Wall clock time and date at job start Tue Mar 31 2020 00:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00361 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47491 * 119.99896 * 8 6 4 11 11 H 1.48511 * 109.47242 * 239.99873 * 8 6 4 12 12 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 13 13 N 1.46499 * 109.47555 * 300.00682 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 H 1.09004 * 110.16592 * 319.01784 * 16 14 13 18 18 N 1.48019 * 110.19485 * 197.21857 * 16 14 13 19 19 C 1.48211 * 104.05505 * 268.80891 * 18 16 14 20 20 C 1.51195 * 105.76363 * 332.08631 * 19 18 16 21 21 N 1.30713 * 143.91954 * 197.62403 * 20 19 18 22 22 N 1.40101 * 108.25497 * 180.02562 * 21 20 19 23 23 H 0.97004 * 126.03241 * 180.02562 * 22 21 20 24 24 C 1.34967 * 107.93003 * 0.02562 * 22 21 20 25 25 C 1.35151 * 107.77478 * 359.97438 * 24 22 21 26 26 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 27 27 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 28 28 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 31 31 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 32 32 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47382 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47216 * 60.00680 * 12 2 1 35 35 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 36 36 H 1.00902 * 111.00481 * 28.34670 * 18 16 14 37 37 H 1.09000 * 110.18270 * 213.01782 * 19 18 16 38 38 H 1.08997 * 110.26580 * 91.19998 * 19 18 16 39 39 H 1.07992 * 126.11236 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1201 -4.0079 9 1 3.1466 -2.2868 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3702 0.2159 4.9000 17 1 1.4237 1.2958 4.7621 18 7 2.1614 -0.1878 6.0840 19 6 1.4216 -1.3491 6.6324 20 6 -0.0219 -1.1424 6.2329 21 7 -1.2511 -1.5062 6.4883 22 7 -2.1036 -0.8118 5.6200 23 1 -3.0702 -0.8868 5.5883 24 6 -1.3425 -0.0201 4.8354 25 6 -0.0520 -0.2038 5.1923 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6765 1.9563 0.8901 32 1 0.7087 1.1613 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 0.9942 0.7581 2.3564 36 1 3.1001 -0.4475 5.8204 37 1 1.5116 -1.3736 7.7184 38 1 1.8018 -2.2760 6.2029 39 1 -1.7008 0.6425 4.0615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575297419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:52 Heat of formation + Delta-G solvation = 33.532145 kcal Electronic energy + Delta-G solvation = -21997.317874 eV Core-core repulsion = 18748.020435 eV Total energy + Delta-G solvation = -3249.297439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.80710 -40.77390 -38.45153 -37.27007 -35.02324 -32.88440 -32.23308 -31.04287 -29.04822 -27.53354 -27.41780 -26.70525 -25.16371 -22.55595 -20.96080 -20.85611 -20.52274 -18.98302 -18.27838 -17.73146 -17.10310 -16.69422 -16.54429 -16.04027 -15.92642 -15.26062 -14.98240 -14.73266 -14.47095 -14.24758 -13.98130 -13.93349 -13.28852 -13.15816 -13.08879 -12.90069 -12.67747 -12.57251 -12.23435 -12.13962 -11.62762 -11.46720 -11.40255 -11.17245 -10.70458 -10.65839 -10.39057 -10.06350 -9.93752 -9.31554 -8.02133 -6.17187 0.81225 1.38602 1.40646 1.45591 1.54203 1.66643 1.82609 2.33403 2.50510 2.94772 3.19017 3.21691 3.70266 3.88147 4.13378 4.36387 4.46039 4.48792 4.52499 4.62497 4.73845 4.78923 4.91321 5.01016 5.08688 5.13398 5.22032 5.26089 5.37767 5.39188 5.60061 5.68513 5.70130 6.07950 6.18459 6.23762 6.36579 6.45143 6.58113 6.65112 6.86992 7.27259 7.50533 8.96556 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.004214 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.285674 B = 6642.406659 C = 7034.839712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.041 0.959 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.149 3.851 13 N -0.699 5.699 14 C 0.489 3.511 15 O -0.590 6.590 16 C 0.146 3.854 17 H 0.139 0.861 18 N -0.624 5.624 19 C 0.126 3.874 20 C 0.043 3.957 21 N -0.300 5.300 22 N -0.462 5.462 23 H 0.459 0.541 24 C 0.116 3.884 25 C -0.292 4.292 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.013 0.987 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.260 0.740 33 H 0.038 0.962 34 H 0.031 0.969 35 H 0.411 0.589 36 H 0.360 0.640 37 H 0.117 0.883 38 H 0.065 0.935 39 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 3.029 14.662 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.059 0.941 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.768 3.232 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.349 5.349 14 C 0.275 3.725 15 O -0.472 6.472 16 C 0.031 3.969 17 H 0.156 0.844 18 N -0.255 5.255 19 C -0.005 4.005 20 C -0.125 4.125 21 N -0.124 5.124 22 N -0.172 5.172 23 H 0.308 0.692 24 C -0.033 4.033 25 C -0.305 4.305 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.248 0.752 36 H 0.179 0.821 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.961 2.238 15.794 17.029 hybrid contribution 0.351 -0.659 -2.495 2.604 sum -5.610 1.579 13.299 14.520 Atomic orbital electron populations 1.21653 0.96941 0.98464 1.00629 1.18358 0.93404 0.93112 0.90087 1.21665 0.97924 0.97640 1.00583 1.21299 1.31591 1.12057 0.91730 0.94100 1.25394 0.95174 0.95586 1.00779 1.69902 1.36954 1.23208 1.23493 0.85769 0.78133 0.78758 0.80496 1.20244 1.20777 1.20677 1.21245 0.96991 0.94800 0.84470 1.46068 1.52097 1.31714 1.05055 1.22008 0.79652 0.84598 0.86287 1.90646 1.40947 1.28209 1.87362 1.20315 0.88486 1.01620 0.86457 0.84405 1.63948 1.05960 1.32047 1.23495 1.20865 0.83703 0.93600 1.02285 1.23372 0.94889 0.96730 0.97537 1.76848 0.99926 1.19769 1.15825 1.46514 1.10226 1.33021 1.27450 0.69230 1.22141 0.89510 0.95494 0.96145 1.20578 0.94494 1.09401 1.05989 0.93856 0.91923 0.96731 0.96387 0.91959 0.93983 0.93046 0.94335 0.95019 0.75186 0.82072 0.86557 0.91741 0.76197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 8.08 71.98 0.58 -4.40 16 2 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 3 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 4 C -0.53 -27.39 8.01 25.60 0.21 -27.19 16 5 H 0.04 2.20 7.74 -2.91 -0.02 2.17 16 6 C 0.03 1.58 5.15 84.66 0.44 2.01 16 7 N -0.90 -46.50 9.35 21.45 0.20 -46.30 16 8 Si 0.94 42.01 29.54 68.60 2.03 44.03 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.15 6.11 4.50 86.38 0.39 6.50 16 13 N -0.70 -22.26 4.96 -463.06 -2.30 -24.56 16 14 C 0.49 15.47 6.97 87.66 0.61 16.08 16 15 O -0.59 -23.15 15.55 -3.04 -0.05 -23.19 16 16 C 0.15 3.51 3.79 43.34 0.16 3.68 16 17 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 18 N -0.62 -14.61 7.46 -496.05 -3.70 -18.31 16 19 C 0.13 3.04 7.11 85.46 0.61 3.65 16 20 C 0.04 1.16 8.24 43.35 0.36 1.52 16 21 N -0.30 -7.88 12.69 -46.86 -0.59 -8.48 16 22 N -0.46 -8.56 7.36 -57.68 -0.42 -8.99 16 23 H 0.46 5.02 8.96 -213.31 -1.91 3.11 16 24 C 0.12 2.09 11.98 83.50 1.00 3.09 16 25 C -0.29 -6.97 6.29 -19.97 -0.13 -7.10 16 26 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 27 H 0.06 2.95 6.07 -2.39 -0.01 2.93 16 28 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 2.95 6.07 -2.39 -0.01 2.93 16 31 H 0.04 1.43 6.86 -2.38 -0.02 1.41 16 32 H 0.26 12.98 8.31 -92.70 -0.77 12.21 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 10.93 6.16 -92.71 -0.57 10.36 16 36 H 0.36 8.55 7.86 -89.69 -0.70 7.84 16 37 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 1.71 7.96 -2.39 -0.02 1.69 16 39 H 0.22 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -65.70 316.71 -2.14 -67.83 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -2.08 Total: 22.37 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.78 Total: -4.41 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -6.82 Total: -106.63 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -65.70 -2.14 -67.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.364 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds