Wall clock time and date at job start Tue Mar 31 2020 00:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38049 * 126.29193 * 2 1 4 4 C 1.47435 * 126.41008 * 359.97343 * 3 2 1 5 5 O 1.21595 * 120.00181 * 0.21897 * 4 3 2 6 6 N 1.34776 * 119.99721 * 180.21497 * 4 3 2 7 7 C 1.46499 * 119.99930 * 180.02562 * 6 4 3 8 8 H 1.08992 * 112.84857 * 25.33124 * 7 6 4 9 9 C 1.53779 * 113.61287 * 156.53214 * 7 6 4 10 10 C 1.53789 * 87.08079 * 139.97795 * 9 7 6 11 11 H 1.09002 * 113.60856 * 220.01532 * 10 9 7 12 12 N 1.46896 * 113.61154 * 89.20142 * 10 9 7 13 13 C 1.53783 * 113.61053 * 254.13405 * 7 6 4 14 14 C 1.41282 * 107.17290 * 180.13755 * 3 2 1 15 15 N 1.30449 * 108.02396 * 359.57349 * 14 3 2 16 16 N 1.34254 * 126.29566 * 179.66366 * 2 1 3 17 17 C 1.46508 * 125.75138 * 0.02562 * 16 2 1 18 18 C 1.50698 * 109.46733 * 269.97450 * 17 16 2 19 19 H 1.07993 * 120.00556 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99505 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47319 * 59.99547 * 22 20 18 24 24 H 1.48502 * 109.47150 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46767 * 299.99410 * 22 20 18 26 26 H 1.09001 * 109.47029 * 270.33182 * 1 2 3 27 27 H 1.08995 * 109.47752 * 30.33920 * 1 2 3 28 28 H 1.09006 * 109.47080 * 150.34091 * 1 2 3 29 29 H 0.97002 * 119.99811 * 0.02562 * 6 4 3 30 30 H 1.09001 * 113.61299 * 254.52452 * 9 7 6 31 31 H 1.09000 * 113.61895 * 25.43261 * 9 7 6 32 32 H 1.00900 * 110.99720 * 180.02562 * 12 10 9 33 33 H 1.00905 * 110.99891 * 303.94821 * 12 10 9 34 34 H 1.08997 * 113.61599 * 334.57166 * 13 7 6 35 35 H 1.09007 * 113.61187 * 105.46750 * 13 7 6 36 36 H 1.08002 * 125.99189 * 179.84240 * 14 3 2 37 37 H 1.08998 * 109.47234 * 29.97266 * 17 16 2 38 38 H 1.08996 * 109.47203 * 149.97459 * 17 16 2 39 39 H 0.97000 * 119.99195 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5204 -0.0006 5 8 0.6995 2.7878 0.0030 6 7 2.7998 3.5108 -0.0049 7 6 2.3642 4.9095 -0.0048 8 1 1.3732 5.0442 0.4283 9 6 3.4171 5.8825 0.5515 10 6 3.0022 6.8492 -0.5703 11 1 3.8413 7.3744 -1.0266 12 7 1.9024 7.7480 -0.1955 13 6 2.5441 5.6107 -1.3617 14 6 3.6590 0.6500 -0.0032 15 7 3.6341 -0.6543 0.0042 16 7 2.3017 -1.0820 0.0064 17 6 1.8501 -2.4758 0.0140 18 6 1.6954 -2.9458 1.4374 19 1 1.9121 -2.2738 2.2546 20 6 1.2781 -4.2341 1.6966 21 7 1.0146 -5.0526 0.7014 22 14 1.0856 -4.8165 3.4610 23 1 0.0841 -3.9684 4.1557 24 1 0.6292 -6.2296 3.4688 25 1 2.3914 -4.7148 4.1610 26 1 -0.3633 0.0060 1.0277 27 1 -0.3634 0.8868 -0.5190 28 1 -0.3633 -0.8931 -0.5086 29 1 3.7460 3.2974 -0.0080 30 1 3.1870 6.2497 1.5517 31 1 4.4404 5.5188 0.4581 32 1 1.6623 8.3632 -0.9584 33 1 1.0970 7.2246 0.1136 34 1 3.3282 5.1724 -1.9791 35 1 1.6101 5.7586 -1.9039 36 1 4.5449 1.2677 -0.0065 37 1 0.8914 -2.5499 -0.4993 38 1 2.5847 -3.0985 -0.4965 39 1 0.7214 -5.9590 0.8837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579526637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:17 Heat of formation + Delta-G solvation = 21.691613 kcal Electronic energy + Delta-G solvation = -21136.672366 eV Core-core repulsion = 17886.861484 eV Total energy + Delta-G solvation = -3249.810883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32640 -40.85174 -39.16453 -35.83683 -34.91378 -33.77365 -32.76327 -31.64784 -29.19204 -28.22513 -26.59820 -25.65635 -24.75838 -23.15578 -21.31817 -20.81022 -19.93735 -18.87433 -18.36841 -17.86150 -16.89820 -16.48192 -16.16646 -16.12467 -15.97636 -15.47542 -15.25378 -14.73765 -14.38664 -14.18525 -14.06658 -13.70430 -13.63386 -13.58389 -13.38135 -13.10404 -12.98331 -12.71704 -12.69413 -12.31022 -11.89127 -11.77118 -11.73272 -11.35849 -10.77549 -10.75903 -10.27913 -10.03221 -9.61510 -9.41316 -8.39025 -6.55689 0.67172 1.32212 1.38000 1.38540 1.47085 1.65064 2.31250 2.42086 2.53626 2.93186 3.52218 3.54994 3.73287 3.76663 3.80542 3.99817 4.10373 4.17856 4.24418 4.49681 4.60396 4.69608 4.78002 4.81469 4.87518 4.93495 5.01649 5.05661 5.11142 5.15537 5.27952 5.47620 5.62271 5.70077 5.73532 6.03279 6.24623 6.53152 6.56955 6.66707 6.84690 7.15474 7.38680 8.68748 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.003306 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.086351 B = 8467.975089 C = 8537.143561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.143 3.857 3 C -0.332 4.332 4 C 0.603 3.397 5 O -0.587 6.587 6 N -0.704 5.704 7 C 0.116 3.884 8 H 0.090 0.910 9 C -0.132 4.132 10 C 0.081 3.919 11 H 0.109 0.891 12 N -0.837 5.837 13 C -0.184 4.184 14 C 0.080 3.920 15 N -0.337 5.337 16 N -0.339 5.339 17 C 0.267 3.733 18 C -0.558 4.558 19 H 0.052 0.948 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.273 1.273 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.413 0.587 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.353 0.647 33 H 0.342 0.658 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.228 0.772 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 21.380 -3.086 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.007 3.993 3 C -0.347 4.347 4 C 0.393 3.607 5 O -0.468 6.468 6 N -0.355 5.355 7 C 0.011 3.989 8 H 0.108 0.892 9 C -0.171 4.171 10 C -0.032 4.032 11 H 0.127 0.873 12 N -0.367 5.367 13 C -0.225 4.225 14 C -0.107 4.107 15 N -0.156 5.156 16 N -0.116 5.116 17 C 0.149 3.851 18 C -0.596 4.596 19 H 0.070 0.930 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.198 1.198 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.250 0.750 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.244 0.756 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.570 20.430 -2.574 21.093 hybrid contribution -0.802 -0.851 -0.091 1.173 sum 3.768 19.579 -2.665 20.116 Atomic orbital electron populations 1.20534 0.85993 1.03940 1.03865 1.21978 0.95920 0.86835 0.94536 1.20005 0.93331 0.93137 1.28261 1.17205 0.85236 0.83978 0.74289 1.90663 1.18121 1.84758 1.53295 1.45568 1.09686 1.05053 1.75145 1.22601 0.99501 0.78939 0.97892 0.89182 1.23480 0.99526 0.94491 0.99593 1.22330 0.95340 0.90712 0.94827 0.87265 1.58715 1.12034 1.23581 1.42357 1.24326 1.02240 0.98892 0.97074 1.24520 0.97634 0.91581 0.96951 1.77091 0.98282 1.14496 1.25765 1.49107 1.03407 1.07747 1.51296 1.19359 0.95261 0.72374 0.98132 1.21373 1.48101 0.98542 0.91558 0.93003 1.25740 0.93761 0.95863 1.02381 1.69992 1.44745 1.07468 1.33266 0.85400 0.78857 0.77698 0.78546 1.19148 1.19705 1.19779 0.89994 0.88090 0.91083 0.75018 0.90600 0.87093 0.83256 0.84441 0.88572 0.92242 0.75569 0.93217 0.95050 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.19 9.56 71.24 0.68 -2.51 16 2 C 0.14 5.93 7.01 42.14 0.30 6.23 16 3 C -0.33 -11.80 6.13 -20.15 -0.12 -11.92 16 4 C 0.60 19.12 7.81 86.67 0.68 19.80 16 5 O -0.59 -21.98 14.47 -4.02 -0.06 -22.04 16 6 N -0.70 -15.22 5.35 -443.31 -2.37 -17.59 16 7 C 0.12 2.14 3.87 45.52 0.18 2.31 16 8 H 0.09 2.08 7.08 -2.39 -0.02 2.07 16 9 C -0.13 -1.70 7.63 31.12 0.24 -1.47 16 10 C 0.08 0.95 5.18 45.50 0.24 1.19 16 11 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 12 N -0.84 -10.33 9.64 -166.25 -1.60 -11.94 16 13 C -0.18 -2.72 7.61 31.18 0.24 -2.49 16 14 C 0.08 2.61 11.50 85.65 0.99 3.60 16 15 N -0.34 -14.44 12.50 -56.28 -0.70 -15.14 16 16 N -0.34 -15.73 3.56 -336.69 -1.20 -16.93 16 17 C 0.27 13.91 5.97 85.63 0.51 14.42 16 18 C -0.56 -30.93 9.39 25.60 0.24 -30.69 16 19 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 20 C 0.02 1.30 5.46 84.65 0.46 1.77 16 21 N -0.92 -51.51 13.29 21.45 0.28 -51.22 16 22 Si 0.97 42.74 29.54 68.60 2.03 44.76 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.10 3.57 6.52 -2.39 -0.02 3.55 16 28 H 0.07 2.62 7.05 -2.38 -0.02 2.60 16 29 H 0.41 6.44 7.67 -92.71 -0.71 5.72 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.01 8.11 -2.39 -0.02 0.99 16 32 H 0.35 3.24 9.08 -89.69 -0.81 2.43 16 33 H 0.34 4.54 8.16 -89.69 -0.73 3.80 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.23 4.59 7.50 -2.91 -0.02 4.57 16 37 H 0.05 2.59 7.02 -2.39 -0.02 2.58 16 38 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -68.28 329.92 -0.16 -68.44 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -1.15 Total: 21.40 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 4.61 Total: 0.24 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -5.59 Total: -112.81 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.28 -0.16 -68.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579526637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.136 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds