Wall clock time and date at job start Tue Mar 31 2020 00:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30832 * 125.96113 * 2 1 4 4 C 1.33251 * 109.82378 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52247 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.91943 * 357.54684 * 5 4 3 7 7 C 1.55157 * 111.00841 * 121.45321 * 5 4 3 8 8 C 1.54325 * 102.94374 * 153.57332 * 7 5 4 9 9 N 1.47015 * 107.27065 * 337.80787 * 8 7 5 10 10 C 1.34778 * 125.64845 * 178.98781 * 9 8 7 11 11 O 1.21280 * 120.00070 * 179.97438 * 10 9 8 12 12 C 1.50696 * 119.99911 * 359.97438 * 10 9 8 13 13 C 1.52997 * 109.47331 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47421 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00088 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00235 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99833 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99945 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47259 * 60.00351 * 18 16 14 20 20 H 1.48506 * 109.47077 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46990 * 300.00240 * 18 16 14 22 22 C 1.47425 * 108.70882 * 358.94051 * 9 8 7 23 23 N 1.30705 * 108.94767 * 0.25909 * 4 3 2 24 24 N 1.34430 * 125.96086 * 179.97438 * 2 1 3 25 25 H 0.97002 * 126.82023 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47183 * 89.99813 * 1 2 3 27 27 H 1.08999 * 109.47847 * 210.00256 * 1 2 3 28 28 H 1.09003 * 109.47515 * 330.00305 * 1 2 3 29 29 H 1.08996 * 110.71539 * 271.93643 * 7 5 4 30 30 H 1.08993 * 110.71794 * 35.20668 * 7 5 4 31 31 H 1.09000 * 109.88274 * 97.22627 * 8 7 5 32 32 H 1.08998 * 109.88226 * 218.38672 * 8 7 5 33 33 H 1.09005 * 109.47187 * 299.99947 * 12 10 9 34 34 H 1.09004 * 109.47639 * 60.00063 * 12 10 9 35 35 H 1.08998 * 109.47224 * 300.00057 * 13 12 10 36 36 H 1.09000 * 109.47427 * 60.00103 * 13 12 10 37 37 H 0.97003 * 119.99999 * 179.97438 * 17 16 14 38 38 H 1.08999 * 110.36633 * 265.29871 * 22 9 8 39 39 H 1.08996 * 110.37033 * 142.96251 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6886 0.0006 5 6 4.7372 1.6234 0.0013 6 1 4.4115 2.6627 -0.0423 7 6 5.6417 1.3755 1.2373 8 6 7.0277 1.8501 0.7521 9 7 7.0165 1.8003 -0.7171 10 6 8.0365 2.1562 -1.5230 11 8 7.9156 2.0732 -2.7269 12 6 9.3273 2.6571 -0.9281 13 6 10.3112 2.9902 -2.0514 14 6 11.6018 3.4917 -1.4565 15 1 11.7097 3.5652 -0.3844 16 6 12.6453 3.8559 -2.2809 17 7 12.5142 3.7660 -3.5863 18 14 14.2453 4.4769 -1.5434 19 1 14.8280 3.4270 -0.6696 20 1 15.2002 4.8003 -2.6337 21 1 13.9793 5.6976 -0.7406 22 6 5.7050 1.2957 -1.1631 23 7 3.6193 -0.6169 -0.0047 24 7 2.2964 -1.0881 0.0005 25 1 2.0092 -2.0147 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3635 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 5.3058 1.9705 2.0865 30 1 5.6643 0.3160 1.4923 31 1 7.2080 2.8715 1.0871 32 1 7.8026 1.1886 1.1396 33 1 9.1322 3.5532 -0.3389 34 1 9.7550 1.8865 -0.2866 35 1 10.5064 2.0944 -2.6409 36 1 9.8834 3.7610 -2.6925 37 1 13.2482 4.0225 -4.1663 38 1 5.7490 0.2192 -1.3282 39 1 5.3910 1.8074 -2.0728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626659310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:22 Heat of formation + Delta-G solvation = 10.902488 kcal Electronic energy + Delta-G solvation = -20776.045740 eV Core-core repulsion = 17525.767005 eV Total energy + Delta-G solvation = -3250.278734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -43.24354 -41.05083 -38.67002 -35.57539 -34.64343 -33.39185 -33.10708 -32.06755 -30.22825 -28.80359 -27.79774 -25.43468 -23.61480 -23.06407 -22.00389 -20.90228 -20.07066 -19.05173 -18.81184 -17.65182 -17.33326 -16.72299 -16.52089 -16.30436 -15.75345 -15.40557 -14.62223 -14.51785 -14.43444 -14.16727 -13.88323 -13.80736 -13.67216 -13.46012 -13.17421 -12.83719 -12.76568 -12.60742 -12.55272 -12.45196 -11.96272 -11.79841 -11.62285 -11.31719 -11.12225 -11.10449 -10.80587 -10.54974 -10.47688 -9.69768 -8.16637 -6.31097 0.52953 1.43013 1.48227 1.55770 1.61943 1.68487 1.71680 1.96569 2.44508 2.94115 3.16081 3.38085 3.45669 3.77212 3.78415 3.99986 4.13818 4.24017 4.30724 4.48473 4.52663 4.57348 4.70935 4.71628 4.78104 4.85056 4.95995 5.05201 5.06260 5.14923 5.21778 5.30501 5.35285 5.50827 5.62614 5.85510 6.17864 6.18731 6.46012 6.86936 7.03955 7.20147 7.39048 8.96103 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.055453 B = 0.002749 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.812002 B =10183.443175 C =10429.758113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.288 3.712 3 N -0.571 5.571 4 C 0.234 3.766 5 C -0.003 4.003 6 H 0.118 0.882 7 C -0.104 4.104 8 C 0.095 3.905 9 N -0.621 5.621 10 C 0.524 3.476 11 O -0.592 6.592 12 C -0.109 4.109 13 C 0.042 3.958 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.118 3.882 23 N -0.336 5.336 24 N -0.475 5.475 25 H 0.456 0.544 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.104 0.896 35 H -0.020 1.020 36 H -0.018 1.018 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.249 -9.262 15.652 31.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 N -0.301 5.301 4 C -0.049 4.049 5 C -0.025 4.025 6 H 0.136 0.864 7 C -0.143 4.143 8 C -0.027 4.027 9 N -0.356 5.356 10 C 0.315 3.685 11 O -0.472 6.472 12 C -0.148 4.148 13 C 0.004 3.996 14 C -0.580 4.580 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.185 1.185 22 C -0.006 4.006 23 N -0.165 5.165 24 N -0.195 5.195 25 H 0.305 0.695 26 H 0.124 0.876 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.122 0.878 35 H -0.001 1.001 36 H 0.000 1.000 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.602 -9.304 14.823 31.012 hybrid contribution 0.564 -0.455 -0.656 0.977 sum -25.038 -9.759 14.168 30.379 Atomic orbital electron populations 1.20660 0.79993 1.06736 1.06005 1.25278 0.98302 0.81942 0.93405 1.70361 1.01433 1.31316 1.27015 1.23765 0.93089 0.89984 0.98057 1.20580 0.87971 0.97673 0.96227 0.86391 1.22701 0.91499 1.03436 0.96639 1.22373 0.98955 1.03684 0.77644 1.48577 1.13304 1.65063 1.08627 1.21186 0.85429 0.75940 0.85903 1.90652 1.82989 1.56263 1.17315 1.21597 0.90471 1.02749 1.00022 1.18704 0.93308 0.94481 0.93098 1.21673 0.98737 1.43548 0.94066 0.90370 1.26183 1.03425 0.95893 0.95123 1.70184 1.33813 1.49242 1.04661 0.85335 0.77566 0.79297 0.77799 1.18620 1.21420 1.18527 1.22086 0.82398 0.98885 0.97211 1.77921 0.98674 1.12388 1.27554 1.47954 1.03232 1.11109 1.57183 0.69533 0.87556 0.86744 0.87928 0.86532 0.89986 0.88783 0.89507 0.87520 0.87822 1.00149 0.99974 0.92864 0.91955 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 71.23 0.75 0.49 16 2 C 0.29 4.18 8.24 138.22 1.14 5.32 16 3 N -0.57 -12.63 11.19 -179.73 -2.01 -14.64 16 4 C 0.23 5.51 6.83 138.63 0.95 6.46 16 5 C 0.00 -0.06 3.57 -10.15 -0.04 -0.10 16 6 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 7 C -0.10 -1.80 6.41 31.78 0.20 -1.59 16 8 C 0.09 2.00 6.49 86.73 0.56 2.56 16 9 N -0.62 -19.83 3.33 -811.80 -2.70 -22.53 16 10 C 0.52 22.43 7.85 87.66 0.69 23.12 16 11 O -0.59 -31.74 16.24 -3.03 -0.05 -31.79 16 12 C -0.11 -4.62 4.83 29.85 0.14 -4.47 16 13 C 0.04 2.41 4.26 29.85 0.13 2.54 16 14 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 15 H 0.08 4.09 7.74 -2.91 -0.02 4.06 16 16 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 17 N -0.94 -60.85 13.29 21.45 0.28 -60.56 16 18 Si 0.98 44.90 29.54 68.60 2.03 46.93 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 22 C 0.12 3.52 6.36 86.86 0.55 4.08 16 23 N -0.34 -7.69 12.43 -51.34 -0.64 -8.33 16 24 N -0.47 -6.94 7.45 -50.71 -0.38 -7.31 16 25 H 0.46 3.04 8.96 -213.10 -1.91 1.13 16 26 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.47 7.95 -2.39 -0.02 1.45 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 3.94 8.14 -2.38 -0.02 3.92 16 34 H 0.10 3.88 8.14 -2.38 -0.02 3.86 16 35 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 36 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 37 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 38 H 0.06 1.96 7.81 -2.39 -0.02 1.94 16 39 H 0.06 1.99 8.04 -2.39 -0.02 1.97 16 Total: -1.00 -87.94 332.98 1.45 -86.48 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -0.85 Total: 4.70 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.77 Total: 7.07 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -5.44 Total: -113.38 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.05 Total: -31.79 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -87.94 1.45 -86.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626659310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.385 kcal (2) G-P(sol) polarization free energy of solvation -87.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds