Wall clock time and date at job start Tue Mar 31 2020 01:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47001 * 2 1 4 4 H 1.09008 * 109.46450 * 55.00389 * 3 2 1 5 5 N 1.46897 * 109.47309 * 295.00520 * 3 2 1 6 6 C 1.52994 * 109.47269 * 175.00098 * 3 2 1 7 7 N 1.46503 * 109.47081 * 175.00460 * 6 3 2 8 8 C 1.34784 * 119.99777 * 179.97438 * 7 6 3 9 9 O 1.21569 * 120.00075 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99810 * 179.97438 * 8 7 6 11 11 C 1.39244 * 119.99884 * 185.79278 * 10 8 7 12 12 C 1.39680 * 119.57925 * 18.77204 * 11 10 8 13 13 C 1.38641 * 119.49708 * 179.97438 * 12 11 10 14 14 C 1.38354 * 118.67146 * 359.73015 * 13 12 11 15 15 C 1.40573 * 119.12950 * 0.51201 * 14 13 12 16 16 C 1.41327 * 119.78618 * 179.75324 * 15 14 13 17 17 H 1.08001 * 120.00023 * 8.65547 * 16 15 14 18 18 C 1.40030 * 120.00016 * 188.66014 * 16 15 14 19 19 N 1.30743 * 120.00004 * 195.96340 * 18 16 15 20 20 Si 1.86800 * 119.99913 * 15.96271 * 18 16 15 21 21 H 1.48494 * 109.46996 * 269.99954 * 20 18 16 22 22 H 1.48506 * 109.46904 * 30.00034 * 20 18 16 23 23 H 1.48492 * 109.47131 * 149.99955 * 20 18 16 24 24 N 1.31903 * 119.57143 * 198.75141 * 11 10 8 25 25 H 1.08993 * 109.47532 * 59.99732 * 1 2 3 26 26 H 1.09001 * 109.46597 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47149 * 299.99507 * 1 2 3 28 28 H 1.09004 * 109.46936 * 240.00672 * 2 1 3 29 29 H 1.08993 * 109.47532 * 120.00267 * 2 1 3 30 30 H 1.00902 * 111.00005 * 299.99625 * 5 3 2 31 31 H 1.00902 * 111.00043 * 63.95395 * 5 3 2 32 32 H 1.09000 * 109.47519 * 55.00580 * 6 3 2 33 33 H 1.09003 * 109.47364 * 295.00192 * 6 3 2 34 34 H 0.96993 * 120.00321 * 0.02562 * 7 6 3 35 35 H 0.97001 * 119.99723 * 5.79149 * 10 8 7 36 36 H 1.08007 * 120.24719 * 359.97438 * 12 11 10 37 37 H 1.08008 * 120.66254 * 179.97438 * 13 12 11 38 38 H 1.07998 * 120.43494 * 180.28819 * 14 13 12 39 39 H 0.97002 * 119.99686 * 354.92627 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6513 2.0994 -1.2551 6 6 3.5647 1.4444 0.1257 7 7 4.0629 2.8170 0.0060 8 6 5.3856 3.0633 0.0869 9 8 6.1652 2.1464 0.2587 10 7 5.8439 4.3259 -0.0237 11 6 7.2146 4.5682 -0.0613 12 6 8.0903 3.5273 -0.3784 13 6 9.4547 3.7705 -0.4159 14 6 9.9089 5.0482 -0.1413 15 6 8.9776 6.0521 0.1762 16 6 9.4267 7.3608 0.4642 17 1 10.4620 7.6236 0.3051 18 6 8.5293 8.3167 0.9559 19 7 8.8457 9.5850 0.9295 20 14 6.8800 7.7797 1.6496 21 1 5.8701 7.7539 0.5613 22 1 7.0088 6.4222 2.2378 23 1 6.4503 8.7360 2.7011 24 7 7.6692 5.7779 0.2026 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0421 1.6181 -2.0512 31 1 0.6475 2.1685 -1.3313 32 1 3.9954 0.8313 -0.6660 33 1 3.8499 1.0378 1.0960 34 1 3.4409 3.5485 -0.1307 35 1 5.2189 5.0658 -0.0771 36 1 7.7074 2.5404 -0.5928 37 1 10.1488 2.9794 -0.6585 38 1 10.9655 5.2705 -0.1670 39 1 9.7296 9.8583 0.6382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577122299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:03 Heat of formation + Delta-G solvation = -10.621161 kcal Electronic energy + Delta-G solvation = -21174.592081 eV Core-core repulsion = 17923.380011 eV Total energy + Delta-G solvation = -3251.212070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22161 -38.43986 -37.50877 -34.47927 -34.01428 -33.34948 -31.11510 -30.98363 -29.54486 -27.91112 -25.25169 -23.90140 -21.97799 -21.58991 -21.10829 -20.06530 -18.56588 -17.76199 -17.05715 -16.53974 -15.49305 -15.37503 -15.01650 -14.90007 -14.52362 -14.33232 -14.00767 -13.87045 -13.41206 -13.05128 -12.79226 -12.56129 -12.19755 -12.16807 -11.93834 -11.78585 -11.41077 -11.25763 -11.12808 -10.81212 -10.24999 -9.91238 -9.69798 -9.31768 -9.10476 -9.02733 -8.88865 -8.43120 -7.83097 -7.29068 -7.19967 -4.68507 2.48754 2.75978 2.84933 3.50484 3.52732 3.70445 3.95189 4.15545 4.29719 4.39301 4.50398 4.60856 4.66054 4.67853 5.02405 5.08991 5.23639 5.47567 5.53190 5.60349 5.63009 5.72748 5.82740 5.92859 6.19353 6.45496 6.52857 6.62800 6.72158 6.82773 7.05036 7.06974 7.27190 7.44302 7.51061 7.71375 7.85782 8.03621 8.31607 8.41620 8.71942 8.88374 9.53286 10.03762 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003999 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.913174 B = 7000.385672 C = 7842.498924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.158 4.158 3 C 0.077 3.923 4 H 0.088 0.912 5 N -0.842 5.842 6 C 0.148 3.852 7 N -0.735 5.735 8 C 0.707 3.293 9 O -0.570 6.570 10 N -0.667 5.667 11 C 0.402 3.598 12 C -0.310 4.310 13 C -0.036 4.036 14 C -0.282 4.282 15 C 0.276 3.724 16 C -0.484 4.484 17 H 0.083 0.917 18 C 0.049 3.951 19 N -0.807 5.807 20 Si 1.144 2.856 21 H -0.288 1.288 22 H -0.280 1.280 23 H -0.328 1.328 24 N -0.597 5.597 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.343 0.657 31 H 0.342 0.658 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.404 0.596 35 H 0.403 0.597 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.243 -14.309 -2.438 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C -0.035 4.035 4 H 0.106 0.894 5 N -0.372 5.372 6 C 0.023 3.977 7 N -0.391 5.391 8 C 0.407 3.593 9 O -0.447 6.447 10 N -0.314 5.314 11 C 0.170 3.830 12 C -0.335 4.335 13 C -0.061 4.061 14 C -0.305 4.305 15 C 0.152 3.848 16 C -0.516 4.516 17 H 0.101 0.899 18 C -0.172 4.172 19 N -0.429 5.429 20 Si 0.977 3.023 21 H -0.215 1.215 22 H -0.207 1.207 23 H -0.261 1.261 24 N -0.322 5.322 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.239 0.761 35 H 0.238 0.762 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.020 -13.233 -1.243 21.594 hybrid contribution 1.159 -1.328 -1.255 2.164 sum -15.860 -14.560 -2.498 21.675 Atomic orbital electron populations 1.21774 0.95398 1.02039 1.01861 1.22274 0.96507 0.97801 1.03184 1.21762 0.94686 0.93099 0.93938 0.89369 1.58849 1.16377 1.58049 1.03934 1.21160 0.91670 0.82842 1.02044 1.44906 1.05473 1.09941 1.78822 1.15753 0.82545 0.82885 0.78116 1.90835 1.54524 1.43739 1.55577 1.42314 1.06583 1.07394 1.75118 1.17794 0.81682 0.90782 0.92758 1.21550 0.92869 1.00658 1.18400 1.20911 0.94686 0.95621 0.94856 1.21583 0.98995 0.94006 1.15879 1.18169 0.85130 0.93239 0.88263 1.20632 0.98477 0.94352 1.38105 0.89889 1.27643 1.06491 0.91917 0.91162 1.70619 1.22394 1.16945 1.32907 0.82123 0.71887 0.73193 0.75073 1.21538 1.20738 1.26051 1.66134 1.17191 1.19908 1.28999 0.92851 0.92415 0.92371 0.91587 0.90926 0.84395 0.84380 0.91833 0.91219 0.76130 0.76212 0.84214 0.87777 0.87821 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.68 37.16 0.36 -0.38 16 2 C -0.16 -0.90 5.58 -26.73 -0.15 -1.05 16 3 C 0.08 0.54 2.96 -67.72 -0.20 0.34 16 4 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 5 N -0.84 -5.48 8.63 -4.67 -0.04 -5.52 16 6 C 0.15 1.53 5.34 -4.04 -0.02 1.51 16 7 N -0.73 -9.35 5.39 -65.23 -0.35 -9.70 16 8 C 0.71 12.66 8.40 -86.91 -0.73 11.93 16 9 O -0.57 -12.03 13.14 5.30 0.07 -11.96 16 10 N -0.67 -13.05 5.42 -15.79 -0.09 -13.13 16 11 C 0.40 9.63 7.51 -155.00 -1.16 8.46 16 12 C -0.31 -7.33 8.83 -38.89 -0.34 -7.67 16 13 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 14 C -0.28 -6.98 9.83 -38.66 -0.38 -7.36 16 15 C 0.28 7.48 6.27 -85.00 -0.53 6.95 16 16 C -0.48 -13.46 9.51 -37.74 -0.36 -13.82 16 17 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 18 C 0.05 1.36 5.51 -17.34 -0.10 1.27 16 19 N -0.81 -22.22 13.65 55.55 0.76 -21.46 16 20 Si 1.14 28.20 25.93 -169.99 -4.41 23.79 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -7.13 6.55 56.52 0.37 -6.76 16 23 H -0.33 -7.91 7.11 56.52 0.40 -7.51 16 24 N -0.60 -15.61 5.07 -10.26 -0.05 -15.67 16 25 H 0.05 0.23 6.87 -51.93 -0.36 -0.13 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.34 2.19 9.00 -39.29 -0.35 1.84 16 31 H 0.34 1.74 7.55 -39.29 -0.30 1.45 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.40 4.42 8.16 -40.82 -0.33 4.09 16 35 H 0.40 6.94 8.84 -40.82 -0.36 6.58 16 36 H 0.14 3.27 5.33 -52.50 -0.28 2.99 16 37 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 38 H 0.10 2.39 8.06 -52.49 -0.42 1.96 16 39 H 0.28 7.48 8.73 -40.82 -0.36 7.12 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -31.98 323.20 -8.65 -40.63 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.39 Total: 9.21 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -4.02 Total: -1.06 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: 0.23 Total: -65.48 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 28.20 SS G_CDS: -4.41 Total: 23.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.98 -8.65 -40.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577122299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.005 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds