Wall clock time and date at job start Tue Mar 31 2020 00:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47057 * 2 1 4 4 N 1.46900 * 109.47277 * 240.00132 * 2 1 3 5 5 C 1.52995 * 109.47335 * 120.00109 * 2 1 3 6 6 N 1.46504 * 109.47183 * 64.99825 * 5 2 1 7 7 C 1.34775 * 120.00198 * 180.02562 * 6 5 2 8 8 O 1.21574 * 119.99963 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99888 * 180.27580 * 7 6 5 10 10 C 1.39466 * 119.99735 * 175.17880 * 9 7 6 11 11 C 1.38642 * 119.64613 * 186.28771 * 10 9 7 12 12 C 1.40820 * 118.67475 * 179.97438 * 11 10 9 13 13 C 1.41544 * 120.99811 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99808 * 201.15377 * 13 12 11 15 15 C 1.40030 * 120.00045 * 21.14426 * 13 12 11 16 16 N 1.30743 * 119.99956 * 12.11539 * 15 13 12 17 17 Si 1.86801 * 120.00104 * 192.11144 * 15 13 12 18 18 H 1.48497 * 109.46987 * 60.00480 * 17 15 13 19 19 H 1.48502 * 109.46828 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46928 * 300.00094 * 17 15 13 21 21 C 1.41159 * 118.00310 * 0.02562 * 12 11 10 22 22 C 1.36591 * 119.12979 * 359.97438 * 21 12 11 23 23 N 1.32069 * 121.25808 * 359.74900 * 22 21 12 24 24 H 1.09002 * 109.46902 * 300.00172 * 1 2 3 25 25 H 1.08999 * 109.46976 * 59.99876 * 1 2 3 26 26 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46564 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47329 * 299.99908 * 3 2 1 29 29 H 1.09001 * 109.46904 * 60.00302 * 3 2 1 30 30 H 1.00900 * 111.00068 * 56.04425 * 4 2 1 31 31 H 1.00899 * 111.00494 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47086 * 305.00318 * 5 2 1 33 33 H 1.08998 * 109.47400 * 185.00125 * 5 2 1 34 34 H 0.97000 * 119.99843 * 0.02562 * 6 5 2 35 35 H 0.97000 * 120.00022 * 355.18347 * 9 7 6 36 36 H 1.08000 * 120.66368 * 0.02562 * 11 10 9 37 37 H 0.96996 * 120.00359 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.43838 * 179.97438 * 21 12 11 39 39 H 1.08002 * 119.37343 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2492 6 7 1.6524 -2.1329 1.1905 7 6 1.9956 -2.9681 2.1911 8 8 2.6271 -2.5502 3.1421 9 7 1.6438 -4.2679 2.1344 10 6 2.0840 -5.1529 3.1183 11 6 1.8290 -6.5091 2.9845 12 6 2.2832 -7.3844 3.9898 13 6 2.0494 -8.7778 3.9034 14 1 2.0834 -9.3872 4.7942 15 6 1.7740 -9.3658 2.6628 16 7 1.9631 -8.6873 1.5613 17 14 1.1366 -11.1199 2.5815 18 1 -0.1504 -11.2133 3.3163 19 1 0.9261 -11.5047 1.1627 20 1 2.1279 -12.0359 3.2006 21 6 2.9776 -6.8304 5.0868 22 6 3.1814 -5.4806 5.1317 23 7 2.7460 -4.6893 4.1681 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6442 -0.2739 -2.0372 31 1 3.0283 -0.7056 -1.2230 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 1.1488 -2.4664 0.4315 35 1 1.0845 -4.5878 1.4093 36 1 1.2934 -6.8868 2.1261 37 1 1.7727 -9.0947 0.7019 38 1 3.3430 -7.4655 5.8803 39 1 3.7126 -5.0526 5.9691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575358029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:58 Heat of formation + Delta-G solvation = -19.174357 kcal Electronic energy + Delta-G solvation = -21219.644181 eV Core-core repulsion = 17968.061217 eV Total energy + Delta-G solvation = -3251.582964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38330 -39.93484 -38.60611 -36.11599 -35.44419 -34.56553 -32.37155 -30.65978 -30.19501 -28.21913 -27.92191 -27.07401 -23.79641 -23.31710 -21.62309 -20.70851 -19.46555 -19.27405 -17.84637 -17.08904 -16.88955 -16.53712 -16.23817 -15.99805 -15.92195 -15.44636 -14.94916 -14.79186 -14.57868 -14.35365 -14.22726 -13.63821 -13.54644 -13.12617 -12.95198 -12.84085 -12.74768 -12.65527 -12.21497 -12.01670 -11.90458 -11.80345 -11.49257 -11.24359 -11.15494 -9.99917 -9.88483 -9.63717 -9.58518 -8.78645 -8.55543 -6.55804 0.87697 1.04765 1.42889 1.54445 1.61839 1.71670 2.21843 2.33524 2.87251 3.25351 3.56837 3.72962 3.81344 3.96031 4.15362 4.19747 4.60331 4.67714 4.73412 4.79145 4.89114 4.92664 4.93292 4.96838 5.05426 5.13729 5.20353 5.29669 5.36071 5.54023 5.59102 5.70008 5.90152 6.04266 6.25191 6.30886 6.60518 6.63233 6.82961 6.86317 7.07914 7.68793 7.95361 8.29018 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.003735 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.311636 B = 7494.333231 C = 8334.615151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.111 3.889 3 C -0.174 4.174 4 N -0.842 5.842 5 C 0.152 3.848 6 N -0.716 5.716 7 C 0.686 3.314 8 O -0.586 6.586 9 N -0.661 5.661 10 C 0.350 3.650 11 C -0.268 4.268 12 C 0.111 3.889 13 C -0.479 4.479 14 H 0.084 0.916 15 C 0.036 3.964 16 N -0.811 5.811 17 Si 0.992 3.008 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.261 1.261 21 C -0.300 4.300 22 C 0.112 3.888 23 N -0.581 5.581 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.354 0.646 31 H 0.345 0.655 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.411 0.589 35 H 0.418 0.582 36 H 0.137 0.863 37 H 0.292 0.708 38 H 0.115 0.885 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 12.302 -9.794 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 C -0.233 4.233 4 N -0.375 5.375 5 C 0.027 3.973 6 N -0.374 5.374 7 C 0.385 3.615 8 O -0.462 6.462 9 N -0.310 5.310 10 C 0.123 3.877 11 C -0.294 4.294 12 C 0.102 3.898 13 C -0.509 4.509 14 H 0.102 0.898 15 C -0.181 4.181 16 N -0.437 5.437 17 Si 0.812 3.188 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.185 1.185 21 C -0.324 4.324 22 C -0.041 4.041 23 N -0.301 5.301 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.248 0.752 35 H 0.255 0.745 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.241 13.045 -8.899 16.350 hybrid contribution -0.119 -0.977 -0.811 1.275 sum -4.361 12.067 -9.709 16.091 Atomic orbital electron populations 1.21834 0.92662 1.02452 1.02765 1.20939 0.96155 0.91791 0.89366 1.22515 1.01528 0.95729 1.03563 1.58781 1.14516 1.60028 1.04143 1.21262 0.98861 0.79236 0.97897 1.44817 1.60968 1.09118 1.22479 1.16338 0.80450 0.81057 0.83644 1.90956 1.44543 1.75833 1.34851 1.42429 1.53972 1.06811 1.27755 1.18236 0.94089 0.86972 0.88379 1.21772 1.12178 0.89670 1.05774 1.18017 0.87166 0.94204 0.90380 1.19890 1.43008 0.92668 0.95368 0.89775 1.26872 0.92106 1.04950 0.94174 1.69767 1.34126 1.40103 0.99705 0.85104 0.79518 0.75593 0.78599 1.18378 1.18912 1.18520 1.21821 1.10717 0.96247 1.03605 1.21903 0.96291 0.90349 0.95570 1.67331 1.19534 1.39495 1.03757 0.91929 0.90762 0.92581 0.92420 0.90448 0.91656 0.83161 0.84186 0.92427 0.93509 0.75202 0.74482 0.84578 0.89695 0.86666 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.61 71.98 0.62 -1.38 16 2 C 0.11 1.74 0.88 3.53 0.00 1.74 16 3 C -0.17 -2.14 8.76 71.98 0.63 -1.51 16 4 N -0.84 -11.92 8.32 -151.56 -1.26 -13.18 16 5 C 0.15 3.77 4.73 86.38 0.41 4.18 16 6 N -0.72 -20.75 5.12 -478.56 -2.45 -23.20 16 7 C 0.69 28.22 8.52 179.05 1.53 29.74 16 8 O -0.59 -29.68 14.60 -3.95 -0.06 -29.74 16 9 N -0.66 -27.83 5.40 -322.37 -1.74 -29.57 16 10 C 0.35 18.12 7.42 132.76 0.98 19.11 16 11 C -0.27 -14.29 8.67 23.00 0.20 -14.09 16 12 C 0.11 6.07 5.65 -21.12 -0.12 5.95 16 13 C -0.48 -25.13 9.15 23.52 0.22 -24.92 16 14 H 0.08 4.20 7.88 -2.91 -0.02 4.18 16 15 C 0.04 1.71 5.31 85.29 0.45 2.16 16 16 N -0.81 -39.96 10.50 21.84 0.23 -39.73 16 17 Si 0.99 36.07 29.58 68.60 2.03 38.10 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 21 C -0.30 -15.40 9.85 22.60 0.22 -15.18 16 22 C 0.11 5.68 11.10 84.27 0.94 6.62 16 23 N -0.58 -31.68 7.86 -194.26 -1.53 -33.21 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.92 7.18 -2.39 -0.02 0.90 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.35 3.54 8.98 -89.69 -0.81 2.73 16 31 H 0.34 5.00 9.00 -89.69 -0.81 4.19 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.41 9.96 7.34 -92.71 -0.68 9.28 16 35 H 0.42 14.50 8.72 -92.71 -0.81 13.69 16 36 H 0.14 7.18 5.81 -2.91 -0.02 7.16 16 37 H 0.29 12.83 8.29 -92.71 -0.77 12.07 16 38 H 0.12 5.37 8.06 -2.91 -0.02 5.35 16 39 H 0.15 6.39 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -70.25 327.65 -0.69 -70.93 By element: Atomic # 1 Polarization: 49.15 SS G_CDS: -1.99 Total: 47.16 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.08 Total: 12.42 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -6.75 Total: -138.88 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.06 Total: -29.74 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -70.25 -0.69 -70.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575358029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.758 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds