Wall clock time and date at job start Tue Mar 31 2020 00:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38048 * 126.29006 * 2 1 4 4 C 1.47424 * 126.41513 * 0.03174 * 3 2 1 5 5 O 1.21602 * 120.00470 * 359.70673 * 4 3 2 6 6 N 1.34779 * 119.99757 * 179.71213 * 4 3 2 7 7 C 1.46500 * 119.99895 * 180.02562 * 6 4 3 8 8 H 1.09008 * 112.90540 * 336.24622 * 7 6 4 9 9 C 1.53775 * 113.61656 * 107.50207 * 7 6 4 10 10 C 1.53779 * 87.08438 * 139.98199 * 9 7 6 11 11 H 1.09002 * 113.61731 * 89.11293 * 10 9 7 12 12 N 1.46904 * 113.69026 * 220.00632 * 10 9 7 13 13 C 1.53777 * 113.61534 * 204.99945 * 7 6 4 14 14 C 1.41296 * 107.16497 * 179.76743 * 3 2 1 15 15 N 1.30442 * 108.02437 * 0.23961 * 14 3 2 16 16 N 1.34264 * 126.29028 * 180.19137 * 2 1 3 17 17 C 1.46495 * 125.75567 * 359.97438 * 16 2 1 18 18 C 1.50700 * 109.47030 * 270.31970 * 17 16 2 19 19 H 1.08002 * 120.00151 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00118 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99832 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00242 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47194 * 89.99578 * 22 20 18 24 24 H 1.48492 * 109.47473 * 209.99904 * 22 20 18 25 25 H 1.48503 * 109.46761 * 330.00200 * 22 20 18 26 26 H 1.09002 * 109.47643 * 90.02044 * 1 2 3 27 27 H 1.08999 * 109.47360 * 210.02287 * 1 2 3 28 28 H 1.09002 * 109.46824 * 330.02034 * 1 2 3 29 29 H 0.97002 * 120.00021 * 359.97438 * 6 4 3 30 30 H 1.08993 * 113.61636 * 25.42563 * 9 7 6 31 31 H 1.09008 * 113.61006 * 254.52805 * 9 7 6 32 32 H 1.00895 * 111.00085 * 279.06326 * 12 10 9 33 33 H 1.00899 * 110.99866 * 43.01621 * 12 10 9 34 34 H 1.08997 * 113.61941 * 105.46412 * 13 7 6 35 35 H 1.09009 * 113.68972 * 334.57492 * 13 7 6 36 36 H 1.07997 * 125.98102 * 180.20922 * 14 3 2 37 37 H 1.09005 * 109.47239 * 30.31628 * 17 16 2 38 38 H 1.08997 * 109.47062 * 150.31883 * 17 16 2 39 39 H 0.97000 * 120.00055 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0007 5 8 0.6995 2.7878 -0.0041 6 7 2.7999 3.5107 0.0064 7 6 2.3644 4.9094 0.0077 8 1 1.3624 5.0422 -0.4006 9 6 2.5804 5.6207 1.3538 10 6 3.0161 6.8530 0.5434 11 1 2.1923 7.5171 0.2817 12 7 4.1616 7.5664 1.1239 13 6 3.4029 5.8785 -0.5816 14 6 3.6590 0.6498 0.0055 15 7 3.6339 -0.6544 0.0033 16 7 2.3016 -1.0822 -0.0036 17 6 1.8501 -2.4758 -0.0077 18 6 1.6882 -2.9556 1.4116 19 1 1.9009 -2.2892 2.2345 20 6 1.2696 -4.2456 1.6598 21 7 1.0111 -5.0572 0.6579 22 14 1.0696 -4.8406 3.4192 23 1 -0.3154 -4.5670 3.8799 24 1 1.3325 -6.3007 3.4809 25 1 2.0328 -4.1267 4.2956 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 3.7461 3.2973 0.0105 30 1 3.3807 5.1871 1.9533 31 1 1.6612 5.7729 1.9196 32 1 3.8668 8.1748 1.8728 33 1 4.8679 6.9191 1.4406 34 1 3.1480 6.2387 -1.5782 35 1 4.4288 5.5164 -0.5120 36 1 4.5448 1.2676 0.0101 37 1 0.8939 -2.5464 -0.5264 38 1 2.5872 -3.0951 -0.5188 39 1 0.7163 -5.9647 0.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579526636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:13 Heat of formation + Delta-G solvation = 20.376250 kcal Electronic energy + Delta-G solvation = -21094.270814 eV Core-core repulsion = 17844.402893 eV Total energy + Delta-G solvation = -3249.867921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.32164 -40.78878 -39.11456 -35.83985 -34.92099 -33.78006 -32.78319 -31.92352 -29.18778 -28.21553 -26.60176 -25.56495 -24.48936 -22.92619 -21.28114 -21.03634 -20.23820 -18.87751 -18.37860 -17.48200 -16.94008 -16.76563 -16.40159 -16.16978 -15.60015 -15.40194 -15.18388 -14.93178 -14.35179 -14.10017 -14.06688 -13.70703 -13.64561 -13.59903 -13.39620 -13.10800 -12.96560 -12.72025 -12.33046 -12.12561 -11.99846 -11.87735 -11.75423 -11.69816 -10.77694 -10.75535 -10.27099 -10.04138 -9.54558 -9.38466 -8.39244 -6.56008 0.67470 1.32067 1.36616 1.38063 1.48089 1.65729 2.30871 2.40620 2.53673 2.92850 3.52151 3.67751 3.74134 3.74767 3.89496 3.98398 4.05019 4.14239 4.22770 4.52502 4.64332 4.70935 4.77661 4.78714 4.85538 4.89478 5.01553 5.05338 5.09683 5.15293 5.32372 5.47543 5.63758 5.72022 5.73398 6.03718 6.26303 6.53335 6.62456 6.67933 6.84841 7.15359 7.38801 8.68674 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.003342 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.581683 B = 8375.643453 C = 8473.018883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.144 3.856 3 C -0.332 4.332 4 C 0.604 3.396 5 O -0.586 6.586 6 N -0.703 5.703 7 C 0.119 3.881 8 H 0.098 0.902 9 C -0.187 4.187 10 C 0.083 3.917 11 H 0.109 0.891 12 N -0.841 5.841 13 C -0.129 4.129 14 C 0.080 3.920 15 N -0.337 5.337 16 N -0.339 5.339 17 C 0.267 3.733 18 C -0.557 4.557 19 H 0.051 0.949 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.273 1.273 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.412 0.588 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.350 0.650 33 H 0.348 0.652 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.227 0.773 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 21.266 -0.079 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.008 3.992 3 C -0.347 4.347 4 C 0.394 3.606 5 O -0.467 6.467 6 N -0.354 5.354 7 C 0.013 3.987 8 H 0.116 0.884 9 C -0.228 4.228 10 C -0.030 4.030 11 H 0.127 0.873 12 N -0.370 5.370 13 C -0.167 4.167 14 C -0.107 4.107 15 N -0.157 5.157 16 N -0.116 5.116 17 C 0.149 3.851 18 C -0.595 4.595 19 H 0.070 0.930 20 C -0.178 4.178 21 N -0.554 5.554 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.198 1.198 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.249 0.751 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.243 0.757 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.595 20.363 -0.879 20.893 hybrid contribution -0.488 -0.868 1.589 1.875 sum 4.107 19.494 0.710 19.935 Atomic orbital electron populations 1.20574 0.85981 1.04181 1.04031 1.21983 0.95944 0.86780 0.94449 1.20004 0.93318 0.93155 1.28263 1.17190 0.85222 0.83951 0.74282 1.90669 1.18089 1.84727 1.53244 1.45541 1.09631 1.05042 1.75184 1.22389 0.99739 0.78820 0.97741 0.88434 1.24343 1.02333 0.98729 0.97431 1.22594 0.93668 0.91990 0.94762 0.87305 1.58678 1.12615 1.25494 1.40236 1.23429 0.99369 0.94554 0.99371 1.24507 0.97636 0.91580 0.97005 1.77081 0.98351 1.14486 1.25734 1.49112 1.03385 1.07738 1.51358 1.19358 0.95251 0.72387 0.98129 1.21401 1.48035 0.98514 0.91569 0.93042 1.25737 0.93801 0.95913 1.02301 1.69993 1.44775 1.07676 1.33004 0.85342 0.78965 0.77667 0.78469 1.19109 1.19801 1.19827 0.89094 0.91216 0.88348 0.75130 0.89322 0.92047 0.83647 0.83868 0.90050 0.88247 0.75661 0.93238 0.95021 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.33 9.34 71.23 0.67 -2.67 16 2 C 0.14 5.97 7.01 42.14 0.30 6.26 16 3 C -0.33 -11.79 6.13 -20.15 -0.12 -11.91 16 4 C 0.60 19.08 7.81 86.66 0.68 19.76 16 5 O -0.59 -21.89 14.44 -4.04 -0.06 -21.95 16 6 N -0.70 -15.17 5.35 -443.31 -2.37 -17.54 16 7 C 0.12 2.18 4.24 45.51 0.19 2.37 16 8 H 0.10 2.19 7.47 -2.38 -0.02 2.17 16 9 C -0.19 -2.86 7.60 31.12 0.24 -2.62 16 10 C 0.08 1.00 5.00 45.44 0.23 1.22 16 11 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 12 N -0.84 -8.71 9.63 -166.49 -1.60 -10.32 16 13 C -0.13 -1.64 7.61 31.12 0.24 -1.40 16 14 C 0.08 2.60 11.50 85.65 0.99 3.59 16 15 N -0.34 -14.46 12.50 -56.28 -0.70 -15.16 16 16 N -0.34 -15.73 3.56 -336.71 -1.20 -16.93 16 17 C 0.27 13.90 5.78 85.63 0.49 14.39 16 18 C -0.56 -30.84 9.39 25.60 0.24 -30.60 16 19 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 20 C 0.02 1.30 5.46 84.66 0.46 1.76 16 21 N -0.92 -51.40 13.29 21.45 0.28 -51.12 16 22 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 27 H 0.07 2.73 7.71 -2.39 -0.02 2.72 16 28 H 0.10 3.57 6.50 -2.39 -0.02 3.56 16 29 H 0.41 6.50 7.68 -92.71 -0.71 5.79 16 30 H 0.09 1.28 8.06 -2.39 -0.02 1.26 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.35 2.82 9.08 -89.70 -0.81 2.01 16 33 H 0.35 3.00 8.87 -89.69 -0.80 2.20 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.06 8.12 -2.38 -0.02 1.04 16 36 H 0.23 4.61 7.50 -2.91 -0.02 4.59 16 37 H 0.05 2.58 7.64 -2.38 -0.02 2.56 16 38 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -68.03 331.95 -0.26 -68.28 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -1.22 Total: 19.88 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.59 Total: 0.16 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -5.59 Total: -111.07 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -68.03 -0.26 -68.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579526636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.659 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds