Wall clock time and date at job start Tue Mar 31 2020 00:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30832 * 125.96113 * 2 1 4 4 C 1.33251 * 109.82378 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52247 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.91943 * 357.54684 * 5 4 3 7 7 C 1.55157 * 111.00841 * 121.45321 * 5 4 3 8 8 C 1.54325 * 102.94374 * 153.57332 * 7 5 4 9 9 N 1.47015 * 107.27065 * 337.80787 * 8 7 5 10 10 C 1.34778 * 125.64845 * 178.98781 * 9 8 7 11 11 O 1.21280 * 120.00070 * 179.97438 * 10 9 8 12 12 C 1.50696 * 119.99911 * 359.97438 * 10 9 8 13 13 C 1.52997 * 109.47331 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47421 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00088 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00235 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99833 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99945 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47259 * 60.00351 * 18 16 14 20 20 H 1.48506 * 109.47077 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46990 * 300.00240 * 18 16 14 22 22 C 1.47425 * 108.70882 * 358.94051 * 9 8 7 23 23 N 1.30705 * 108.94767 * 0.25909 * 4 3 2 24 24 N 1.34430 * 125.96086 * 179.97438 * 2 1 3 25 25 H 0.97002 * 126.82023 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47183 * 89.99813 * 1 2 3 27 27 H 1.08999 * 109.47847 * 210.00256 * 1 2 3 28 28 H 1.09003 * 109.47515 * 330.00305 * 1 2 3 29 29 H 1.08996 * 110.71539 * 271.93643 * 7 5 4 30 30 H 1.08993 * 110.71794 * 35.20668 * 7 5 4 31 31 H 1.09000 * 109.88274 * 97.22627 * 8 7 5 32 32 H 1.08998 * 109.88226 * 218.38672 * 8 7 5 33 33 H 1.09005 * 109.47187 * 299.99947 * 12 10 9 34 34 H 1.09004 * 109.47639 * 60.00063 * 12 10 9 35 35 H 1.08998 * 109.47224 * 300.00057 * 13 12 10 36 36 H 1.09000 * 109.47427 * 60.00103 * 13 12 10 37 37 H 0.97003 * 119.99999 * 179.97438 * 17 16 14 38 38 H 1.08999 * 110.36633 * 265.29871 * 22 9 8 39 39 H 1.08996 * 110.37033 * 142.96251 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6886 0.0006 5 6 4.7372 1.6234 0.0013 6 1 4.4115 2.6627 -0.0423 7 6 5.6417 1.3755 1.2373 8 6 7.0277 1.8501 0.7521 9 7 7.0165 1.8003 -0.7171 10 6 8.0365 2.1562 -1.5230 11 8 7.9156 2.0732 -2.7269 12 6 9.3273 2.6571 -0.9281 13 6 10.3112 2.9902 -2.0514 14 6 11.6018 3.4917 -1.4565 15 1 11.7097 3.5652 -0.3844 16 6 12.6453 3.8559 -2.2809 17 7 12.5142 3.7660 -3.5863 18 14 14.2453 4.4769 -1.5434 19 1 14.8280 3.4270 -0.6696 20 1 15.2002 4.8003 -2.6337 21 1 13.9793 5.6976 -0.7406 22 6 5.7050 1.2957 -1.1631 23 7 3.6193 -0.6169 -0.0047 24 7 2.2964 -1.0881 0.0005 25 1 2.0092 -2.0147 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3635 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 5.3058 1.9705 2.0865 30 1 5.6643 0.3160 1.4923 31 1 7.2080 2.8715 1.0871 32 1 7.8026 1.1886 1.1396 33 1 9.1322 3.5532 -0.3389 34 1 9.7550 1.8865 -0.2866 35 1 10.5064 2.0944 -2.6409 36 1 9.8834 3.7610 -2.6925 37 1 13.2482 4.0225 -4.1663 38 1 5.7490 0.2192 -1.3282 39 1 5.3910 1.8074 -2.0728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626659310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:26 Heat of formation + Delta-G solvation = 38.035654 kcal Electronic energy + Delta-G solvation = -20774.869157 eV Core-core repulsion = 17525.767005 eV Total energy + Delta-G solvation = -3249.102152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -42.50690 -39.64083 -37.28435 -33.74826 -33.40950 -32.71454 -31.47840 -30.64116 -29.23932 -28.13062 -25.93148 -23.98252 -22.63918 -21.40993 -21.11213 -19.98459 -18.61681 -18.32982 -16.93163 -16.19335 -16.02592 -15.78286 -14.98122 -14.55497 -14.43748 -14.23209 -13.78166 -13.51519 -13.44180 -13.19617 -12.91373 -12.45195 -12.22115 -12.09889 -11.96635 -11.74531 -11.53929 -11.07535 -10.98457 -10.86777 -10.58104 -10.34550 -10.32119 -9.88949 -9.74646 -9.60554 -9.13925 -8.97443 -8.35714 -8.26491 -5.91567 -3.95876 1.23467 2.26838 2.49816 3.21782 3.28985 3.37702 3.42139 3.44090 3.66910 4.17579 4.37714 4.45729 4.52319 4.59383 4.82196 4.89701 5.05069 5.21659 5.27783 5.33058 5.43110 5.46752 5.61361 5.71228 5.88601 5.90136 5.92667 6.00843 6.11766 6.28870 6.30866 6.57531 6.68465 6.94723 7.77219 7.78999 7.90333 7.91773 8.12318 8.43199 8.79738 9.12469 9.67216 11.19426 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.055453 B = 0.002749 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.812002 B =10183.443175 C =10429.758113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.281 3.719 3 N -0.536 5.536 4 C 0.246 3.754 5 C -0.012 4.012 6 H 0.113 0.887 7 C -0.119 4.119 8 C 0.105 3.895 9 N -0.630 5.630 10 C 0.527 3.473 11 O -0.532 6.532 12 C -0.123 4.123 13 C 0.036 3.964 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.119 3.881 23 N -0.306 5.306 24 N -0.484 5.484 25 H 0.440 0.560 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.288 -9.116 12.272 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 N -0.265 5.265 4 C -0.037 4.037 5 C -0.034 4.034 6 H 0.131 0.869 7 C -0.158 4.158 8 C -0.018 4.018 9 N -0.368 5.368 10 C 0.318 3.682 11 O -0.407 6.407 12 C -0.163 4.163 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.006 4.006 23 N -0.134 5.134 24 N -0.202 5.202 25 H 0.286 0.714 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.584 -9.119 11.364 28.577 hybrid contribution 0.424 -0.416 0.413 0.723 sum -24.161 -9.535 11.776 28.519 Atomic orbital electron populations 1.20401 0.83570 1.05024 1.04685 1.24425 0.96668 0.82863 0.95778 1.70376 1.01348 1.29529 1.25286 1.23784 0.92683 0.89843 0.97361 1.20703 0.88299 0.97375 0.97035 0.86867 1.22728 0.93420 1.02912 0.96747 1.21974 0.97159 1.01885 0.80830 1.48692 1.14046 1.67306 1.06729 1.21342 0.84510 0.75878 0.86440 1.90677 1.81857 1.53378 1.14801 1.21850 0.91539 1.00779 1.02153 1.18914 0.91519 0.97754 0.91941 1.21182 0.98435 1.43966 0.92890 0.92637 1.25029 0.98748 0.95827 0.94818 1.69990 1.32327 1.47914 1.02632 0.86648 0.83328 0.79275 0.78635 1.20266 1.21321 1.20246 1.22071 0.82330 0.99782 0.96377 1.78029 0.96408 1.12326 1.26684 1.48016 1.04352 1.10064 1.57791 0.71447 0.88890 0.89861 0.88265 0.89499 0.89973 0.90818 0.90880 0.90205 0.90266 0.95831 0.95789 0.92916 0.91175 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.28 2.30 8.24 -155.70 -1.28 1.01 16 3 N -0.54 -6.23 11.19 -8.16 -0.09 -6.32 16 4 C 0.25 2.99 6.83 -156.85 -1.07 1.92 16 5 C -0.01 -0.14 3.57 -89.62 -0.32 -0.46 16 6 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 7 C -0.12 -1.18 6.41 -24.90 -0.16 -1.34 16 8 C 0.10 1.24 6.49 -3.07 -0.02 1.22 16 9 N -0.63 -10.14 3.33 -170.52 -0.57 -10.71 16 10 C 0.53 10.99 7.85 -10.99 -0.09 10.90 16 11 O -0.53 -13.40 16.24 5.56 0.09 -13.31 16 12 C -0.12 -2.63 4.83 -27.89 -0.13 -2.76 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.21 9.11 -34.44 -0.31 -15.53 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.90 13.29 55.43 0.74 -27.17 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.12 1.73 6.36 -2.52 -0.02 1.71 16 23 N -0.31 -3.63 12.43 32.42 0.40 -3.23 16 24 N -0.48 -3.92 7.45 32.62 0.24 -3.68 16 25 H 0.44 1.89 8.96 -182.34 -1.63 0.25 16 26 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.83 7.95 -51.93 -0.41 0.42 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 38 H 0.07 1.06 7.81 -51.93 -0.41 0.66 16 39 H 0.08 1.26 8.04 -51.93 -0.42 0.85 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -38.10 332.98 -9.49 -47.59 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -7.06 Total: -4.44 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.24 Total: -0.71 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.72 Total: -51.10 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -38.10 -9.49 -47.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626659310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.621 kcal (2) G-P(sol) polarization free energy of solvation -38.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds