Wall clock time and date at job start Tue Mar 31 2020 00:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38305 * 119.91954 * 59.72017 * 4 2 1 6 6 C 1.38082 * 120.08205 * 179.76549 * 5 4 2 7 7 C 1.38968 * 119.91616 * 0.50752 * 6 5 4 8 8 S 1.76204 * 120.08298 * 179.72212 * 7 6 5 9 9 C 1.81404 * 102.99534 * 0.02693 * 8 7 6 10 10 C 1.53005 * 109.46974 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47023 * 299.99839 * 10 9 8 12 12 C 1.52995 * 109.46943 * 59.99824 * 10 9 8 13 13 C 1.50698 * 109.46803 * 179.97438 * 10 9 8 14 14 H 1.07998 * 120.00215 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99725 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00262 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99911 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47581 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47478 * 120.00013 * 17 15 13 20 20 H 1.48505 * 109.47119 * 239.99857 * 17 15 13 21 21 C 1.38980 * 119.84484 * 359.75201 * 7 6 5 22 22 C 1.38085 * 119.91400 * 359.97438 * 21 7 6 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.08000 * 119.95727 * 0.02562 * 5 4 2 31 31 H 1.08003 * 120.04309 * 180.26008 * 6 5 4 32 32 H 1.09006 * 109.47339 * 299.99752 * 9 8 7 33 33 H 1.08993 * 109.47412 * 59.99620 * 9 8 7 34 34 H 1.09003 * 109.46864 * 60.00123 * 11 10 9 35 35 H 1.08993 * 109.47056 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.47076 * 300.00106 * 11 10 9 37 37 H 1.09001 * 109.47607 * 60.00680 * 12 10 9 38 38 H 1.09007 * 109.46781 * 179.97438 * 12 10 9 39 39 H 1.08994 * 109.47745 * 299.99647 * 12 10 9 40 40 H 0.96997 * 120.00483 * 180.02562 * 16 15 13 41 41 H 1.07997 * 120.04544 * 179.97438 * 21 7 6 42 42 H 1.08001 * 119.96089 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6924 -0.2398 -2.4858 6 6 2.1548 -0.8852 -3.6155 7 6 2.9539 -2.0152 -3.4900 8 16 3.5403 -2.8466 -4.9286 9 6 2.8428 -1.8607 -6.2822 10 6 3.2669 -2.4633 -7.6231 11 6 4.7936 -2.4598 -7.7238 12 6 2.7526 -3.9009 -7.7216 13 6 2.6870 -1.6447 -8.7476 14 1 2.0773 -0.7807 -8.5279 15 6 2.9356 -1.9980 -10.0570 16 7 3.6793 -3.0492 -10.3246 17 14 2.2173 -0.9829 -11.4508 18 1 1.4241 0.1393 -10.8883 19 1 3.3183 -0.4410 -12.2870 20 1 1.3379 -1.8404 -12.2855 21 6 3.2891 -2.4884 -2.2269 22 6 2.8277 -1.8344 -1.1017 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.0680 0.6361 -2.5825 31 1 1.8924 -0.5147 -4.5955 32 1 1.7551 -1.8635 -6.2108 33 1 3.2088 -0.8364 -6.2118 34 1 5.2127 -3.0522 -6.9104 35 1 5.0957 -2.8887 -8.6792 36 1 5.1600 -1.4356 -7.6536 37 1 1.6650 -3.9035 -7.6500 38 1 3.0544 -4.3301 -8.6771 39 1 3.1717 -4.4933 -6.9083 40 1 3.8545 -3.2976 -11.2457 41 1 3.9096 -3.3665 -2.1256 42 1 3.0873 -2.2018 -0.1198 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651754434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:27 Heat of formation + Delta-G solvation = -16.164223 kcal Electronic energy + Delta-G solvation = -19059.853608 eV Core-core repulsion = 16322.401637 eV Total energy + Delta-G solvation = -2737.451971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35535 -37.91674 -36.24004 -33.58844 -32.00951 -30.72034 -28.06002 -27.93988 -27.61403 -27.18757 -24.39909 -23.49915 -21.04600 -20.82314 -18.61945 -17.93816 -16.85617 -16.66544 -16.34265 -15.64840 -15.29716 -15.18856 -14.77015 -14.58226 -14.47377 -14.27897 -14.12304 -13.58776 -13.37840 -13.23267 -13.08594 -12.95380 -12.71033 -12.50493 -12.27832 -12.27224 -12.07130 -12.02592 -11.70809 -11.50320 -11.49479 -11.36320 -11.17230 -10.49362 -10.47137 -10.29810 -9.90811 -8.21326 -8.03486 -6.21470 0.28952 0.44906 0.72886 1.41046 1.44390 1.53825 1.67625 2.44549 2.75142 3.19673 3.78723 3.84359 4.04807 4.20177 4.20871 4.27974 4.36677 4.46120 4.56604 4.58169 4.69960 4.84505 4.87249 4.90763 4.97527 5.01463 5.03225 5.10686 5.15928 5.17465 5.18568 5.34442 5.41313 5.42546 5.42722 5.46156 5.61772 5.64060 5.73314 6.02897 6.05876 6.16406 6.37909 6.83243 7.46533 8.95947 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.003733 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.534679 B = 7497.871959 C = 8129.430399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.098 4.098 6 C -0.149 4.149 7 C -0.103 4.103 8 S -0.141 6.141 9 C -0.062 4.062 10 C 0.074 3.926 11 C -0.123 4.123 12 C -0.123 4.123 13 C -0.525 4.525 14 H 0.051 0.949 15 C 0.025 3.975 16 N -0.903 5.903 17 Si 0.951 3.049 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.112 4.112 22 C -0.100 4.100 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.260 0.740 41 H 0.132 0.868 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 5.245 20.187 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.092 4.092 5 C -0.118 4.118 6 C -0.173 4.173 7 C -0.216 4.216 8 S 0.105 5.895 9 C -0.211 4.211 10 C 0.072 3.928 11 C -0.181 4.181 12 C -0.181 4.181 13 C -0.565 4.565 14 H 0.069 0.931 15 C -0.175 4.175 16 N -0.542 5.542 17 Si 0.777 3.223 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.136 4.136 22 C -0.120 4.120 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.914 4.131 19.816 20.451 hybrid contribution -1.009 1.428 -1.303 2.181 sum -3.923 5.560 18.514 19.724 Atomic orbital electron populations 1.21862 0.93883 1.01909 1.02447 1.20146 0.96245 0.96141 0.94396 1.21860 1.00965 0.94827 1.02443 1.20168 0.97887 0.96039 0.95094 1.21038 0.99443 0.99793 0.91498 1.21319 0.99953 0.96269 0.99803 1.22158 1.02201 0.99465 0.97766 1.85445 1.66335 1.40869 0.96869 1.23784 1.01653 1.00158 0.95460 1.17982 0.93182 0.93113 0.88474 1.21725 0.97173 0.98403 1.00768 1.21724 0.97905 0.97675 1.00757 1.21344 1.31777 1.12143 0.91225 0.93059 1.25557 0.95315 0.96027 1.00607 1.69953 1.38467 1.26346 1.19419 0.85621 0.78216 0.78945 0.79518 1.19470 1.20772 1.20778 1.20943 1.01380 1.00926 0.90385 1.21272 0.97077 0.95005 0.98607 0.93031 0.90826 0.92922 0.89122 0.92939 0.90820 0.93033 0.84660 0.86810 0.91230 0.91229 0.94947 0.91981 0.95886 0.95881 0.91996 0.94947 0.93006 0.85052 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.00 71.98 0.65 -1.36 16 2 C -0.05 -0.77 3.09 -11.54 -0.04 -0.81 16 3 C -0.14 -2.01 9.01 71.98 0.65 -1.36 16 4 C -0.09 -1.91 4.79 -19.83 -0.09 -2.00 16 5 C -0.10 -2.45 8.70 22.25 0.19 -2.25 16 6 C -0.15 -4.63 9.36 22.41 0.21 -4.42 16 7 C -0.10 -3.38 6.11 22.62 0.14 -3.24 16 8 S -0.14 -5.34 18.98 -56.49 -1.07 -6.41 16 9 C -0.06 -2.63 3.27 71.98 0.24 -2.39 16 10 C 0.07 3.60 0.52 -52.93 -0.03 3.57 16 11 C -0.12 -5.98 8.01 71.98 0.58 -5.40 16 12 C -0.12 -5.97 8.01 71.98 0.58 -5.40 16 13 C -0.53 -27.98 8.01 25.60 0.21 -27.77 16 14 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 15 C 0.02 1.32 5.15 84.66 0.44 1.75 16 16 N -0.90 -49.84 9.35 21.45 0.20 -49.64 16 17 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.11 -3.08 9.79 22.41 0.22 -2.86 16 22 C -0.10 -2.20 9.66 22.25 0.21 -1.99 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.78 7.37 -2.39 -0.02 0.77 16 26 H 0.09 1.13 7.87 -2.39 -0.02 1.11 16 27 H 0.05 0.78 7.40 -2.39 -0.02 0.77 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.14 2.84 7.09 -2.91 -0.02 2.82 16 31 H 0.11 3.70 5.88 -2.91 -0.02 3.69 16 32 H 0.07 2.91 7.75 -2.39 -0.02 2.89 16 33 H 0.07 2.91 7.75 -2.39 -0.02 2.89 16 34 H 0.03 1.45 6.91 -2.39 -0.02 1.43 16 35 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 36 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 3.31 6.07 -2.38 -0.01 3.29 16 39 H 0.03 1.45 6.91 -2.39 -0.02 1.43 16 40 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 41 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 42 H 0.15 2.36 7.94 -2.91 -0.02 2.33 16 Total: -1.00 -57.48 339.65 6.27 -51.21 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.97 Total: 16.07 kcal Atomic # 6 Polarization: -60.07 SS G_CDS: 4.14 Total: -55.93 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.20 Total: -49.64 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.07 Total: -6.41 kcal Total: -57.48 6.27 -51.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651754434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.045 kcal (2) G-P(sol) polarization free energy of solvation -57.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds