Wall clock time and date at job start Tue Mar 31 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 N 1.46507 * 109.47160 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99292 * 275.30847 * 4 3 2 6 6 H 1.07991 * 120.00686 * 37.58178 * 5 4 3 7 7 C 1.38817 * 119.99561 * 217.57691 * 5 4 3 8 8 N 1.31622 * 119.99819 * 21.42553 * 7 5 4 9 9 Si 1.86797 * 120.00093 * 201.42703 * 7 5 4 10 10 H 1.48503 * 109.47077 * 89.99702 * 9 7 5 11 11 H 1.48500 * 109.47390 * 209.99789 * 9 7 5 12 12 H 1.48498 * 109.46920 * 330.00279 * 9 7 5 13 13 C 1.46493 * 120.00279 * 95.30648 * 4 3 2 14 14 C 1.52997 * 109.47256 * 270.00206 * 13 4 3 15 15 N 1.46501 * 109.47455 * 179.97438 * 14 13 4 16 16 C 1.34777 * 120.00104 * 179.97438 * 15 14 13 17 17 O 1.21545 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.47836 * 119.99629 * 179.97438 * 16 15 14 19 19 C 1.39948 * 120.93311 * 180.02562 * 18 16 15 20 20 N 1.32152 * 118.92079 * 179.73093 * 19 18 16 21 21 C 1.31877 * 120.96466 * 0.25012 * 20 19 18 22 22 N 1.31858 * 122.09741 * 0.02706 * 21 20 19 23 23 C 1.32145 * 120.96986 * 359.97369 * 22 21 20 24 24 H 1.09001 * 109.47517 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47185 * 300.00714 * 1 2 3 26 26 H 1.09007 * 109.46782 * 60.00231 * 1 2 3 27 27 H 1.09003 * 109.47306 * 239.99840 * 2 1 3 28 28 H 1.09001 * 109.47088 * 119.99446 * 2 1 3 29 29 H 1.08994 * 109.47099 * 59.99625 * 3 2 1 30 30 H 1.09007 * 109.47050 * 299.99605 * 3 2 1 31 31 H 0.97002 * 119.99283 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47439 * 149.99961 * 13 4 3 33 33 H 1.09001 * 109.47204 * 29.99970 * 13 4 3 34 34 H 1.09007 * 109.47483 * 59.99909 * 14 13 4 35 35 H 1.09001 * 109.46821 * 299.99998 * 14 13 4 36 36 H 0.96999 * 119.99531 * 0.02562 * 15 14 13 37 37 H 1.07993 * 120.54289 * 0.02562 * 19 18 16 38 38 H 1.08004 * 118.94739 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.54219 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3326 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0510 1.3716 8 7 5.6025 3.1237 0.6478 9 14 6.5988 1.4953 2.6567 10 1 7.5685 0.5565 2.0373 11 1 7.3245 2.6766 3.1890 12 1 5.8866 0.8108 3.7655 13 6 4.2370 1.5600 -1.2641 14 6 4.4918 0.1646 -1.8376 15 7 5.2233 0.2821 -3.1015 16 6 5.5602 -0.8260 -3.7906 17 8 5.2569 -1.9229 -3.3638 18 6 6.2979 -0.7073 -5.0663 19 6 6.6572 -1.8448 -5.7981 20 7 7.3115 -1.6923 -6.9361 21 6 7.6293 -0.4921 -7.3804 22 7 7.3153 0.6053 -6.7203 23 6 6.6612 0.5454 -5.5736 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 6.4215 3.6259 0.7820 32 1 5.1896 2.0595 -1.0871 33 1 3.6477 2.1420 -1.9727 34 1 3.5392 -0.3350 -2.0147 35 1 5.0811 -0.4174 -1.1290 36 1 5.4657 1.1575 -3.4419 37 1 6.3998 -2.8310 -5.4411 38 1 8.1647 -0.4053 -8.3144 39 1 6.4071 1.4486 -5.0388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663657361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:39 Heat of formation + Delta-G solvation = 24.738632 kcal Electronic energy + Delta-G solvation = -21199.274325 eV Core-core repulsion = 17949.595572 eV Total energy + Delta-G solvation = -3249.678754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33567 -39.15484 -36.56485 -34.63091 -33.88992 -32.96953 -32.46264 -30.81272 -28.31637 -25.62729 -25.38261 -24.75068 -23.33799 -21.15373 -20.78854 -20.14797 -18.26009 -17.81067 -17.33840 -16.59911 -15.51426 -15.37395 -15.04235 -14.56741 -14.40812 -14.18442 -13.91936 -13.83244 -13.59972 -13.04998 -12.85271 -12.70053 -11.82128 -11.62878 -11.58424 -11.24918 -11.14985 -10.98689 -10.80195 -10.50461 -10.42334 -10.15288 -9.97861 -9.93617 -9.92756 -9.66265 -9.56705 -8.72214 -8.53984 -6.69360 -5.90216 -3.49183 0.23831 0.76618 2.85774 3.22667 3.32589 3.39458 3.41536 3.64641 3.78664 3.89625 4.22495 4.40561 4.56578 4.83142 5.05290 5.20758 5.40865 5.49364 5.62601 5.71415 5.93821 6.00706 6.03153 6.12239 6.23512 6.35215 6.46447 6.56626 6.58055 6.60442 6.67670 6.90536 6.93324 7.12971 7.43301 7.65036 7.73019 7.74987 8.28739 8.41674 9.07896 9.69541 10.27162 11.09983 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.004546 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.854670 B = 6158.335106 C = 7229.014896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.063 0.937 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.136 3.864 14 C 0.096 3.904 15 N -0.710 5.710 16 C 0.559 3.441 17 O -0.536 6.536 18 C -0.233 4.233 19 C 0.204 3.796 20 N -0.524 5.524 21 C 0.307 3.693 22 N -0.522 5.522 23 C 0.182 3.818 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.396 0.604 37 H 0.181 0.819 38 H 0.200 0.800 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -3.820 -12.285 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.392 4.392 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.009 3.991 14 C -0.029 4.029 15 N -0.360 5.360 16 C 0.343 3.657 17 O -0.414 6.414 18 C -0.241 4.241 19 C 0.037 3.963 20 N -0.237 5.237 21 C 0.020 3.980 22 N -0.235 5.235 23 C 0.015 3.985 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.198 0.802 38 H 0.217 0.783 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.169 -4.348 -12.774 13.495 hybrid contribution 0.429 0.056 1.236 1.309 sum 0.597 -4.293 -11.538 12.326 Atomic orbital electron populations 1.21722 0.97307 1.00434 1.01018 1.22185 0.93849 1.00897 1.01579 1.20950 0.84962 0.93002 0.98986 1.43596 0.99471 1.84765 1.02011 1.19046 1.05658 1.20507 0.93987 0.91958 1.25181 1.00791 0.94476 0.98109 1.69992 1.25670 1.14714 1.42548 0.86389 0.81610 0.77907 0.81500 1.21227 1.21664 1.20098 1.21073 1.00473 0.91018 0.86574 1.22599 0.94937 1.03203 0.82156 1.46074 1.57274 1.08043 1.24596 1.17787 0.79576 0.85159 0.83169 1.90785 1.54963 1.26266 1.69374 1.22002 1.05466 0.96912 0.99695 1.23526 0.86174 0.99437 0.87122 1.68569 1.13436 1.27545 1.14156 1.25240 0.91624 0.82889 0.98257 1.68468 1.13325 1.33609 1.08099 1.23564 0.87761 0.96985 0.90200 0.93787 0.93179 0.93473 0.92952 0.92320 0.93509 0.94725 0.93458 0.88319 0.95173 0.92564 0.91332 0.76932 0.80163 0.78306 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.15 -2.56 6.23 -26.73 -0.17 -2.73 16 3 C 0.15 2.94 5.72 -4.04 -0.02 2.92 16 4 N -0.58 -13.43 2.43 -173.24 -0.42 -13.85 16 5 C -0.26 -6.81 9.45 -15.06 -0.14 -6.95 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.31 16 8 N -0.89 -23.98 11.47 55.49 0.64 -23.35 16 9 Si 0.90 20.91 29.60 -169.99 -5.03 15.88 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.14 2.85 5.45 -4.05 -0.02 2.83 16 14 C 0.10 1.82 6.00 -4.04 -0.02 1.79 16 15 N -0.71 -10.89 5.51 -61.25 -0.34 -11.23 16 16 C 0.56 8.74 7.79 -12.33 -0.10 8.64 16 17 O -0.54 -10.22 16.44 5.33 0.09 -10.13 16 18 C -0.23 -2.94 5.91 -104.69 -0.62 -3.56 16 19 C 0.20 2.46 10.88 -16.77 -0.18 2.28 16 20 N -0.52 -6.00 10.42 -14.24 -0.15 -6.15 16 21 C 0.31 3.07 12.27 -92.03 -1.13 1.94 16 22 N -0.52 -5.81 10.42 -14.24 -0.15 -5.96 16 23 C 0.18 2.00 10.81 -16.78 -0.18 1.82 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.94 6.64 -51.93 -0.34 0.60 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 30 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.10 2.33 5.52 -51.93 -0.29 2.05 16 33 H 0.03 0.58 7.86 -51.93 -0.41 0.18 16 34 H 0.06 1.09 6.64 -51.93 -0.34 0.74 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.40 4.97 6.61 -40.82 -0.27 4.70 16 37 H 0.18 2.01 7.74 -52.49 -0.41 1.61 16 38 H 0.20 1.25 8.06 -52.48 -0.42 0.82 16 39 H 0.17 1.49 6.54 -52.49 -0.34 1.15 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -30.36 331.46 -7.99 -38.35 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.32 Total: 3.88 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.30 Total: 7.56 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.42 Total: -60.53 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.36 -7.99 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663657361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.089 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds