Wall clock time and date at job start Tue Mar 31 2020 00:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46847 * 2 1 4 4 N 1.46892 * 109.47390 * 239.99535 * 2 1 3 5 5 C 1.53005 * 109.47171 * 119.99331 * 2 1 3 6 6 N 1.46496 * 109.46807 * 65.00271 * 5 2 1 7 7 C 1.34777 * 120.00099 * 179.97438 * 6 5 2 8 8 O 1.21577 * 119.99827 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00422 * 179.97438 * 7 6 5 10 10 C 1.39239 * 120.00405 * 185.80033 * 9 7 6 11 11 C 1.39693 * 119.57304 * 18.80792 * 10 9 7 12 12 C 1.38641 * 119.49495 * 180.02562 * 11 10 9 13 13 C 1.38361 * 118.67060 * 359.73341 * 12 11 10 14 14 C 1.40572 * 119.12979 * 0.53335 * 13 12 11 15 15 C 1.41328 * 119.78467 * 179.72881 * 14 13 12 16 16 H 1.08003 * 120.00133 * 6.98045 * 15 14 13 17 17 C 1.40024 * 120.00038 * 186.97700 * 15 14 13 18 18 N 1.30746 * 120.00260 * 181.93444 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 1.93817 * 17 15 14 20 20 H 1.48496 * 109.47403 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.46951 * 299.99645 * 19 17 15 22 22 H 1.48492 * 109.47090 * 59.99491 * 19 17 15 23 23 N 1.31900 * 119.57825 * 198.83121 * 10 9 7 24 24 H 1.08998 * 109.47526 * 300.00194 * 1 2 3 25 25 H 1.09000 * 109.46970 * 60.00691 * 1 2 3 26 26 H 1.09000 * 109.46925 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47329 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46771 * 299.99431 * 3 2 1 29 29 H 1.09002 * 109.47700 * 59.99694 * 3 2 1 30 30 H 1.00900 * 110.99973 * 56.04621 * 4 2 1 31 31 H 1.00903 * 111.00374 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.46984 * 305.00519 * 5 2 1 33 33 H 1.09002 * 109.47139 * 185.00230 * 5 2 1 34 34 H 0.97001 * 120.00437 * 359.97438 * 6 5 2 35 35 H 0.97001 * 119.99346 * 5.81122 * 9 7 6 36 36 H 1.08001 * 120.25043 * 0.02562 * 11 10 9 37 37 H 1.08001 * 120.66587 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.43474 * 180.26074 * 13 12 11 39 39 H 0.96992 * 119.99851 * 354.83157 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0400 -0.7211 1.2494 6 7 1.6525 -2.1327 1.1908 7 6 1.9964 -2.9680 2.1909 8 8 2.6280 -2.5500 3.1420 9 7 1.6395 -4.2666 2.1373 10 6 1.8880 -5.1024 3.2229 11 6 2.1308 -4.5451 4.4806 12 6 2.3786 -5.3789 5.5603 13 6 2.3721 -6.7475 5.3573 14 6 2.1268 -7.2467 4.0663 15 6 2.1226 -8.6421 3.8423 16 1 2.1948 -9.3233 4.6772 17 6 2.0249 -9.1414 2.5377 18 7 1.9829 -10.4321 2.3332 19 14 1.9545 -7.9634 1.0896 20 1 1.8541 -8.7374 -0.1737 21 1 0.7675 -7.0816 1.2261 22 1 3.1865 -7.1348 1.0653 23 7 1.8917 -6.4100 3.0503 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9562 -0.8901 29 1 1.6765 1.9565 0.8899 30 1 1.6442 -0.2741 -2.0371 31 1 3.0283 -0.7056 -1.2228 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 1.1483 -2.4662 0.4321 35 1 1.2096 -4.6189 1.3423 36 1 2.1255 -3.4730 4.6110 37 1 2.5682 -4.9684 6.5411 38 1 2.5575 -7.4233 6.1791 39 1 2.0947 -11.0448 3.0767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575357602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:56 Heat of formation + Delta-G solvation = -6.161620 kcal Electronic energy + Delta-G solvation = -21498.105002 eV Core-core repulsion = 18247.086313 eV Total energy + Delta-G solvation = -3251.018689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.29253 -38.64671 -37.70467 -34.47313 -33.80742 -33.28266 -31.04252 -29.96864 -29.34200 -27.69405 -26.36838 -25.19651 -22.23143 -21.66532 -20.31115 -19.81457 -18.55294 -17.76231 -17.08216 -16.12244 -15.85403 -15.14509 -15.12958 -14.88720 -14.37432 -14.15389 -13.82526 -13.58144 -13.17088 -13.01251 -12.88385 -12.60706 -12.35177 -12.16568 -12.15428 -11.79190 -11.65562 -11.16932 -11.12603 -10.74443 -10.31284 -9.93312 -9.61526 -9.35615 -9.11600 -9.09792 -8.89758 -8.48052 -7.74103 -7.28114 -7.18982 -4.71890 2.46750 2.71433 2.83430 3.52030 3.59009 3.72332 4.01125 4.08780 4.33091 4.43594 4.45833 4.59714 4.71669 4.72410 5.17567 5.25156 5.44976 5.47955 5.59210 5.62687 5.66491 5.67474 5.88996 5.92092 6.16919 6.44467 6.49971 6.59800 6.72561 6.82991 7.03091 7.08609 7.24119 7.41248 7.50383 7.68329 7.82332 8.01709 8.29271 8.39146 8.70096 8.86545 9.47823 10.05526 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.004503 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.220203 B = 6216.217440 C = 7124.457273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.099 3.901 3 C -0.178 4.178 4 N -0.838 5.838 5 C 0.155 3.845 6 N -0.733 5.733 7 C 0.707 3.293 8 O -0.570 6.570 9 N -0.668 5.668 10 C 0.406 3.594 11 C -0.310 4.310 12 C -0.034 4.034 13 C -0.281 4.281 14 C 0.275 3.725 15 C -0.478 4.478 16 H 0.083 0.917 17 C 0.043 3.957 18 N -0.809 5.809 19 Si 1.159 2.841 20 H -0.334 1.334 21 H -0.285 1.285 22 H -0.294 1.294 23 N -0.601 5.601 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.342 0.658 31 H 0.345 0.655 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.403 0.597 35 H 0.404 0.596 36 H 0.142 0.858 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 19.829 -7.355 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 C -0.238 4.238 4 N -0.369 5.369 5 C 0.029 3.971 6 N -0.390 5.390 7 C 0.407 3.593 8 O -0.447 6.447 9 N -0.315 5.315 10 C 0.175 3.825 11 C -0.335 4.335 12 C -0.058 4.058 13 C -0.304 4.304 14 C 0.151 3.849 15 C -0.511 4.511 16 H 0.101 0.899 17 C -0.177 4.177 18 N -0.431 5.431 19 Si 0.995 3.005 20 H -0.268 1.268 21 H -0.213 1.213 22 H -0.222 1.222 23 N -0.327 5.327 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.239 0.761 35 H 0.239 0.761 36 H 0.159 0.841 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.535 19.207 -8.531 21.169 hybrid contribution 0.420 0.673 1.673 1.852 sum -2.115 19.881 -6.858 21.137 Atomic orbital electron populations 1.21848 0.93197 1.02890 1.01975 1.21086 0.95946 0.91536 0.90857 1.22561 1.01617 0.96823 1.02819 1.58834 1.14375 1.59792 1.03923 1.21152 0.99764 0.79869 0.96289 1.44922 1.61279 1.08974 1.23821 1.15753 0.79865 0.80514 0.83167 1.90838 1.44148 1.76222 1.33449 1.42336 1.62438 1.07837 1.18869 1.17806 0.92852 0.87079 0.84795 1.21557 1.19205 1.01351 0.91411 1.20926 0.94543 0.93310 0.97067 1.21576 1.16007 0.94722 0.98050 1.18255 0.87234 0.92517 0.86857 1.20704 1.43813 0.90511 0.96035 0.89901 1.27766 0.88508 0.98266 1.03193 1.70645 1.31467 1.03485 1.37551 0.81761 0.78800 0.70581 0.69379 1.26770 1.21329 1.22240 1.65872 1.30653 1.01902 1.34255 0.91794 0.92527 0.91545 0.92226 0.92158 0.91554 0.84452 0.84196 0.91164 0.91849 0.76112 0.76135 0.84107 0.87687 0.87755 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.61 37.16 0.32 -0.67 16 2 C 0.10 0.71 0.88 -131.61 -0.12 0.60 16 3 C -0.18 -1.04 8.76 37.16 0.33 -0.72 16 4 N -0.84 -5.68 8.32 0.74 0.01 -5.67 16 5 C 0.15 1.63 4.73 -4.04 -0.02 1.61 16 6 N -0.73 -9.34 5.12 -65.23 -0.33 -9.68 16 7 C 0.71 12.61 8.40 -86.92 -0.73 11.88 16 8 O -0.57 -11.95 13.14 5.30 0.07 -11.88 16 9 N -0.67 -13.05 5.42 -15.79 -0.09 -13.14 16 10 C 0.41 9.70 7.51 -155.00 -1.16 8.53 16 11 C -0.31 -7.27 8.83 -38.89 -0.34 -7.62 16 12 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 13 C -0.28 -6.91 9.83 -38.66 -0.38 -7.29 16 14 C 0.28 7.44 6.39 -85.00 -0.54 6.90 16 15 C -0.48 -13.35 9.58 -37.74 -0.36 -13.71 16 16 H 0.08 2.30 8.05 -52.48 -0.42 1.88 16 17 C 0.04 1.20 5.52 -17.34 -0.10 1.11 16 18 N -0.81 -22.46 13.65 55.55 0.76 -21.70 16 19 Si 1.16 28.78 25.53 -169.99 -4.34 24.44 16 20 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 21 H -0.29 -6.80 6.70 56.52 0.38 -6.42 16 22 H -0.29 -7.47 7.10 56.52 0.40 -7.07 16 23 N -0.60 -15.69 4.58 -10.26 -0.05 -15.74 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.53 7.18 -51.93 -0.37 0.16 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.34 1.79 8.98 -39.29 -0.35 1.44 16 31 H 0.34 2.30 9.00 -39.29 -0.35 1.94 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 4.47 7.34 -40.82 -0.30 4.17 16 35 H 0.40 7.00 8.84 -40.82 -0.36 6.63 16 36 H 0.14 3.26 5.33 -52.50 -0.28 2.98 16 37 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.10 2.39 8.06 -52.49 -0.42 1.96 16 39 H 0.28 7.49 8.72 -40.82 -0.36 7.14 16 LS Contribution 322.42 15.07 4.86 4.86 Total: -1.00 -32.03 322.42 -8.04 -40.07 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.42 Total: 8.99 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -3.51 Total: -0.55 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: 0.30 Total: -65.93 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 28.78 SS G_CDS: -4.34 Total: 24.44 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.03 -8.04 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575357602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.910 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds