Wall clock time and date at job start Mon Mar 30 2020 23:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 125.96092 * 2 1 4 4 C 1.33241 * 109.83045 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.52711 * 179.97438 * 4 3 2 6 6 C 1.53496 * 114.20605 * 119.99836 * 5 4 3 7 7 N 1.47065 * 87.98588 * 139.65322 * 6 5 4 8 8 C 1.34779 * 136.05802 * 152.84008 * 7 6 5 9 9 O 1.21282 * 119.99927 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00033 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.46866 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00344 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00355 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46889 * 89.99924 * 17 15 13 19 19 H 1.48498 * 109.47131 * 210.00227 * 17 15 13 20 20 H 1.48500 * 109.47362 * 330.00383 * 17 15 13 21 21 C 1.47059 * 87.88483 * 333.10350 * 7 6 5 22 22 N 1.30708 * 108.94352 * 0.25862 * 4 3 2 23 23 N 1.34426 * 125.96181 * 179.97438 * 2 1 3 24 24 H 0.97000 * 126.82439 * 0.03298 * 23 2 1 25 25 H 1.09007 * 109.46820 * 90.00230 * 1 2 3 26 26 H 1.08998 * 109.47340 * 210.00258 * 1 2 3 27 27 H 1.09007 * 109.47406 * 330.00878 * 1 2 3 28 28 H 1.08995 * 113.28231 * 346.93694 * 5 4 3 29 29 H 1.09004 * 113.46501 * 24.87468 * 6 5 4 30 30 H 1.09001 * 113.52293 * 254.44724 * 6 5 4 31 31 H 1.08993 * 109.47512 * 60.00410 * 10 8 7 32 32 H 1.09000 * 109.47247 * 300.00119 * 10 8 7 33 33 H 1.09000 * 109.47050 * 299.99952 * 11 10 8 34 34 H 1.09001 * 109.46801 * 60.00064 * 11 10 8 35 35 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 36 36 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 37 37 H 0.96991 * 119.99886 * 179.97438 * 16 15 13 38 38 H 1.09003 * 113.46963 * 141.68116 * 21 7 6 39 39 H 1.09005 * 113.46819 * 272.11593 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.6648 1.4660 1.2130 7 7 6.8038 1.6383 0.2988 8 6 8.0690 2.0917 0.3995 9 8 8.4892 2.4846 1.4672 10 6 8.9616 2.1105 -0.8146 11 6 10.3342 2.6663 -0.4298 12 6 11.2406 2.6847 -1.6623 13 6 12.5924 3.2327 -1.2836 14 1 12.7858 3.5370 -0.2656 15 6 13.5823 3.3457 -2.2367 16 7 14.7621 3.8234 -1.9061 17 14 13.2479 2.8187 -3.9974 18 1 12.7192 3.9731 -4.7676 19 1 14.5098 2.3443 -4.6202 20 1 12.2489 1.7200 -4.0042 21 6 5.9527 1.1043 -0.7750 22 7 3.6194 -0.6167 -0.0047 23 7 2.2964 -1.0881 0.0005 24 1 2.0094 -2.0146 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5137 28 1 4.4701 2.6557 -0.2269 29 1 5.6194 0.4766 1.6683 30 1 5.5679 2.2703 1.9423 31 1 8.5161 2.7417 -1.5834 32 1 9.0750 1.0964 -1.1979 33 1 10.2211 3.6803 -0.0463 34 1 10.7795 2.0346 0.3388 35 1 11.3536 1.6705 -2.0455 36 1 10.7955 3.3161 -2.4313 37 1 15.4585 3.9025 -2.5766 38 1 6.0995 1.6021 -1.7335 39 1 5.9848 0.0176 -0.8546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645135145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:46 Heat of formation + Delta-G solvation = 48.053860 kcal Electronic energy + Delta-G solvation = -20353.331503 eV Core-core repulsion = 17104.663773 eV Total energy + Delta-G solvation = -3248.667730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -43.25975 -41.39820 -39.20062 -36.13534 -34.23292 -34.07256 -33.36473 -31.47634 -29.85736 -28.69240 -27.15165 -25.94684 -24.44735 -22.16916 -21.84045 -21.01651 -19.97465 -19.00719 -18.82782 -18.00255 -17.22420 -16.99257 -16.56490 -16.23653 -16.10916 -15.32655 -14.88201 -14.79594 -14.36595 -14.07716 -13.80505 -13.75447 -13.59768 -13.53765 -13.29974 -13.04008 -12.75046 -12.69326 -12.49533 -12.12908 -11.79443 -11.73634 -11.50141 -11.32802 -11.11072 -11.05062 -10.86744 -10.74172 -10.45845 -9.84458 -8.26815 -6.32468 0.53599 1.39147 1.42878 1.54241 1.55033 1.61212 1.70766 1.81247 2.39998 2.96688 3.08005 3.31205 3.40539 3.65612 3.84537 3.90912 4.10974 4.20364 4.25930 4.39036 4.48863 4.53252 4.63493 4.73652 4.74738 4.84467 4.89753 4.98671 5.04047 5.05942 5.07980 5.23148 5.31854 5.54708 5.59822 5.68361 6.20141 6.31347 6.59617 6.75942 7.05981 7.08895 7.31630 8.90796 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039100 B = 0.002620 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.940806 B =10683.977048 C =11152.451988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.289 3.711 3 N -0.569 5.569 4 C 0.234 3.766 5 C -0.023 4.023 6 C 0.115 3.885 7 N -0.652 5.652 8 C 0.543 3.457 9 O -0.587 6.587 10 C -0.122 4.122 11 C -0.081 4.081 12 C -0.008 4.008 13 C -0.540 4.540 14 H 0.019 0.981 15 C -0.005 4.005 16 N -0.956 5.956 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.236 1.236 21 C 0.119 3.881 22 N -0.332 5.332 23 N -0.473 5.473 24 H 0.456 0.544 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.141 0.859 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.030 0.970 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.111 0.889 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.711 -12.971 -1.533 38.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.012 3.988 3 N -0.300 5.300 4 C -0.049 4.049 5 C -0.045 4.045 6 C -0.009 4.009 7 N -0.387 5.387 8 C 0.335 3.665 9 O -0.467 6.467 10 C -0.161 4.161 11 C -0.120 4.120 12 C -0.046 4.046 13 C -0.578 4.578 14 H 0.038 0.962 15 C -0.200 4.200 16 N -0.597 5.597 17 Si 0.785 3.215 18 H -0.188 1.188 19 H -0.212 1.212 20 H -0.159 1.159 21 C -0.004 4.004 22 N -0.162 5.162 23 N -0.193 5.193 24 H 0.305 0.695 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.118 0.882 28 H 0.158 0.842 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -35.536 -12.692 -1.011 37.748 hybrid contribution 0.450 -0.514 -0.019 0.684 sum -35.085 -13.206 -1.030 37.502 Atomic orbital electron populations 1.20658 0.80213 1.06534 1.06114 1.25228 0.98231 0.81962 0.93411 1.70351 1.01521 1.31257 1.26838 1.23654 0.92966 0.89886 0.98361 1.21144 0.86814 0.98607 0.97898 1.23010 0.81196 1.02561 0.94178 1.49586 1.10578 1.63102 1.15452 1.20804 0.79702 0.75340 0.90629 1.90692 1.73764 1.49933 1.32269 1.21664 0.93822 1.05230 0.95413 1.21069 0.93347 0.99576 0.97961 1.19540 0.93010 0.97001 0.95016 1.21546 0.97996 1.42287 0.95929 0.96242 1.26213 0.94335 0.94566 1.04934 1.70106 1.05145 1.47994 1.36477 0.85482 0.78343 0.80197 0.77515 1.18802 1.21201 1.15926 1.23142 0.83382 1.00807 0.93077 1.77898 0.98689 1.12154 1.27455 1.47961 1.03228 1.11120 1.57038 0.69490 0.87236 0.87009 0.88186 0.84161 0.89479 0.90196 0.86313 0.86832 0.94277 0.94555 0.95135 0.95080 0.92508 0.87078 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.06 10.51 71.24 0.75 0.69 16 2 C 0.29 3.15 8.24 138.23 1.14 4.29 16 3 N -0.57 -10.27 11.19 -179.73 -2.01 -12.28 16 4 C 0.23 4.35 7.30 138.63 1.01 5.36 16 5 C -0.02 -0.40 4.62 -11.30 -0.05 -0.45 16 6 C 0.11 2.46 8.19 83.17 0.68 3.14 16 7 N -0.65 -16.30 3.69 -858.94 -3.17 -19.47 16 8 C 0.54 18.25 8.08 87.66 0.71 18.96 16 9 O -0.59 -25.70 16.76 -3.04 -0.05 -25.76 16 10 C -0.12 -3.80 5.53 29.85 0.17 -3.63 16 11 C -0.08 -3.54 4.44 30.60 0.14 -3.40 16 12 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 13 C -0.54 -33.04 9.66 25.60 0.25 -32.79 16 14 H 0.02 1.34 7.99 -2.91 -0.02 1.31 16 15 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 16 N -0.96 -62.51 13.96 21.45 0.30 -62.21 16 17 Si 0.96 44.55 27.47 68.60 1.88 46.43 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 21 C 0.12 2.01 7.96 83.08 0.66 2.67 16 22 N -0.33 -5.92 12.30 -51.34 -0.63 -6.55 16 23 N -0.47 -5.03 7.45 -50.71 -0.38 -5.40 16 24 H 0.46 1.40 8.96 -213.09 -1.91 -0.51 16 25 H 0.11 -0.20 8.14 -2.38 -0.02 -0.21 16 26 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.10 0.14 8.14 -2.38 -0.02 0.13 16 28 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.11 2.99 8.14 -2.39 -0.02 2.98 16 33 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 36 H 0.03 1.37 7.57 -2.39 -0.02 1.36 16 37 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.63 7.71 -2.38 -0.02 1.62 16 Total: -1.00 -87.41 334.77 1.06 -86.35 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -0.91 Total: 4.16 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 6.03 Total: -5.27 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -5.89 Total: -105.92 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -87.41 1.06 -86.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645135145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.401 kcal (2) G-P(sol) polarization free energy of solvation -87.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds