Wall clock time and date at job start Tue Mar 31 2020 00:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38305 * 119.91954 * 59.72017 * 4 2 1 6 6 C 1.38082 * 120.08205 * 179.76549 * 5 4 2 7 7 C 1.38968 * 119.91616 * 0.50752 * 6 5 4 8 8 S 1.76204 * 120.08298 * 179.72212 * 7 6 5 9 9 C 1.81404 * 102.99534 * 0.02693 * 8 7 6 10 10 C 1.53005 * 109.46974 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47023 * 299.99839 * 10 9 8 12 12 C 1.52995 * 109.46943 * 59.99824 * 10 9 8 13 13 C 1.50698 * 109.46803 * 179.97438 * 10 9 8 14 14 H 1.07998 * 120.00215 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99725 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00262 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99911 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47581 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47478 * 120.00013 * 17 15 13 20 20 H 1.48505 * 109.47119 * 239.99857 * 17 15 13 21 21 C 1.38980 * 119.84484 * 359.75201 * 7 6 5 22 22 C 1.38085 * 119.91400 * 359.97438 * 21 7 6 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.08000 * 119.95727 * 0.02562 * 5 4 2 31 31 H 1.08003 * 120.04309 * 180.26008 * 6 5 4 32 32 H 1.09006 * 109.47339 * 299.99752 * 9 8 7 33 33 H 1.08993 * 109.47412 * 59.99620 * 9 8 7 34 34 H 1.09003 * 109.46864 * 60.00123 * 11 10 9 35 35 H 1.08993 * 109.47056 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.47076 * 300.00106 * 11 10 9 37 37 H 1.09001 * 109.47607 * 60.00680 * 12 10 9 38 38 H 1.09007 * 109.46781 * 179.97438 * 12 10 9 39 39 H 1.08994 * 109.47745 * 299.99647 * 12 10 9 40 40 H 0.96997 * 120.00483 * 180.02562 * 16 15 13 41 41 H 1.07997 * 120.04544 * 179.97438 * 21 7 6 42 42 H 1.08001 * 119.96089 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6924 -0.2398 -2.4858 6 6 2.1548 -0.8852 -3.6155 7 6 2.9539 -2.0152 -3.4900 8 16 3.5403 -2.8466 -4.9286 9 6 2.8428 -1.8607 -6.2822 10 6 3.2669 -2.4633 -7.6231 11 6 4.7936 -2.4598 -7.7238 12 6 2.7526 -3.9009 -7.7216 13 6 2.6870 -1.6447 -8.7476 14 1 2.0773 -0.7807 -8.5279 15 6 2.9356 -1.9980 -10.0570 16 7 3.6793 -3.0492 -10.3246 17 14 2.2173 -0.9829 -11.4508 18 1 1.4241 0.1393 -10.8883 19 1 3.3183 -0.4410 -12.2870 20 1 1.3379 -1.8404 -12.2855 21 6 3.2891 -2.4884 -2.2269 22 6 2.8277 -1.8344 -1.1017 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.0680 0.6361 -2.5825 31 1 1.8924 -0.5147 -4.5955 32 1 1.7551 -1.8635 -6.2108 33 1 3.2088 -0.8364 -6.2118 34 1 5.2127 -3.0522 -6.9104 35 1 5.0957 -2.8887 -8.6792 36 1 5.1600 -1.4356 -7.6536 37 1 1.6650 -3.9035 -7.6500 38 1 3.0544 -4.3301 -8.6771 39 1 3.1717 -4.4933 -6.9083 40 1 3.8545 -3.2976 -11.2457 41 1 3.9096 -3.3665 -2.1256 42 1 3.0873 -2.2018 -0.1198 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651754434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:28 Heat of formation + Delta-G solvation = -6.436164 kcal Electronic energy + Delta-G solvation = -19059.431768 eV Core-core repulsion = 16322.401637 eV Total energy + Delta-G solvation = -2737.030131 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.32991 -36.01573 -35.38148 -31.62903 -30.87576 -29.70528 -27.29260 -26.35413 -25.66459 -25.15904 -23.40080 -22.39666 -20.08847 -19.04558 -17.32827 -16.06495 -15.76659 -15.25407 -14.79359 -14.35079 -13.94575 -13.87173 -13.74905 -13.39684 -13.30083 -12.95003 -12.57339 -12.49629 -12.24538 -11.89996 -11.43804 -11.39930 -11.28166 -11.19609 -10.87801 -10.86692 -10.68843 -10.57601 -10.32976 -10.09379 -9.72335 -9.58465 -9.43127 -9.19054 -8.81777 -8.63795 -8.39928 -6.81225 -6.02616 -4.14206 1.39950 1.53965 2.15540 3.15358 3.25164 3.33989 3.37284 3.83161 4.37776 4.60908 4.70369 5.06295 5.08193 5.11732 5.23493 5.32108 5.45583 5.50301 5.57550 5.67014 5.76552 5.81448 5.91258 5.95516 6.04777 6.07771 6.08016 6.16683 6.45018 6.50720 6.54456 6.72075 6.78658 6.93178 7.07206 7.09122 7.09956 7.36009 7.59599 7.68785 8.02902 8.14102 8.37131 8.85071 9.51346 10.98377 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.003733 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.534679 B = 7497.871959 C = 8129.430399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.095 4.095 6 C -0.134 4.134 7 C -0.081 4.081 8 S -0.124 6.124 9 C -0.074 4.074 10 C 0.082 3.918 11 C -0.134 4.134 12 C -0.134 4.134 13 C -0.507 4.507 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.108 4.108 22 C -0.102 4.102 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.019 0.981 35 H 0.085 0.915 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.085 0.915 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 4.263 17.738 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.201 4.201 4 C -0.102 4.102 5 C -0.114 4.114 6 C -0.159 4.159 7 C -0.194 4.194 8 S 0.124 5.876 9 C -0.222 4.222 10 C 0.080 3.920 11 C -0.192 4.192 12 C -0.192 4.192 13 C -0.547 4.547 14 H 0.074 0.926 15 C -0.135 4.135 16 N -0.521 5.521 17 Si 0.721 3.279 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.132 4.132 22 C -0.122 4.122 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.211 3.137 17.350 17.769 hybrid contribution -1.202 1.701 -0.717 2.203 sum -3.413 4.838 16.633 17.655 Atomic orbital electron populations 1.21863 0.94585 1.01978 1.01716 1.20059 0.95746 0.95876 0.95402 1.21861 1.01262 0.95300 1.01714 1.19743 0.99457 0.96598 0.94400 1.20816 0.99501 0.99440 0.91690 1.21281 0.99320 0.95949 0.99320 1.22220 1.00281 0.98503 0.98421 1.85637 1.65496 1.40366 0.96087 1.24158 1.01877 1.00296 0.95860 1.17991 0.93431 0.93322 0.87227 1.21881 0.96905 0.98713 1.01695 1.21880 0.98208 0.97414 1.01687 1.21046 1.31626 1.11924 0.90074 0.92590 1.24886 0.94928 0.95078 0.98559 1.69829 1.37789 1.25376 1.19103 0.86520 0.78928 0.80238 0.82202 1.19854 1.20984 1.20988 1.20726 1.01342 1.00479 0.90637 1.20895 0.97968 0.95408 0.97919 0.92553 0.92655 0.92448 0.90760 0.92460 0.92651 0.92552 0.86363 0.85662 0.90911 0.90911 0.96180 0.89599 0.95540 0.95537 0.89612 0.96180 0.92963 0.85887 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.00 37.16 0.33 -0.90 16 2 C -0.05 -0.49 3.09 -91.77 -0.28 -0.77 16 3 C -0.14 -1.24 9.01 37.16 0.33 -0.90 16 4 C -0.10 -1.20 4.79 -104.57 -0.50 -1.70 16 5 C -0.09 -1.26 8.70 -39.61 -0.34 -1.60 16 6 C -0.13 -2.11 9.36 -39.37 -0.37 -2.48 16 7 C -0.08 -1.35 6.11 -39.04 -0.24 -1.59 16 8 S -0.12 -2.33 18.98 -107.50 -2.04 -4.37 16 9 C -0.07 -1.53 3.27 37.16 0.12 -1.41 16 10 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 11 C -0.13 -3.20 8.01 37.16 0.30 -2.90 16 12 C -0.13 -3.20 8.01 37.16 0.30 -2.90 16 13 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 16 N -0.88 -23.91 9.35 55.43 0.52 -23.39 16 17 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.11 -1.56 9.79 -39.36 -0.39 -1.95 16 22 C -0.10 -1.28 9.66 -39.61 -0.38 -1.66 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.50 7.37 -51.93 -0.38 0.12 16 26 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 27 H 0.06 0.50 7.40 -51.93 -0.38 0.12 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.12 1.35 7.09 -52.49 -0.37 0.98 16 31 H 0.13 2.00 5.88 -52.48 -0.31 1.69 16 32 H 0.07 1.48 7.75 -51.92 -0.40 1.08 16 33 H 0.07 1.48 7.75 -51.93 -0.40 1.08 16 34 H 0.02 0.44 6.91 -51.93 -0.36 0.08 16 35 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 39 H 0.02 0.44 6.91 -51.93 -0.36 0.08 16 40 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 41 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 1.19 7.94 -52.49 -0.42 0.77 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -26.82 339.65 -9.92 -36.74 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.93 Total: 1.05 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -1.57 Total: -30.76 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.52 Total: -23.39 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.04 Total: -4.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.82 -9.92 -36.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651754434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.302 kcal (2) G-P(sol) polarization free energy of solvation -26.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds