Wall clock time and date at job start Tue Mar 31 2020 00:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47057 * 2 1 4 4 N 1.46900 * 109.47277 * 240.00132 * 2 1 3 5 5 C 1.52995 * 109.47335 * 120.00109 * 2 1 3 6 6 N 1.46504 * 109.47183 * 64.99825 * 5 2 1 7 7 C 1.34775 * 120.00198 * 180.02562 * 6 5 2 8 8 O 1.21574 * 119.99963 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99888 * 180.27580 * 7 6 5 10 10 C 1.39466 * 119.99735 * 175.17880 * 9 7 6 11 11 C 1.38642 * 119.64613 * 186.28771 * 10 9 7 12 12 C 1.40820 * 118.67475 * 179.97438 * 11 10 9 13 13 C 1.41544 * 120.99811 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99808 * 201.15377 * 13 12 11 15 15 C 1.40030 * 120.00045 * 21.14426 * 13 12 11 16 16 N 1.30743 * 119.99956 * 12.11539 * 15 13 12 17 17 Si 1.86801 * 120.00104 * 192.11144 * 15 13 12 18 18 H 1.48497 * 109.46987 * 60.00480 * 17 15 13 19 19 H 1.48502 * 109.46828 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46928 * 300.00094 * 17 15 13 21 21 C 1.41159 * 118.00310 * 0.02562 * 12 11 10 22 22 C 1.36591 * 119.12979 * 359.97438 * 21 12 11 23 23 N 1.32069 * 121.25808 * 359.74900 * 22 21 12 24 24 H 1.09002 * 109.46902 * 300.00172 * 1 2 3 25 25 H 1.08999 * 109.46976 * 59.99876 * 1 2 3 26 26 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46564 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47329 * 299.99908 * 3 2 1 29 29 H 1.09001 * 109.46904 * 60.00302 * 3 2 1 30 30 H 1.00900 * 111.00068 * 56.04425 * 4 2 1 31 31 H 1.00899 * 111.00494 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47086 * 305.00318 * 5 2 1 33 33 H 1.08998 * 109.47400 * 185.00125 * 5 2 1 34 34 H 0.97000 * 119.99843 * 0.02562 * 6 5 2 35 35 H 0.97000 * 120.00022 * 355.18347 * 9 7 6 36 36 H 1.08000 * 120.66368 * 0.02562 * 11 10 9 37 37 H 0.96996 * 120.00359 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.43838 * 179.97438 * 21 12 11 39 39 H 1.08002 * 119.37343 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2492 6 7 1.6524 -2.1329 1.1905 7 6 1.9956 -2.9681 2.1911 8 8 2.6271 -2.5502 3.1421 9 7 1.6438 -4.2679 2.1344 10 6 2.0840 -5.1529 3.1183 11 6 1.8290 -6.5091 2.9845 12 6 2.2832 -7.3844 3.9898 13 6 2.0494 -8.7778 3.9034 14 1 2.0834 -9.3872 4.7942 15 6 1.7740 -9.3658 2.6628 16 7 1.9631 -8.6873 1.5613 17 14 1.1366 -11.1199 2.5815 18 1 -0.1504 -11.2133 3.3163 19 1 0.9261 -11.5047 1.1627 20 1 2.1279 -12.0359 3.2006 21 6 2.9776 -6.8304 5.0868 22 6 3.1814 -5.4806 5.1317 23 7 2.7460 -4.6893 4.1681 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6442 -0.2739 -2.0372 31 1 3.0283 -0.7056 -1.2230 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 1.1488 -2.4664 0.4315 35 1 1.0845 -4.5878 1.4093 36 1 1.2934 -6.8868 2.1261 37 1 1.7727 -9.0947 0.7019 38 1 3.3430 -7.4655 5.8803 39 1 3.7126 -5.0526 5.9691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575358029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:59 Heat of formation + Delta-G solvation = 4.282220 kcal Electronic energy + Delta-G solvation = -21218.627027 eV Core-core repulsion = 17968.061217 eV Total energy + Delta-G solvation = -3250.565810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.75603 -38.37955 -37.38754 -34.27060 -33.61864 -33.22295 -30.42095 -29.79890 -28.55865 -27.58411 -26.06392 -25.81388 -21.89918 -21.53668 -20.00365 -19.72190 -17.86022 -17.56305 -16.38136 -15.89040 -15.45341 -15.17637 -14.85313 -14.34136 -14.15456 -14.09493 -13.83668 -13.37285 -12.93705 -12.87275 -12.73746 -12.53869 -12.41062 -12.12647 -11.91659 -11.52663 -11.38678 -11.13895 -11.00436 -10.83910 -10.24953 -10.04391 -9.67848 -9.45767 -9.32038 -8.99012 -8.58865 -7.91504 -7.64111 -6.90638 -6.68911 -4.57644 2.78183 2.88097 3.02976 3.06053 3.20315 3.32069 3.87562 4.00799 4.22642 4.48449 4.65364 4.76609 4.78318 4.89756 5.27913 5.37234 5.55802 5.61953 5.77323 5.77632 5.81232 5.83125 6.01871 6.07150 6.63820 6.72628 6.80811 6.88667 6.99291 7.00734 7.19776 7.24032 7.44550 7.55174 7.58516 7.95257 8.20075 8.52991 8.57211 8.80778 8.81975 9.34033 9.83816 10.11658 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.003735 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.311636 B = 7494.333231 C = 8334.615151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.099 3.901 3 C -0.178 4.178 4 N -0.837 5.837 5 C 0.157 3.843 6 N -0.741 5.741 7 C 0.689 3.311 8 O -0.540 6.540 9 N -0.668 5.668 10 C 0.355 3.645 11 C -0.251 4.251 12 C 0.140 3.860 13 C -0.450 4.450 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.790 5.790 17 Si 0.915 3.085 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.287 4.287 22 C 0.118 3.882 23 N -0.553 5.553 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.340 0.660 31 H 0.344 0.656 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.398 0.602 35 H 0.403 0.597 36 H 0.139 0.861 37 H 0.281 0.719 38 H 0.100 0.900 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 12.473 -8.254 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.006 3.994 3 C -0.238 4.238 4 N -0.368 5.368 5 C 0.032 3.968 6 N -0.400 5.400 7 C 0.389 3.611 8 O -0.412 6.412 9 N -0.315 5.315 10 C 0.129 3.871 11 C -0.277 4.277 12 C 0.132 3.868 13 C -0.482 4.482 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.417 5.417 17 Si 0.739 3.261 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.311 4.311 22 C -0.035 4.035 23 N -0.273 5.273 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.233 0.767 35 H 0.238 0.762 36 H 0.157 0.843 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.359 13.173 -7.289 15.425 hybrid contribution -0.401 -1.076 -1.236 1.687 sum -3.760 12.097 -8.525 15.269 Atomic orbital electron populations 1.21831 0.93344 1.02809 1.01772 1.21086 0.95829 0.91457 0.91012 1.22561 1.01596 0.96979 1.02661 1.58825 1.14330 1.59788 1.03823 1.21040 0.99472 0.80542 0.95787 1.44989 1.62319 1.08888 1.23828 1.16128 0.80795 0.81031 0.83176 1.90994 1.42394 1.75086 1.32718 1.42539 1.53990 1.06834 1.28176 1.18014 0.94719 0.86375 0.88008 1.21784 1.11099 0.89264 1.05539 1.17569 0.86539 0.93233 0.89501 1.19573 1.41784 0.92646 0.94171 0.90151 1.25975 0.92725 1.00487 0.95174 1.69734 1.34874 1.38132 0.98911 0.86261 0.80306 0.81502 0.78022 1.18789 1.20270 1.18939 1.21632 1.10381 0.95796 1.03285 1.21461 0.96645 0.90259 0.95171 1.67216 1.18389 1.38795 1.02860 0.91886 0.92712 0.91571 0.92275 0.92300 0.91619 0.84688 0.84249 0.91605 0.92252 0.76739 0.76229 0.84341 0.90789 0.88185 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.61 37.16 0.32 -0.83 16 2 C 0.10 0.86 0.88 -131.60 -0.12 0.75 16 3 C -0.18 -1.28 8.76 37.16 0.33 -0.96 16 4 N -0.84 -6.75 8.32 0.74 0.01 -6.75 16 5 C 0.16 1.98 4.73 -4.04 -0.02 1.96 16 6 N -0.74 -10.92 5.12 -65.23 -0.33 -11.26 16 7 C 0.69 14.07 8.52 -86.92 -0.74 13.32 16 8 O -0.54 -13.39 14.60 5.30 0.08 -13.32 16 9 N -0.67 -13.92 5.40 -15.86 -0.09 -14.01 16 10 C 0.35 9.00 7.42 -154.68 -1.15 7.85 16 11 C -0.25 -6.55 8.67 -38.46 -0.33 -6.89 16 12 C 0.14 3.77 5.65 -106.55 -0.60 3.17 16 13 C -0.45 -11.76 9.15 -37.65 -0.34 -12.10 16 14 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 15 C 0.07 1.82 5.31 -17.34 -0.09 1.73 16 16 N -0.79 -19.62 10.50 55.55 0.58 -19.04 16 17 Si 0.91 18.11 29.58 -169.99 -5.03 13.08 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 C -0.29 -7.26 9.85 -39.07 -0.38 -7.64 16 22 C 0.12 2.96 11.10 -18.04 -0.20 2.76 16 23 N -0.55 -14.80 7.86 -12.75 -0.10 -14.90 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.61 7.18 -51.93 -0.37 0.23 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.34 2.15 8.98 -39.29 -0.35 1.80 16 31 H 0.34 2.78 9.00 -39.29 -0.35 2.43 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 5.06 7.34 -40.82 -0.30 4.76 16 35 H 0.40 7.00 8.72 -40.82 -0.36 6.65 16 36 H 0.14 3.58 5.81 -52.49 -0.30 3.28 16 37 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 38 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -32.25 327.65 -8.67 -40.92 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -5.39 Total: 17.21 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -3.34 Total: 3.13 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: 0.07 Total: -65.96 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.25 -8.67 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575358029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.201 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds