Wall clock time and date at job start Tue Mar 31 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47283 * 2 1 4 4 C 1.50696 * 109.47014 * 239.99660 * 2 1 3 5 5 H 1.08003 * 120.00332 * 239.99876 * 4 2 1 6 6 C 1.37880 * 120.00169 * 60.00460 * 4 2 1 7 7 N 1.31517 * 119.99824 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00297 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47051 * 60.00025 * 8 6 4 10 10 H 1.48502 * 109.47349 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47094 * 300.00142 * 8 6 4 12 12 C 1.52997 * 109.46687 * 120.00075 * 2 1 3 13 13 N 1.46501 * 109.47469 * 299.99749 * 12 2 1 14 14 C 1.34773 * 120.00439 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99780 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00323 * 180.02562 * 14 13 12 17 17 H 1.09012 * 110.22980 * 39.60765 * 16 14 13 18 18 N 1.48020 * 110.20136 * 161.45422 * 16 14 13 19 19 C 1.48026 * 104.14688 * 91.16558 * 18 16 14 20 20 C 1.51179 * 105.74702 * 27.91460 * 19 18 16 21 21 N 1.30725 * 143.91934 * 162.39270 * 20 19 18 22 22 N 1.40093 * 108.25981 * 179.97438 * 21 20 19 23 23 H 0.97000 * 126.03577 * 180.02562 * 22 21 20 24 24 C 1.34971 * 107.92733 * 0.02562 * 22 21 20 25 25 C 1.35141 * 107.77851 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.47008 * 300.00421 * 1 2 3 27 27 H 1.08997 * 109.46640 * 60.00313 * 1 2 3 28 28 H 1.09005 * 109.46847 * 179.97438 * 1 2 3 29 29 H 1.08988 * 109.47163 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46962 * 300.00177 * 3 2 1 31 31 H 1.09000 * 109.46749 * 59.99584 * 3 2 1 32 32 H 0.96994 * 120.00297 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47147 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.47458 * 60.00000 * 12 2 1 35 35 H 0.97008 * 119.99531 * 0.02562 * 13 12 2 36 36 H 1.00897 * 110.99722 * 331.65757 * 18 16 14 37 37 H 1.08999 * 110.19217 * 146.98253 * 19 18 16 38 38 H 1.08994 * 110.19545 * 268.76363 * 19 18 16 39 39 H 1.08004 * 126.11139 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8767 -0.4914 3.6695 15 8 2.5739 -1.4776 3.7808 16 6 1.3740 0.2186 4.9000 17 1 0.3444 0.5453 4.7525 18 7 1.4632 -0.6739 6.0775 19 6 2.7999 -0.3898 6.6463 20 6 3.1131 1.0391 6.2644 21 7 3.8780 2.0628 6.5396 22 7 3.5350 3.1116 5.6765 23 1 3.9422 3.9918 5.6580 24 6 2.5379 2.6810 4.8752 25 6 2.2563 1.4042 5.2167 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7083 1.1608 -3.4844 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7579 2.3564 36 1 1.3849 -1.6419 5.8042 37 1 2.7768 -0.4928 7.7312 38 1 3.5415 -1.0656 6.2204 39 1 2.0520 3.2544 4.0996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575297418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:49 Heat of formation + Delta-G solvation = 56.897514 kcal Electronic energy + Delta-G solvation = -21986.994096 eV Core-core repulsion = 18738.709856 eV Total energy + Delta-G solvation = -3248.284240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.85825 -39.47431 -37.01889 -35.95069 -33.37681 -31.46757 -30.94374 -30.05170 -27.95532 -25.77909 -25.69301 -25.09537 -24.03503 -21.36311 -19.90263 -19.76821 -18.80807 -17.89501 -17.18046 -16.09202 -15.78854 -15.25645 -15.15228 -14.77030 -14.49976 -14.08707 -13.76268 -13.18169 -13.10761 -12.90782 -12.73462 -12.29577 -12.23919 -11.94554 -11.42339 -11.23288 -10.88618 -10.76521 -10.63983 -10.43380 -10.26829 -10.05995 -9.74094 -9.68536 -9.39459 -9.09689 -8.85259 -8.50752 -8.36465 -8.27353 -6.05749 -4.15874 1.69651 2.43490 2.56109 2.95781 3.27584 3.32003 3.35445 3.65501 3.91345 4.17579 4.37351 4.60557 4.97506 5.08481 5.21089 5.27863 5.44815 5.52128 5.70091 5.82820 6.17067 6.22570 6.27618 6.36337 6.45430 6.72145 6.76695 6.87695 6.95990 6.96721 7.03716 7.13857 7.30039 7.48317 7.50739 7.65390 7.96340 7.97120 8.09832 8.34055 8.58485 8.84395 9.50086 10.95581 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.004195 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.661362 B = 6673.168683 C = 7058.197302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.489 3.511 15 O -0.555 6.555 16 C 0.135 3.865 17 H 0.113 0.887 18 N -0.630 5.630 19 C 0.128 3.872 20 C 0.064 3.936 21 N -0.270 5.270 22 N -0.475 5.475 23 H 0.444 0.556 24 C 0.099 3.901 25 C -0.263 4.263 26 H 0.006 0.994 27 H 0.085 0.915 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.005 0.995 32 H 0.261 0.739 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.398 0.602 36 H 0.360 0.640 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 4.680 13.987 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.356 5.356 14 C 0.272 3.728 15 O -0.434 6.434 16 C 0.020 3.980 17 H 0.131 0.869 18 N -0.261 5.261 19 C -0.004 4.004 20 C -0.106 4.106 21 N -0.093 5.093 22 N -0.183 5.183 23 H 0.289 0.711 24 C -0.049 4.049 25 C -0.276 4.276 26 H 0.025 0.975 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.234 0.766 36 H 0.179 0.821 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.647 4.902 15.105 15.894 hybrid contribution 0.266 -0.158 -2.291 2.312 sum 0.913 4.743 12.814 13.694 Atomic orbital electron populations 1.21830 0.97664 0.99239 1.00099 1.18350 0.92843 0.92705 0.90538 1.21821 0.98492 0.98406 1.00008 1.20940 1.31575 1.12129 0.89908 0.92549 1.24869 0.94821 0.94909 0.98828 1.69784 1.36577 1.22737 1.23358 0.86635 0.79230 0.79837 0.82176 1.20247 1.21301 1.20312 1.21738 0.98070 0.95853 0.83487 1.46290 1.51984 1.31418 1.05956 1.21276 0.80975 0.84891 0.85651 1.90659 1.38731 1.27198 1.86853 1.20324 0.99461 0.89755 0.88459 0.86899 1.63827 1.27672 1.10977 1.23669 1.20792 0.91092 0.87243 1.01232 1.23141 0.94306 0.96441 0.96690 1.76925 1.22457 0.95409 1.14533 1.46451 1.29704 1.14162 1.27978 0.71107 1.21529 0.92169 0.94762 0.96417 1.20381 1.06631 0.95585 1.05015 0.97454 0.89593 0.95398 0.95570 0.89580 0.97578 0.92935 0.92878 0.92625 0.76647 0.82070 0.88362 0.90378 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 4 C -0.51 -13.03 8.01 -34.44 -0.28 -13.31 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.10 9.35 55.43 0.52 -22.58 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 13 N -0.71 -11.95 4.96 -60.30 -0.30 -12.25 16 14 C 0.49 8.09 6.97 -10.99 -0.08 8.01 16 15 O -0.56 -10.94 15.54 5.56 0.09 -10.85 16 16 C 0.13 1.78 3.79 -69.18 -0.26 1.52 16 17 H 0.11 1.29 8.14 -51.92 -0.42 0.86 16 18 N -0.63 -7.86 7.45 -108.29 -0.81 -8.67 16 19 C 0.13 1.59 7.09 -4.12 -0.03 1.56 16 20 C 0.06 0.90 8.24 -82.10 -0.68 0.22 16 21 N -0.27 -3.76 12.69 33.84 0.43 -3.33 16 22 N -0.47 -5.04 7.36 30.42 0.22 -4.82 16 23 H 0.44 3.05 8.96 -182.60 -1.64 1.42 16 24 C 0.10 1.07 11.98 -17.27 -0.21 0.86 16 25 C -0.26 -3.49 6.30 -104.78 -0.66 -4.15 16 26 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 27 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.57 8.14 -51.94 -0.42 0.14 16 30 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.40 5.99 6.16 -40.82 -0.25 5.74 16 36 H 0.36 4.44 7.88 -39.29 -0.31 4.13 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 39 H 0.18 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 316.68 15.07 4.77 4.77 Total: -1.00 -30.33 316.68 -8.33 -38.66 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.45 Total: 8.45 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.78 Total: -4.81 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.07 Total: -51.65 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.33 -8.33 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.557 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds