Wall clock time and date at job start Tue Mar 31 2020 00:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00361 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47491 * 119.99896 * 8 6 4 11 11 H 1.48511 * 109.47242 * 239.99873 * 8 6 4 12 12 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 13 13 N 1.46499 * 109.47555 * 300.00682 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 H 1.09004 * 110.16592 * 319.01784 * 16 14 13 18 18 N 1.48019 * 110.19485 * 197.21857 * 16 14 13 19 19 C 1.48211 * 104.05505 * 268.80891 * 18 16 14 20 20 C 1.51195 * 105.76363 * 332.08631 * 19 18 16 21 21 N 1.30713 * 143.91954 * 197.62403 * 20 19 18 22 22 N 1.40101 * 108.25497 * 180.02562 * 21 20 19 23 23 H 0.97004 * 126.03241 * 180.02562 * 22 21 20 24 24 C 1.34967 * 107.93003 * 0.02562 * 22 21 20 25 25 C 1.35151 * 107.77478 * 359.97438 * 24 22 21 26 26 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 27 27 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 28 28 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 31 31 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 32 32 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47382 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47216 * 60.00680 * 12 2 1 35 35 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 36 36 H 1.00902 * 111.00481 * 28.34670 * 18 16 14 37 37 H 1.09000 * 110.18270 * 213.01782 * 19 18 16 38 38 H 1.08997 * 110.26580 * 91.19998 * 19 18 16 39 39 H 1.07992 * 126.11236 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1201 -4.0079 9 1 3.1466 -2.2868 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3702 0.2159 4.9000 17 1 1.4237 1.2958 4.7621 18 7 2.1614 -0.1878 6.0840 19 6 1.4216 -1.3491 6.6324 20 6 -0.0219 -1.1424 6.2329 21 7 -1.2511 -1.5062 6.4883 22 7 -2.1036 -0.8118 5.6200 23 1 -3.0702 -0.8868 5.5883 24 6 -1.3425 -0.0201 4.8354 25 6 -0.0520 -0.2038 5.1923 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6765 1.9563 0.8901 32 1 0.7087 1.1613 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 0.9942 0.7581 2.3564 36 1 3.1001 -0.4475 5.8204 37 1 1.5116 -1.3736 7.7184 38 1 1.8018 -2.2760 6.2029 39 1 -1.7008 0.6425 4.0615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575297419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:53 Heat of formation + Delta-G solvation = 56.814372 kcal Electronic energy + Delta-G solvation = -21996.308281 eV Core-core repulsion = 18748.020435 eV Total energy + Delta-G solvation = -3248.287845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.85604 -39.47340 -37.01305 -35.94698 -33.37964 -31.46914 -30.94609 -30.04315 -27.95337 -25.78164 -25.69580 -25.10080 -24.03409 -21.36208 -19.90015 -19.76962 -18.81046 -17.89411 -17.17890 -16.09022 -15.79480 -15.26491 -15.14894 -14.76406 -14.49646 -14.08771 -13.75851 -13.18429 -13.10552 -12.91079 -12.73924 -12.29674 -12.24177 -11.94103 -11.43105 -11.24869 -10.91958 -10.70041 -10.63995 -10.44179 -10.26767 -10.05800 -9.74185 -9.68994 -9.39676 -9.09838 -8.83855 -8.51285 -8.37023 -8.27527 -6.06369 -4.16245 1.69725 2.43506 2.56136 2.95919 3.24307 3.33165 3.37601 3.65734 3.91083 4.17300 4.37155 4.60669 4.97558 5.08456 5.20746 5.27907 5.44602 5.52096 5.70044 5.82888 6.16835 6.22289 6.27513 6.36011 6.45221 6.72064 6.76422 6.87543 6.95906 6.96522 7.03899 7.13978 7.29906 7.48327 7.50526 7.65390 7.96054 7.97127 8.09698 8.33793 8.58491 8.84579 9.49873 10.95050 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.004214 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.285674 B = 6642.406659 C = 7034.839712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.489 3.511 15 O -0.555 6.555 16 C 0.135 3.865 17 H 0.113 0.887 18 N -0.630 5.630 19 C 0.127 3.873 20 C 0.063 3.937 21 N -0.270 5.270 22 N -0.475 5.475 23 H 0.444 0.556 24 C 0.099 3.901 25 C -0.263 4.263 26 H 0.005 0.995 27 H 0.086 0.914 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.006 0.994 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.398 0.602 36 H 0.360 0.640 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 1.839 13.975 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.356 5.356 14 C 0.272 3.728 15 O -0.435 6.435 16 C 0.020 3.980 17 H 0.131 0.869 18 N -0.261 5.261 19 C -0.004 4.004 20 C -0.106 4.106 21 N -0.093 5.093 22 N -0.183 5.183 23 H 0.289 0.711 24 C -0.049 4.049 25 C -0.276 4.276 26 H 0.024 0.976 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.233 0.767 36 H 0.180 0.820 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.858 1.034 15.084 15.881 hybrid contribution 0.062 -0.267 -2.305 2.321 sum -4.795 0.767 12.780 13.671 Atomic orbital electron populations 1.21820 0.97822 0.99072 1.00008 1.18359 0.92761 0.92811 0.90575 1.21828 0.98638 0.98259 1.00098 1.21019 1.31411 1.12083 0.89882 0.92435 1.24873 0.94841 0.94917 0.98860 1.69809 1.36710 1.22791 1.23138 0.86523 0.78656 0.79781 0.82977 1.19764 1.21070 1.21014 1.21736 0.98173 0.95750 0.83483 1.46282 1.51872 1.31530 1.05956 1.21285 0.80697 0.85153 0.85671 1.90658 1.39442 1.26507 1.86847 1.20318 0.88364 1.00904 0.88425 0.86891 1.63880 1.06002 1.32161 1.24087 1.20825 0.84055 0.94227 1.01271 1.23139 0.94504 0.96169 0.96786 1.76924 0.99534 1.18524 1.14332 1.46453 1.09472 1.33965 1.28399 0.71104 1.21528 0.90338 0.96391 0.96598 1.20377 0.93790 1.08291 1.05164 0.97578 0.89575 0.95572 0.95398 0.89593 0.97461 0.93056 0.92630 0.92873 0.76656 0.82035 0.88355 0.90384 0.79994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.99 8.01 -34.44 -0.28 -13.27 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.10 9.35 55.43 0.52 -22.58 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 13 N -0.71 -11.95 4.96 -60.29 -0.30 -12.25 16 14 C 0.49 8.08 6.97 -10.98 -0.08 8.01 16 15 O -0.56 -10.94 15.55 5.55 0.09 -10.85 16 16 C 0.13 1.78 3.79 -69.19 -0.26 1.52 16 17 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 18 N -0.63 -7.86 7.46 -108.14 -0.81 -8.66 16 19 C 0.13 1.59 7.11 -4.01 -0.03 1.56 16 20 C 0.06 0.89 8.24 -82.10 -0.68 0.22 16 21 N -0.27 -3.76 12.69 33.84 0.43 -3.33 16 22 N -0.47 -5.04 7.36 30.42 0.22 -4.82 16 23 H 0.44 3.06 8.96 -182.59 -1.64 1.42 16 24 C 0.10 1.07 11.98 -17.27 -0.21 0.86 16 25 C -0.26 -3.49 6.29 -104.78 -0.66 -4.15 16 26 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 27 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 31 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 32 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 5.99 6.16 -40.82 -0.25 5.74 16 36 H 0.36 4.44 7.86 -39.29 -0.31 4.14 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.03 7.96 -51.93 -0.41 0.61 16 39 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -30.37 316.71 -8.32 -38.70 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.45 Total: 8.40 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.77 Total: -4.81 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.07 Total: -51.64 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.37 -8.32 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.511 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds