.292 21 H -0.293 1.293 22 N -0.271 5.271 23 N -0.364 5.364 24 H 0.461 0.539 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.164 0.836 31 H 0.414 0.586 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.374 0.626 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.046 -18.566 -2.078 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.091 4.091 4 C -0.227 4.227 5 C -0.197 4.197 6 C 0.385 3.615 7 O -0.448 6.448 8 N -0.356 5.356 9 C 0.034 3.966 10 C -0.182 4.182 11 C -0.149 4.149 12 C 0.047 3.953 13 N -0.388 5.388 14 C -0.379 4.379 15 H 0.097 0.903 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.807 3.193 19 H -0.188 1.188 20 H -0.219 1.219 21 H -0.220 1.220 22 N -0.108 5.108 23 N -0.081 5.081 24 H 0.309 0.691 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.181 0.819 31 H 0.250 0.750 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.205 0.795 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.825 -17.746 -1.924 27.428 hybrid contribution 0.841 -0.072 0.578 1.023 sum -19.985 -17.818 -1.346 26.808 Atomic orbital electron populations 1.21784 0.93521 1.03252 1.02081 1.20304 0.96642 0.86290 1.05822 1.21917 1.03104 0.97861 0.86172 1.21690 1.07896 0.92174 1.00927 1.21808 1.10151 0.97146 0.90567 1.17179 0.76442 0.81789 0.86113 1.90757 1.55909 1.83637 1.14516 1.45866 1.65309 1.12511 1.11948 1.20344 1.00737 0.82766 0.92762 1.22753 0.97332 0.97422 1.00718 1.23021 0.96000 0.97255 0.98629 1.19919 0.86701 0.94966 0.93671 1.42553 1.19117 1.22975 1.54117 1.19729 0.99973 1.00258 1.17933 0.90272 1.25658 0.98796 0.99343 1.03286 1.69840 1.17815 1.24822 1.49671 0.85005 0.78082 0.78283 0.77961 1.18816 1.21894 1.21984 1.73511 1.18542 1.04253 1.14523 1.43428 1.45932 1.07675 1.11016 0.69128 0.92807 0.92984 0.89979 0.87963 0.88129 0.81870 0.74976 0.89567 0.91626 0.85341 0.87214 0.94926 0.94949 0.79455 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 71.98 0.71 -0.15 16 2 C -0.05 -0.32 6.49 29.85 0.19 -0.12 16 3 C 0.04 0.51 6.48 41.40 0.27 0.78 16 4 C -0.20 -4.19 10.73 22.41 0.24 -3.95 16 5 C -0.04 -0.97 7.13 42.46 0.30 -0.67 16 6 C 0.60 18.02 7.83 86.75 0.68 18.70 16 7 O -0.57 -20.24 16.93 -3.95 -0.07 -20.30 16 8 N -0.71 -19.10 5.55 -469.83 -2.61 -21.71 16 9 C 0.16 4.14 6.11 85.63 0.52 4.67 16 10 C -0.16 -4.48 9.24 25.65 0.24 -4.24 16 11 C -0.13 -4.29 9.24 25.65 0.24 -4.06 16 12 C 0.17 7.01 6.70 85.63 0.57 7.59 16 13 N -0.74 -38.98 5.59 -347.16 -1.94 -40.92 16 14 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 15 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 16 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 17 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 18 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 N -0.27 -6.14 11.92 -48.17 -0.57 -6.71 16 23 N -0.36 -5.36 6.83 -47.93 -0.33 -5.69 16 24 H 0.46 3.23 8.96 -220.00 -1.97 1.26 16 25 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.41 10.44 8.19 -92.71 -0.76 9.68 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 1.86 7.79 -2.39 -0.02 1.84 16 34 H 0.13 3.22 7.84 -2.91 -0.02 3.20 16 35 H 0.11 3.63 7.84 -2.91 -0.02 3.61 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.03 1.28 7.79 -2.38 -0.02 1.26 16 38 H 0.37 20.90 7.66 -92.71 -0.71 20.19 16 39 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -74.99 343.35 -0.29 -75.28 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -2.36 Total: 30.58 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.27 Total: 1.18 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -5.17 Total: -135.30 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.07 Total: -20.30 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -74.99 -0.29 -75.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568818843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.771 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds