Wall clock time and date at job start Tue Mar 31 2020 01:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47001 * 2 1 4 4 H 1.09008 * 109.46450 * 55.00389 * 3 2 1 5 5 N 1.46897 * 109.47309 * 295.00520 * 3 2 1 6 6 C 1.52994 * 109.47269 * 175.00098 * 3 2 1 7 7 N 1.46503 * 109.47081 * 175.00460 * 6 3 2 8 8 C 1.34784 * 119.99777 * 179.97438 * 7 6 3 9 9 O 1.21569 * 120.00075 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99810 * 179.97438 * 8 7 6 11 11 C 1.39244 * 119.99884 * 185.79278 * 10 8 7 12 12 C 1.39680 * 119.57925 * 18.77204 * 11 10 8 13 13 C 1.38641 * 119.49708 * 179.97438 * 12 11 10 14 14 C 1.38354 * 118.67146 * 359.73015 * 13 12 11 15 15 C 1.40573 * 119.12950 * 0.51201 * 14 13 12 16 16 C 1.41327 * 119.78618 * 179.75324 * 15 14 13 17 17 H 1.08001 * 120.00023 * 8.65547 * 16 15 14 18 18 C 1.40030 * 120.00016 * 188.66014 * 16 15 14 19 19 N 1.30743 * 120.00004 * 195.96340 * 18 16 15 20 20 Si 1.86800 * 119.99913 * 15.96271 * 18 16 15 21 21 H 1.48494 * 109.46996 * 269.99954 * 20 18 16 22 22 H 1.48506 * 109.46904 * 30.00034 * 20 18 16 23 23 H 1.48492 * 109.47131 * 149.99955 * 20 18 16 24 24 N 1.31903 * 119.57143 * 198.75141 * 11 10 8 25 25 H 1.08993 * 109.47532 * 59.99732 * 1 2 3 26 26 H 1.09001 * 109.46597 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47149 * 299.99507 * 1 2 3 28 28 H 1.09004 * 109.46936 * 240.00672 * 2 1 3 29 29 H 1.08993 * 109.47532 * 120.00267 * 2 1 3 30 30 H 1.00902 * 111.00005 * 299.99625 * 5 3 2 31 31 H 1.00902 * 111.00043 * 63.95395 * 5 3 2 32 32 H 1.09000 * 109.47519 * 55.00580 * 6 3 2 33 33 H 1.09003 * 109.47364 * 295.00192 * 6 3 2 34 34 H 0.96993 * 120.00321 * 0.02562 * 7 6 3 35 35 H 0.97001 * 119.99723 * 5.79149 * 10 8 7 36 36 H 1.08007 * 120.24719 * 359.97438 * 12 11 10 37 37 H 1.08008 * 120.66254 * 179.97438 * 13 12 11 38 38 H 1.07998 * 120.43494 * 180.28819 * 14 13 12 39 39 H 0.97002 * 119.99686 * 354.92627 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6513 2.0994 -1.2551 6 6 3.5647 1.4444 0.1257 7 7 4.0629 2.8170 0.0060 8 6 5.3856 3.0633 0.0869 9 8 6.1652 2.1464 0.2587 10 7 5.8439 4.3259 -0.0237 11 6 7.2146 4.5682 -0.0613 12 6 8.0903 3.5273 -0.3784 13 6 9.4547 3.7705 -0.4159 14 6 9.9089 5.0482 -0.1413 15 6 8.9776 6.0521 0.1762 16 6 9.4267 7.3608 0.4642 17 1 10.4620 7.6236 0.3051 18 6 8.5293 8.3167 0.9559 19 7 8.8457 9.5850 0.9295 20 14 6.8800 7.7797 1.6496 21 1 5.8701 7.7539 0.5613 22 1 7.0088 6.4222 2.2378 23 1 6.4503 8.7360 2.7011 24 7 7.6692 5.7779 0.2026 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0421 1.6181 -2.0512 31 1 0.6475 2.1685 -1.3313 32 1 3.9954 0.8313 -0.6660 33 1 3.8499 1.0378 1.0960 34 1 3.4409 3.5485 -0.1307 35 1 5.2189 5.0658 -0.0771 36 1 7.7074 2.5404 -0.5928 37 1 10.1488 2.9794 -0.6585 38 1 10.9655 5.2705 -0.1670 39 1 9.7296 9.8583 0.6382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577122299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:01 Heat of formation + Delta-G solvation = -33.977364 kcal Electronic energy + Delta-G solvation = -21175.604882 eV Core-core repulsion = 17923.380011 eV Total energy + Delta-G solvation = -3252.224871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.75167 -40.08187 -38.37711 -36.21132 -35.40785 -34.96767 -32.91300 -31.67803 -31.21218 -28.85881 -27.19708 -24.83550 -23.61773 -23.23462 -21.93940 -21.43854 -20.42061 -19.34071 -18.55313 -17.35499 -16.97364 -16.76778 -16.45728 -16.15390 -15.78463 -15.63449 -15.18702 -15.01601 -14.80498 -14.51072 -14.23669 -14.19728 -13.70396 -13.49672 -12.97974 -12.92023 -12.70417 -12.38926 -12.15011 -11.93417 -11.83365 -11.77136 -11.56131 -11.04649 -10.93736 -10.36186 -10.11423 -9.80483 -9.61471 -9.29312 -9.10888 -6.76550 0.62755 0.81488 1.45786 1.55230 1.67741 1.99530 2.07398 2.42710 2.67490 3.10419 3.60943 3.63868 3.81108 4.03304 4.11946 4.18707 4.41594 4.43914 4.57636 4.68295 4.73616 4.77348 4.78478 4.85130 4.94197 5.14128 5.25840 5.37019 5.38380 5.41821 5.44778 5.49612 5.73770 5.82118 5.96520 6.10118 6.24206 6.45154 6.61760 6.66172 6.93038 7.44922 7.58946 7.95614 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003999 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.913174 B = 7000.385672 C = 7842.498924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.090 3.910 4 H 0.092 0.908 5 N -0.847 5.847 6 C 0.144 3.856 7 N -0.710 5.710 8 C 0.705 3.295 9 O -0.602 6.602 10 N -0.664 5.664 11 C 0.393 3.607 12 C -0.309 4.309 13 C -0.029 4.029 14 C -0.297 4.297 15 C 0.259 3.741 16 C -0.513 4.513 17 H 0.069 0.931 18 C 0.022 3.978 19 N -0.826 5.826 20 Si 1.176 2.824 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.321 1.321 24 N -0.609 5.609 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.345 0.655 31 H 0.353 0.647 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.415 0.585 35 H 0.414 0.586 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.347 -16.032 -2.822 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C -0.022 4.022 4 H 0.111 0.889 5 N -0.379 5.379 6 C 0.019 3.981 7 N -0.367 5.367 8 C 0.405 3.595 9 O -0.482 6.482 10 N -0.312 5.312 11 C 0.160 3.840 12 C -0.333 4.333 13 C -0.054 4.054 14 C -0.320 4.320 15 C 0.134 3.866 16 C -0.546 4.546 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.449 5.449 20 Si 1.006 2.994 21 H -0.199 1.199 22 H -0.222 1.222 23 H -0.253 1.253 24 N -0.335 5.335 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.253 0.747 35 H 0.251 0.749 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.132 0.868 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.200 -14.955 -1.648 24.393 hybrid contribution 1.770 -1.010 -1.187 2.358 sum -17.429 -15.965 -2.834 23.805 Atomic orbital electron populations 1.21758 0.94452 1.02370 1.02281 1.22222 0.97214 0.96715 1.03156 1.21612 0.92055 0.94152 0.94421 0.88949 1.58829 1.17322 1.57994 1.03708 1.21388 0.93937 0.81107 1.01626 1.44833 1.03623 1.11493 1.76711 1.15921 0.83860 0.81819 0.77924 1.90797 1.55845 1.44381 1.57154 1.42263 1.05197 1.08607 1.75148 1.18105 0.83661 0.90218 0.92033 1.21867 0.93361 1.00884 1.17190 1.21311 0.95173 0.95795 0.93094 1.21756 0.99358 0.94431 1.16418 1.18373 0.86190 0.93536 0.88521 1.20635 0.98144 0.95462 1.40325 0.91284 1.28414 1.08286 0.91839 0.91027 1.70638 1.22577 1.17154 1.34535 0.81702 0.70376 0.72166 0.75121 1.19904 1.22176 1.25306 1.66125 1.16933 1.21055 1.29366 0.92097 0.92175 0.92296 0.91536 0.91123 0.84201 0.83187 0.92298 0.91705 0.74736 0.74921 0.83501 0.84030 0.86782 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.68 71.98 0.70 -0.38 16 2 C -0.15 -1.40 5.58 30.59 0.17 -1.23 16 3 C 0.09 1.03 2.96 44.91 0.13 1.16 16 4 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 5 N -0.85 -8.74 8.63 -168.68 -1.46 -10.19 16 6 C 0.14 2.67 5.34 86.38 0.46 3.13 16 7 N -0.71 -16.46 5.39 -478.54 -2.58 -19.04 16 8 C 0.70 23.91 8.40 179.05 1.50 25.41 16 9 O -0.60 -24.45 13.14 -3.93 -0.05 -24.50 16 10 N -0.66 -24.80 5.42 -322.13 -1.75 -26.55 16 11 C 0.39 18.28 7.51 133.26 1.00 19.28 16 12 C -0.31 -14.02 8.83 22.71 0.20 -13.82 16 13 C -0.03 -1.29 10.15 22.39 0.23 -1.06 16 14 C -0.30 -14.49 9.83 22.87 0.22 -14.27 16 15 C 0.26 14.05 6.27 40.19 0.25 14.30 16 16 C -0.51 -29.16 9.51 23.46 0.22 -28.94 16 17 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 18 C 0.02 1.22 5.51 85.29 0.47 1.69 16 19 N -0.83 -46.20 13.65 21.84 0.30 -45.90 16 20 Si 1.18 56.92 25.93 68.60 1.78 58.70 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.29 -14.75 6.55 99.48 0.65 -14.09 16 23 H -0.32 -14.99 7.11 99.48 0.71 -14.28 16 24 N -0.61 -31.43 5.07 -186.38 -0.95 -32.38 16 25 H 0.06 0.35 6.87 -2.39 -0.02 0.33 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.34 3.52 9.00 -89.69 -0.81 2.72 16 31 H 0.35 2.57 7.55 -89.69 -0.68 1.89 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.42 7.94 8.16 -92.71 -0.76 7.19 16 35 H 0.41 13.41 8.84 -92.71 -0.82 12.59 16 36 H 0.15 6.56 5.33 -3.21 -0.02 6.54 16 37 H 0.14 5.06 8.06 -2.91 -0.02 5.03 16 38 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 39 H 0.28 15.28 8.73 -92.71 -0.81 14.47 16 Total: -1.00 -67.98 323.20 -1.18 -69.16 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -2.04 Total: 25.44 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.56 Total: 5.27 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -6.43 Total: -134.06 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 56.92 SS G_CDS: 1.78 Total: 58.70 kcal Total: -67.98 -1.18 -69.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577122299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.183 kcal (2) G-P(sol) polarization free energy of solvation -67.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds