Wall clock time and date at job start Mon Mar 30 2020 23:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 125.96092 * 2 1 4 4 C 1.33241 * 109.83045 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.52711 * 179.97438 * 4 3 2 6 6 C 1.53496 * 114.20605 * 119.99836 * 5 4 3 7 7 N 1.47065 * 87.98588 * 139.65322 * 6 5 4 8 8 C 1.34779 * 136.05802 * 152.84008 * 7 6 5 9 9 O 1.21282 * 119.99927 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00033 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.46866 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00344 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00355 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46889 * 89.99924 * 17 15 13 19 19 H 1.48498 * 109.47131 * 210.00227 * 17 15 13 20 20 H 1.48500 * 109.47362 * 330.00383 * 17 15 13 21 21 C 1.47059 * 87.88483 * 333.10350 * 7 6 5 22 22 N 1.30708 * 108.94352 * 0.25862 * 4 3 2 23 23 N 1.34426 * 125.96181 * 179.97438 * 2 1 3 24 24 H 0.97000 * 126.82439 * 0.03298 * 23 2 1 25 25 H 1.09007 * 109.46820 * 90.00230 * 1 2 3 26 26 H 1.08998 * 109.47340 * 210.00258 * 1 2 3 27 27 H 1.09007 * 109.47406 * 330.00878 * 1 2 3 28 28 H 1.08995 * 113.28231 * 346.93694 * 5 4 3 29 29 H 1.09004 * 113.46501 * 24.87468 * 6 5 4 30 30 H 1.09001 * 113.52293 * 254.44724 * 6 5 4 31 31 H 1.08993 * 109.47512 * 60.00410 * 10 8 7 32 32 H 1.09000 * 109.47247 * 300.00119 * 10 8 7 33 33 H 1.09000 * 109.47050 * 299.99952 * 11 10 8 34 34 H 1.09001 * 109.46801 * 60.00064 * 11 10 8 35 35 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 36 36 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 37 37 H 0.96991 * 119.99886 * 179.97438 * 16 15 13 38 38 H 1.09003 * 113.46963 * 141.68116 * 21 7 6 39 39 H 1.09005 * 113.46819 * 272.11593 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.6648 1.4660 1.2130 7 7 6.8038 1.6383 0.2988 8 6 8.0690 2.0917 0.3995 9 8 8.4892 2.4846 1.4672 10 6 8.9616 2.1105 -0.8146 11 6 10.3342 2.6663 -0.4298 12 6 11.2406 2.6847 -1.6623 13 6 12.5924 3.2327 -1.2836 14 1 12.7858 3.5370 -0.2656 15 6 13.5823 3.3457 -2.2367 16 7 14.7621 3.8234 -1.9061 17 14 13.2479 2.8187 -3.9974 18 1 12.7192 3.9731 -4.7676 19 1 14.5098 2.3443 -4.6202 20 1 12.2489 1.7200 -4.0042 21 6 5.9527 1.1043 -0.7750 22 7 3.6194 -0.6167 -0.0047 23 7 2.2964 -1.0881 0.0005 24 1 2.0094 -2.0146 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5137 28 1 4.4701 2.6557 -0.2269 29 1 5.6194 0.4766 1.6683 30 1 5.5679 2.2703 1.9423 31 1 8.5161 2.7417 -1.5834 32 1 9.0750 1.0964 -1.1979 33 1 10.2211 3.6803 -0.0463 34 1 10.7795 2.0346 0.3388 35 1 11.3536 1.6705 -2.0455 36 1 10.7955 3.3161 -2.4313 37 1 15.4585 3.9025 -2.5766 38 1 6.0995 1.6021 -1.7335 39 1 5.9848 0.0176 -0.8546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645135145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:49 Heat of formation + Delta-G solvation = 75.547961 kcal Electronic energy + Delta-G solvation = -20352.139269 eV Core-core repulsion = 17104.663773 eV Total energy + Delta-G solvation = -3247.475496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -42.66896 -40.36503 -37.96301 -34.25153 -33.58174 -32.83663 -32.05679 -30.33228 -28.60391 -27.88359 -26.23391 -24.65990 -23.01908 -21.53659 -20.36956 -19.93315 -18.93966 -18.36284 -16.88574 -16.60080 -16.32146 -16.20674 -15.40478 -14.98364 -14.78376 -14.12022 -13.66783 -13.64273 -13.38913 -13.12605 -12.88127 -12.84421 -12.57754 -12.34846 -12.22283 -11.91545 -11.56401 -11.37315 -10.92411 -10.74834 -10.48299 -10.42577 -9.97179 -9.86715 -9.80277 -9.65675 -9.40518 -9.09507 -8.76381 -8.47401 -5.97071 -3.94614 1.09240 2.12838 2.32829 2.73239 2.86206 3.34587 3.41479 3.44834 3.50413 4.04885 4.15227 4.28757 4.48920 4.50530 4.71884 4.80288 4.82886 5.13444 5.19137 5.21957 5.27079 5.36200 5.43425 5.56702 5.63435 5.74075 5.78383 5.84168 5.94151 6.16527 6.55696 6.60802 6.73874 6.96435 7.41458 7.50054 7.62800 7.71779 7.86576 8.35430 8.63204 9.09874 9.64990 11.16620 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039100 B = 0.002620 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.940806 B =10683.977048 C =11152.451988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.284 3.716 3 N -0.534 5.534 4 C 0.245 3.755 5 C -0.039 4.039 6 C 0.119 3.881 7 N -0.653 5.653 8 C 0.546 3.454 9 O -0.530 6.530 10 C -0.134 4.134 11 C -0.088 4.088 12 C -0.014 4.014 13 C -0.518 4.518 14 H 0.073 0.927 15 C 0.063 3.937 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.115 3.885 22 N -0.307 5.307 23 N -0.482 5.482 24 H 0.441 0.559 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.306 -11.187 1.244 35.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 N -0.264 5.264 4 C -0.038 4.038 5 C -0.060 4.060 6 C -0.005 4.005 7 N -0.391 5.391 8 C 0.337 3.663 9 O -0.405 6.405 10 C -0.173 4.173 11 C -0.126 4.126 12 C -0.052 4.052 13 C -0.556 4.556 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.009 4.009 22 N -0.136 5.136 23 N -0.200 5.200 24 H 0.287 0.713 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -32.049 -10.858 1.774 33.885 hybrid contribution -0.525 -1.045 -1.010 1.545 sum -32.574 -11.903 0.764 34.689 Atomic orbital electron populations 1.20421 0.83481 1.05155 1.04717 1.24447 0.96712 0.82778 0.95547 1.70366 1.01289 1.29522 1.25174 1.23681 0.92669 0.89753 0.97714 1.21325 0.87044 0.98143 0.99523 1.22871 0.81540 1.02618 0.93514 1.49651 1.11447 1.64709 1.13284 1.20821 0.78591 0.75481 0.91372 1.90712 1.72255 1.47060 1.30449 1.21830 0.96942 1.03582 0.94975 1.21297 0.90618 1.00924 0.99783 1.19607 0.95502 0.96510 0.93541 1.21166 0.94763 1.41702 0.97933 0.90912 1.25057 0.94992 0.94818 0.98848 1.69923 1.03689 1.46481 1.34298 0.86757 0.77670 0.79462 0.85236 1.20346 1.21479 1.19041 1.22934 0.84701 1.00270 0.93021 1.78000 0.96677 1.12165 1.26746 1.48008 1.04235 1.10146 1.57660 0.71327 0.88839 0.89788 0.88190 0.84920 0.89683 0.89669 0.89305 0.89377 0.91984 0.92043 0.96653 0.97051 0.92824 0.89410 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.15 10.51 36.01 0.38 0.23 16 2 C 0.28 1.87 8.24 -155.69 -1.28 0.59 16 3 N -0.53 -5.26 11.19 -8.16 -0.09 -5.35 16 4 C 0.24 2.47 7.30 -156.86 -1.14 1.32 16 5 C -0.04 -0.36 4.62 -91.40 -0.42 -0.79 16 6 C 0.12 1.32 8.19 -8.52 -0.07 1.25 16 7 N -0.65 -8.63 3.69 -185.42 -0.68 -9.31 16 8 C 0.55 9.32 8.08 -10.99 -0.09 9.23 16 9 O -0.53 -11.23 16.76 5.56 0.09 -11.13 16 10 C -0.13 -2.22 5.53 -27.88 -0.15 -2.37 16 11 C -0.09 -1.90 4.44 -26.73 -0.12 -2.02 16 12 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 13 C -0.52 -15.39 9.66 -34.44 -0.33 -15.72 16 14 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.90 -28.72 13.96 55.43 0.77 -27.95 16 17 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 21 C 0.12 1.13 7.96 -8.66 -0.07 1.06 16 22 N -0.31 -3.01 12.30 32.42 0.40 -2.61 16 23 N -0.48 -3.10 7.45 32.62 0.24 -2.86 16 24 H 0.44 1.22 8.96 -182.33 -1.63 -0.41 16 25 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 26 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 27 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.40 8.10 -51.93 -0.42 0.98 16 34 H 0.06 1.40 8.10 -51.93 -0.42 0.97 16 35 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -38.24 334.77 -9.44 -47.68 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -7.03 Total: -5.06 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -3.51 Total: -5.88 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.64 Total: -48.08 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -38.24 -9.44 -47.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645135145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.226 kcal (2) G-P(sol) polarization free energy of solvation -38.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds