Wall clock time and date at job start Tue Mar 31 2020 00:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38049 * 126.29193 * 2 1 4 4 C 1.47435 * 126.41008 * 359.97343 * 3 2 1 5 5 O 1.21595 * 120.00181 * 0.21897 * 4 3 2 6 6 N 1.34776 * 119.99721 * 180.21497 * 4 3 2 7 7 C 1.46499 * 119.99930 * 180.02562 * 6 4 3 8 8 H 1.08992 * 112.84857 * 25.33124 * 7 6 4 9 9 C 1.53779 * 113.61287 * 156.53214 * 7 6 4 10 10 C 1.53789 * 87.08079 * 139.97795 * 9 7 6 11 11 H 1.09002 * 113.60856 * 220.01532 * 10 9 7 12 12 N 1.46896 * 113.61154 * 89.20142 * 10 9 7 13 13 C 1.53783 * 113.61053 * 254.13405 * 7 6 4 14 14 C 1.41282 * 107.17290 * 180.13755 * 3 2 1 15 15 N 1.30449 * 108.02396 * 359.57349 * 14 3 2 16 16 N 1.34254 * 126.29566 * 179.66366 * 2 1 3 17 17 C 1.46508 * 125.75138 * 0.02562 * 16 2 1 18 18 C 1.50698 * 109.46733 * 269.97450 * 17 16 2 19 19 H 1.07993 * 120.00556 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99505 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47319 * 59.99547 * 22 20 18 24 24 H 1.48502 * 109.47150 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46767 * 299.99410 * 22 20 18 26 26 H 1.09001 * 109.47029 * 270.33182 * 1 2 3 27 27 H 1.08995 * 109.47752 * 30.33920 * 1 2 3 28 28 H 1.09006 * 109.47080 * 150.34091 * 1 2 3 29 29 H 0.97002 * 119.99811 * 0.02562 * 6 4 3 30 30 H 1.09001 * 113.61299 * 254.52452 * 9 7 6 31 31 H 1.09000 * 113.61895 * 25.43261 * 9 7 6 32 32 H 1.00900 * 110.99720 * 180.02562 * 12 10 9 33 33 H 1.00905 * 110.99891 * 303.94821 * 12 10 9 34 34 H 1.08997 * 113.61599 * 334.57166 * 13 7 6 35 35 H 1.09007 * 113.61187 * 105.46750 * 13 7 6 36 36 H 1.08002 * 125.99189 * 179.84240 * 14 3 2 37 37 H 1.08998 * 109.47234 * 29.97266 * 17 16 2 38 38 H 1.08996 * 109.47203 * 149.97459 * 17 16 2 39 39 H 0.97000 * 119.99195 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5204 -0.0006 5 8 0.6995 2.7878 0.0030 6 7 2.7998 3.5108 -0.0049 7 6 2.3642 4.9095 -0.0048 8 1 1.3732 5.0442 0.4283 9 6 3.4171 5.8825 0.5515 10 6 3.0022 6.8492 -0.5703 11 1 3.8413 7.3744 -1.0266 12 7 1.9024 7.7480 -0.1955 13 6 2.5441 5.6107 -1.3617 14 6 3.6590 0.6500 -0.0032 15 7 3.6341 -0.6543 0.0042 16 7 2.3017 -1.0820 0.0064 17 6 1.8501 -2.4758 0.0140 18 6 1.6954 -2.9458 1.4374 19 1 1.9121 -2.2738 2.2546 20 6 1.2781 -4.2341 1.6966 21 7 1.0146 -5.0526 0.7014 22 14 1.0856 -4.8165 3.4610 23 1 0.0841 -3.9684 4.1557 24 1 0.6292 -6.2296 3.4688 25 1 2.3914 -4.7148 4.1610 26 1 -0.3633 0.0060 1.0277 27 1 -0.3634 0.8868 -0.5190 28 1 -0.3633 -0.8931 -0.5086 29 1 3.7460 3.2974 -0.0080 30 1 3.1870 6.2497 1.5517 31 1 4.4404 5.5188 0.4581 32 1 1.6623 8.3632 -0.9584 33 1 1.0970 7.2246 0.1136 34 1 3.3282 5.1724 -1.9791 35 1 1.6101 5.7586 -1.9039 36 1 4.5449 1.2677 -0.0065 37 1 0.8914 -2.5499 -0.4993 38 1 2.5847 -3.0985 -0.4965 39 1 0.7214 -5.9590 0.8837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579526637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:18 Heat of formation + Delta-G solvation = 44.913891 kcal Electronic energy + Delta-G solvation = -21135.665373 eV Core-core repulsion = 17886.861484 eV Total energy + Delta-G solvation = -3248.803889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83006 -39.92056 -38.02747 -34.05529 -33.69481 -32.09469 -31.28847 -30.73273 -27.45656 -26.66493 -25.93981 -24.30853 -23.25254 -21.87872 -19.96632 -19.66914 -18.78078 -17.08588 -17.05955 -16.74830 -15.53833 -15.25644 -15.05505 -14.84947 -14.50997 -14.10091 -14.01970 -13.40295 -13.31907 -12.87590 -12.67938 -12.58786 -12.40983 -12.12061 -11.97622 -11.78720 -11.47939 -11.14615 -11.03003 -10.87661 -10.66722 -10.37687 -10.18599 -9.96325 -9.40177 -9.12240 -8.85185 -8.71340 -8.59976 -7.92151 -6.34283 -4.42245 2.17664 2.78414 3.17641 3.19719 3.23653 3.29044 3.58680 3.86843 4.10121 4.23752 4.23819 4.47220 4.69488 4.84147 4.99070 5.08817 5.23458 5.36576 5.42390 5.54864 5.60751 5.70766 5.74409 5.75785 5.89022 6.02328 6.12104 6.41565 6.55400 6.63921 6.78694 6.81236 6.89873 7.07528 7.15188 7.55157 7.74246 7.76467 7.79074 8.36839 8.60404 8.63625 9.24654 10.73938 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.003306 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.086351 B = 8467.975089 C = 8537.143561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.334 4.334 4 C 0.604 3.396 5 O -0.558 6.558 6 N -0.724 5.724 7 C 0.129 3.871 8 H 0.110 0.890 9 C -0.143 4.143 10 C 0.072 3.928 11 H 0.093 0.907 12 N -0.831 5.831 13 C -0.191 4.191 14 C 0.057 3.943 15 N -0.296 5.296 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.541 4.541 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.909 3.091 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.398 0.602 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.344 0.656 33 H 0.344 0.656 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.175 0.825 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 19.436 -3.635 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.028 3.972 3 C -0.350 4.350 4 C 0.395 3.605 5 O -0.437 6.437 6 N -0.375 5.375 7 C 0.023 3.977 8 H 0.128 0.872 9 C -0.182 4.182 10 C -0.041 4.041 11 H 0.111 0.889 12 N -0.360 5.360 13 C -0.232 4.232 14 C -0.130 4.130 15 N -0.116 5.116 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.233 0.767 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.192 0.808 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.331 18.437 -3.110 18.992 hybrid contribution -0.462 -0.400 0.123 0.624 sum 2.868 18.037 -2.986 18.506 Atomic orbital electron populations 1.20563 0.86822 1.03717 1.03936 1.21487 0.94965 0.86557 0.94209 1.19695 0.93139 0.92561 1.29563 1.17366 0.85097 0.84001 0.74045 1.90675 1.16777 1.84498 1.51758 1.45698 1.09590 1.05073 1.77116 1.22389 0.99384 0.79861 0.96035 0.87179 1.23477 0.99381 0.95546 0.99752 1.22339 0.94994 0.91110 0.95619 0.88933 1.58688 1.11963 1.23481 1.41849 1.24355 1.02320 0.98503 0.98030 1.23712 0.96320 0.92636 1.00312 1.77138 0.98634 1.12273 1.23510 1.49373 1.02476 1.08323 1.48902 1.19849 0.96399 0.70904 0.99427 1.21212 1.47577 0.98183 0.90969 0.91707 1.24926 0.94409 0.95944 0.98356 1.69908 1.44426 1.07065 1.31337 0.86372 0.78899 0.77735 0.83476 1.19822 1.20852 1.19891 0.89825 0.88888 0.90881 0.76734 0.90075 0.89116 0.84269 0.84215 0.89372 0.91350 0.80799 0.92559 0.92524 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.56 36.00 0.34 -1.34 16 2 C 0.17 3.39 7.01 -81.60 -0.57 2.81 16 3 C -0.33 -6.12 6.13 -105.06 -0.64 -6.76 16 4 C 0.60 10.00 7.81 -12.52 -0.10 9.90 16 5 O -0.56 -10.58 14.47 5.28 0.08 -10.51 16 6 N -0.72 -8.74 5.35 -54.09 -0.29 -9.03 16 7 C 0.13 1.33 3.87 -67.12 -0.26 1.07 16 8 H 0.11 1.32 7.08 -51.93 -0.37 0.95 16 9 C -0.14 -1.14 7.63 -25.92 -0.20 -1.34 16 10 C 0.07 0.53 5.18 -66.81 -0.35 0.19 16 11 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 12 N -0.83 -5.96 9.64 -3.90 -0.04 -6.00 16 13 C -0.19 -1.64 7.61 -25.83 -0.20 -1.84 16 14 C 0.06 0.99 11.50 -16.98 -0.20 0.80 16 15 N -0.30 -6.37 12.50 30.86 0.39 -5.98 16 16 N -0.31 -7.13 3.56 -57.77 -0.21 -7.33 16 17 C 0.25 6.28 5.97 -5.19 -0.03 6.25 16 18 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 19 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 22 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.62 6.52 -51.93 -0.34 1.28 16 28 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 29 H 0.40 3.86 7.67 -40.82 -0.31 3.55 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 32 H 0.34 1.93 9.08 -39.29 -0.36 1.57 16 33 H 0.34 2.50 8.16 -39.29 -0.32 2.18 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.18 2.14 7.50 -52.49 -0.39 1.74 16 37 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -31.10 329.92 -7.32 -38.42 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.32 Total: 7.06 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.62 Total: -3.51 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.59 Total: -52.26 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.10 -7.32 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579526637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.337 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds