Wall clock time and date at job start Tue Mar 31 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46847 * 2 1 4 4 N 1.46892 * 109.47390 * 239.99535 * 2 1 3 5 5 C 1.53005 * 109.47171 * 119.99331 * 2 1 3 6 6 N 1.46496 * 109.46807 * 65.00271 * 5 2 1 7 7 C 1.34777 * 120.00099 * 179.97438 * 6 5 2 8 8 O 1.21577 * 119.99827 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00422 * 179.97438 * 7 6 5 10 10 C 1.39239 * 120.00405 * 185.80033 * 9 7 6 11 11 C 1.39693 * 119.57304 * 18.80792 * 10 9 7 12 12 C 1.38641 * 119.49495 * 180.02562 * 11 10 9 13 13 C 1.38361 * 118.67060 * 359.73341 * 12 11 10 14 14 C 1.40572 * 119.12979 * 0.53335 * 13 12 11 15 15 C 1.41328 * 119.78467 * 179.72881 * 14 13 12 16 16 H 1.08003 * 120.00133 * 6.98045 * 15 14 13 17 17 C 1.40024 * 120.00038 * 186.97700 * 15 14 13 18 18 N 1.30746 * 120.00260 * 181.93444 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 1.93817 * 17 15 14 20 20 H 1.48496 * 109.47403 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.46951 * 299.99645 * 19 17 15 22 22 H 1.48492 * 109.47090 * 59.99491 * 19 17 15 23 23 N 1.31900 * 119.57825 * 198.83121 * 10 9 7 24 24 H 1.08998 * 109.47526 * 300.00194 * 1 2 3 25 25 H 1.09000 * 109.46970 * 60.00691 * 1 2 3 26 26 H 1.09000 * 109.46925 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47329 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46771 * 299.99431 * 3 2 1 29 29 H 1.09002 * 109.47700 * 59.99694 * 3 2 1 30 30 H 1.00900 * 110.99973 * 56.04621 * 4 2 1 31 31 H 1.00903 * 111.00374 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.46984 * 305.00519 * 5 2 1 33 33 H 1.09002 * 109.47139 * 185.00230 * 5 2 1 34 34 H 0.97001 * 120.00437 * 359.97438 * 6 5 2 35 35 H 0.97001 * 119.99346 * 5.81122 * 9 7 6 36 36 H 1.08001 * 120.25043 * 0.02562 * 11 10 9 37 37 H 1.08001 * 120.66587 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.43474 * 180.26074 * 13 12 11 39 39 H 0.96992 * 119.99851 * 354.83157 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0400 -0.7211 1.2494 6 7 1.6525 -2.1327 1.1908 7 6 1.9964 -2.9680 2.1909 8 8 2.6280 -2.5500 3.1420 9 7 1.6395 -4.2666 2.1373 10 6 1.8880 -5.1024 3.2229 11 6 2.1308 -4.5451 4.4806 12 6 2.3786 -5.3789 5.5603 13 6 2.3721 -6.7475 5.3573 14 6 2.1268 -7.2467 4.0663 15 6 2.1226 -8.6421 3.8423 16 1 2.1948 -9.3233 4.6772 17 6 2.0249 -9.1414 2.5377 18 7 1.9829 -10.4321 2.3332 19 14 1.9545 -7.9634 1.0896 20 1 1.8541 -8.7374 -0.1737 21 1 0.7675 -7.0816 1.2261 22 1 3.1865 -7.1348 1.0653 23 7 1.8917 -6.4100 3.0503 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9562 -0.8901 29 1 1.6765 1.9565 0.8899 30 1 1.6442 -0.2741 -2.0371 31 1 3.0283 -0.7056 -1.2228 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 1.1483 -2.4662 0.4321 35 1 1.2096 -4.6189 1.3423 36 1 2.1255 -3.4730 4.6110 37 1 2.5682 -4.9684 6.5411 38 1 2.5575 -7.4233 6.1791 39 1 2.0947 -11.0448 3.0767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575357602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:54 Heat of formation + Delta-G solvation = -29.635143 kcal Electronic energy + Delta-G solvation = -21499.122891 eV Core-core repulsion = 18247.086313 eV Total energy + Delta-G solvation = -3252.036578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.80093 -40.18185 -38.73678 -36.22909 -35.39549 -34.74546 -32.96840 -31.29616 -30.39672 -28.20953 -27.56313 -26.97218 -23.90527 -23.49909 -21.77906 -20.75927 -20.34242 -19.33267 -18.52943 -17.20324 -16.93146 -16.75909 -16.49117 -16.29416 -15.86845 -15.45177 -15.10742 -14.85540 -14.81301 -14.44349 -14.21325 -13.76589 -13.62654 -13.58722 -12.99410 -12.93582 -12.74634 -12.66747 -12.24817 -12.19658 -11.80604 -11.74861 -11.60891 -11.14685 -10.94976 -10.39750 -10.11067 -9.72893 -9.63209 -9.25437 -9.12585 -6.80282 0.61292 0.76581 1.43511 1.58850 1.70940 2.03646 2.07369 2.45681 2.70813 3.09825 3.56673 3.58530 3.71719 3.96026 4.08911 4.15350 4.42008 4.61256 4.62915 4.71218 4.72621 4.75322 4.83474 4.93600 4.94613 5.06292 5.21807 5.36016 5.37285 5.39635 5.44234 5.47613 5.71302 5.80039 5.93354 6.07923 6.26026 6.42957 6.62521 6.64020 6.90276 7.42721 7.54210 7.96731 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.004503 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.220203 B = 6216.217440 C = 7124.457273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.109 3.891 3 C -0.174 4.174 4 N -0.845 5.845 5 C 0.149 3.851 6 N -0.709 5.709 7 C 0.705 3.295 8 O -0.601 6.601 9 N -0.665 5.665 10 C 0.396 3.604 11 C -0.307 4.307 12 C -0.026 4.026 13 C -0.295 4.295 14 C 0.259 3.741 15 C -0.509 4.509 16 H 0.069 0.931 17 C 0.015 3.985 18 N -0.831 5.831 19 Si 1.190 2.810 20 H -0.329 1.329 21 H -0.272 1.272 22 H -0.304 1.304 23 N -0.614 5.614 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.354 0.646 31 H 0.346 0.654 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.414 0.586 35 H 0.414 0.586 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 22.596 -8.200 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 C -0.234 4.234 4 N -0.377 5.377 5 C 0.025 3.975 6 N -0.365 5.365 7 C 0.405 3.595 8 O -0.481 6.481 9 N -0.313 5.313 10 C 0.164 3.836 11 C -0.331 4.331 12 C -0.050 4.050 13 C -0.317 4.317 14 C 0.134 3.866 15 C -0.542 4.542 16 H 0.087 0.913 17 C -0.201 4.201 18 N -0.454 5.454 19 Si 1.024 2.976 20 H -0.263 1.263 21 H -0.200 1.200 22 H -0.233 1.233 23 N -0.340 5.340 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.252 0.748 35 H 0.251 0.749 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.133 0.867 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.990 22.015 -9.429 24.135 hybrid contribution 0.570 0.043 1.995 2.075 sum -2.420 22.058 -7.433 23.402 Atomic orbital electron populations 1.21856 0.92770 1.02472 1.02827 1.20959 0.96092 0.91867 0.89496 1.22516 1.01605 0.95696 1.03563 1.58808 1.14601 1.60026 1.04247 1.21395 0.99484 0.78458 0.98187 1.44845 1.59837 1.09236 1.22574 1.15909 0.79630 0.80172 0.83771 1.90800 1.45669 1.76551 1.35038 1.42296 1.62558 1.08145 1.18322 1.18124 0.92310 0.86856 0.86359 1.21883 1.17765 1.01935 0.91536 1.21333 0.92633 0.92372 0.98696 1.21751 1.16430 0.95985 0.97544 1.18446 0.87448 0.92461 0.88248 1.20708 1.46334 0.91192 0.95926 0.91252 1.28522 0.88139 0.98863 1.04608 1.70663 1.33521 1.03723 1.37537 0.81355 0.78672 0.69577 0.68022 1.26270 1.19990 1.23285 1.65860 1.30986 1.02864 1.34310 0.91703 0.91025 0.92557 0.92260 0.90748 0.91488 0.83174 0.84060 0.91438 0.92585 0.74810 0.74937 0.83303 0.83822 0.86669 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.61 71.98 0.62 -0.97 16 2 C 0.11 1.30 0.88 3.53 0.00 1.30 16 3 C -0.17 -1.57 8.76 71.98 0.63 -0.94 16 4 N -0.84 -9.23 8.32 -151.57 -1.26 -10.49 16 5 C 0.15 2.84 4.73 86.38 0.41 3.25 16 6 N -0.71 -16.58 5.12 -478.55 -2.45 -19.03 16 7 C 0.71 23.86 8.40 179.05 1.50 25.37 16 8 O -0.60 -24.21 13.14 -3.96 -0.05 -24.27 16 9 N -0.67 -24.85 5.42 -322.12 -1.75 -26.59 16 10 C 0.40 18.32 7.51 133.27 1.00 19.32 16 11 C -0.31 -13.75 8.83 22.72 0.20 -13.55 16 12 C -0.03 -1.12 10.15 22.40 0.23 -0.90 16 13 C -0.29 -14.21 9.83 22.87 0.22 -13.98 16 14 C 0.26 14.00 6.39 40.19 0.26 14.25 16 15 C -0.51 -29.01 9.58 23.46 0.22 -28.79 16 16 H 0.07 4.00 8.05 -2.91 -0.02 3.97 16 17 C 0.02 0.85 5.52 85.29 0.47 1.32 16 18 N -0.83 -47.03 13.65 21.84 0.30 -46.73 16 19 Si 1.19 58.32 25.53 68.60 1.75 60.07 16 20 H -0.33 -15.67 7.11 99.48 0.71 -14.96 16 21 H -0.27 -12.60 6.70 99.48 0.67 -11.93 16 22 H -0.30 -15.24 7.10 99.48 0.71 -14.53 16 23 N -0.61 -31.59 4.58 -186.37 -0.85 -32.44 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.75 7.18 -2.39 -0.02 0.74 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.35 2.66 8.98 -89.69 -0.81 1.85 16 31 H 0.35 3.79 9.00 -89.69 -0.81 2.98 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.41 8.16 7.34 -92.71 -0.68 7.48 16 35 H 0.41 13.54 8.84 -92.71 -0.82 12.72 16 36 H 0.15 6.53 5.33 -3.17 -0.02 6.52 16 37 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 39 H 0.28 15.37 8.72 -92.71 -0.81 14.56 16 Total: -1.00 -68.22 322.42 -0.62 -68.84 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -2.08 Total: 24.97 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.77 Total: 5.68 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -6.01 Total: -135.29 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 58.32 SS G_CDS: 1.75 Total: 60.07 kcal Total: -68.22 -0.62 -68.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575357602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.206 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds