Wall clock time and date at job start Tue Mar 31 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 N 1.46507 * 109.47160 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99292 * 275.30847 * 4 3 2 6 6 H 1.07991 * 120.00686 * 37.58178 * 5 4 3 7 7 C 1.38817 * 119.99561 * 217.57691 * 5 4 3 8 8 N 1.31622 * 119.99819 * 21.42553 * 7 5 4 9 9 Si 1.86797 * 120.00093 * 201.42703 * 7 5 4 10 10 H 1.48503 * 109.47077 * 89.99702 * 9 7 5 11 11 H 1.48500 * 109.47390 * 209.99789 * 9 7 5 12 12 H 1.48498 * 109.46920 * 330.00279 * 9 7 5 13 13 C 1.46493 * 120.00279 * 95.30648 * 4 3 2 14 14 C 1.52997 * 109.47256 * 270.00206 * 13 4 3 15 15 N 1.46501 * 109.47455 * 179.97438 * 14 13 4 16 16 C 1.34777 * 120.00104 * 179.97438 * 15 14 13 17 17 O 1.21545 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.47836 * 119.99629 * 179.97438 * 16 15 14 19 19 C 1.39948 * 120.93311 * 180.02562 * 18 16 15 20 20 N 1.32152 * 118.92079 * 179.73093 * 19 18 16 21 21 C 1.31877 * 120.96466 * 0.25012 * 20 19 18 22 22 N 1.31858 * 122.09741 * 0.02706 * 21 20 19 23 23 C 1.32145 * 120.96986 * 359.97369 * 22 21 20 24 24 H 1.09001 * 109.47517 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47185 * 300.00714 * 1 2 3 26 26 H 1.09007 * 109.46782 * 60.00231 * 1 2 3 27 27 H 1.09003 * 109.47306 * 239.99840 * 2 1 3 28 28 H 1.09001 * 109.47088 * 119.99446 * 2 1 3 29 29 H 1.08994 * 109.47099 * 59.99625 * 3 2 1 30 30 H 1.09007 * 109.47050 * 299.99605 * 3 2 1 31 31 H 0.97002 * 119.99283 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47439 * 149.99961 * 13 4 3 33 33 H 1.09001 * 109.47204 * 29.99970 * 13 4 3 34 34 H 1.09007 * 109.47483 * 59.99909 * 14 13 4 35 35 H 1.09001 * 109.46821 * 299.99998 * 14 13 4 36 36 H 0.96999 * 119.99531 * 0.02562 * 15 14 13 37 37 H 1.07993 * 120.54289 * 0.02562 * 19 18 16 38 38 H 1.08004 * 118.94739 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.54219 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3326 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0510 1.3716 8 7 5.6025 3.1237 0.6478 9 14 6.5988 1.4953 2.6567 10 1 7.5685 0.5565 2.0373 11 1 7.3245 2.6766 3.1890 12 1 5.8866 0.8108 3.7655 13 6 4.2370 1.5600 -1.2641 14 6 4.4918 0.1646 -1.8376 15 7 5.2233 0.2821 -3.1015 16 6 5.5602 -0.8260 -3.7906 17 8 5.2569 -1.9229 -3.3638 18 6 6.2979 -0.7073 -5.0663 19 6 6.6572 -1.8448 -5.7981 20 7 7.3115 -1.6923 -6.9361 21 6 7.6293 -0.4921 -7.3804 22 7 7.3153 0.6053 -6.7203 23 6 6.6612 0.5454 -5.5736 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 6.4215 3.6259 0.7820 32 1 5.1896 2.0595 -1.0871 33 1 3.6477 2.1420 -1.9727 34 1 3.5392 -0.3350 -2.0147 35 1 5.0811 -0.4174 -1.1290 36 1 5.4657 1.1575 -3.4419 37 1 6.3998 -2.8310 -5.4411 38 1 8.1647 -0.4053 -8.3144 39 1 6.4071 1.4486 -5.0388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663657361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:39 Heat of formation + Delta-G solvation = 5.769616 kcal Electronic energy + Delta-G solvation = -21200.096884 eV Core-core repulsion = 17949.595572 eV Total energy + Delta-G solvation = -3250.501312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.26885 -40.42817 -38.24645 -35.97573 -34.86413 -34.59219 -33.54827 -32.49555 -29.83504 -27.33478 -26.48316 -25.68932 -24.81395 -22.67684 -22.14234 -21.70976 -19.37246 -18.76363 -18.58064 -18.12890 -17.02853 -16.75452 -16.57416 -15.99161 -15.79888 -15.45044 -15.34228 -14.73975 -14.68374 -14.62238 -14.29984 -14.26364 -13.33580 -13.08176 -12.92668 -12.81126 -12.62880 -12.52319 -12.22022 -12.02992 -12.02331 -11.86443 -11.68047 -11.34278 -11.11434 -10.92485 -10.53766 -10.44260 -10.10460 -8.59092 -7.86142 -5.48864 -0.68290 -0.12254 1.43703 1.48388 1.54546 1.70518 1.97746 2.49722 2.70316 2.99267 3.06727 3.21194 3.32191 3.55119 3.73190 3.85809 4.22939 4.27849 4.35574 4.39406 4.53279 4.62779 4.69153 4.73855 4.86614 5.00850 5.14707 5.16905 5.23668 5.26956 5.31991 5.45196 5.63692 5.66054 5.69973 5.74309 6.39632 6.47356 6.86028 7.04498 7.16062 7.82789 8.34551 9.09497 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.004546 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.854670 B = 6158.335106 C = 7229.014896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.270 4.270 6 H 0.051 0.949 7 C -0.024 4.024 8 N -0.909 5.909 9 Si 0.948 3.052 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.273 1.273 13 C 0.143 3.857 14 C 0.119 3.881 15 N -0.702 5.702 16 C 0.564 3.436 17 O -0.575 6.575 18 C -0.246 4.246 19 C 0.204 3.796 20 N -0.534 5.534 21 C 0.314 3.686 22 N -0.531 5.531 23 C 0.192 3.808 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.254 0.746 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.412 0.588 37 H 0.183 0.817 38 H 0.238 0.762 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 -3.648 -13.808 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.069 0.931 7 C -0.223 4.223 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.197 1.197 13 C 0.016 3.984 14 C -0.007 4.007 15 N -0.354 5.354 16 C 0.350 3.650 17 O -0.456 6.456 18 C -0.254 4.254 19 C 0.038 3.962 20 N -0.247 5.247 21 C 0.028 3.972 22 N -0.245 5.245 23 C 0.025 3.975 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.249 0.751 37 H 0.200 0.800 38 H 0.253 0.747 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.106 -4.162 -14.324 14.917 hybrid contribution 0.446 0.003 1.620 1.680 sum 0.552 -4.159 -12.704 13.379 Atomic orbital electron populations 1.21657 0.94364 1.01749 1.01974 1.22016 0.96337 0.98782 1.00329 1.21055 0.83308 0.94523 0.99115 1.43830 1.00859 1.85038 1.01965 1.19158 1.06186 1.19913 0.94791 0.93101 1.25697 1.02003 0.94681 0.99879 1.70074 1.25914 1.15439 1.43812 0.85585 0.79701 0.77259 0.79815 1.21642 1.21614 1.19744 1.20953 0.99385 0.91832 0.86261 1.22040 0.94530 1.01275 0.82902 1.45844 1.56998 1.09096 1.23432 1.18131 0.78839 0.84284 0.83738 1.90763 1.56575 1.27664 1.70578 1.21661 1.06989 0.98055 0.98704 1.23629 0.85800 0.99511 0.87283 1.68671 1.13859 1.28329 1.13872 1.26039 0.90169 0.82112 0.98841 1.68600 1.13752 1.33978 1.08142 1.23887 0.86536 0.96994 0.90071 0.92320 0.92680 0.92067 0.93435 0.94329 0.94728 0.93105 0.93657 0.90703 0.93383 0.92776 0.94708 0.75123 0.80013 0.74655 0.78807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.13 -4.68 6.23 30.59 0.19 -4.49 16 3 C 0.15 5.75 5.72 86.38 0.49 6.24 16 4 N -0.60 -27.87 2.43 -702.01 -1.71 -29.58 16 5 C -0.27 -14.23 9.45 84.03 0.79 -13.44 16 6 H 0.05 2.74 7.92 -2.92 -0.02 2.72 16 7 C -0.02 -1.28 4.95 84.86 0.42 -0.86 16 8 N -0.91 -49.51 11.47 21.65 0.25 -49.26 16 9 Si 0.95 43.42 29.60 68.60 2.03 45.45 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 13 C 0.14 5.98 5.45 86.38 0.47 6.45 16 14 C 0.12 4.53 6.00 86.38 0.52 5.05 16 15 N -0.70 -21.20 5.51 -465.98 -2.57 -23.77 16 16 C 0.56 17.46 7.79 86.78 0.68 18.13 16 17 O -0.58 -22.21 16.44 -3.86 -0.06 -22.28 16 18 C -0.25 -5.93 5.91 -19.91 -0.12 -6.05 16 19 C 0.20 4.71 10.88 85.06 0.93 5.64 16 20 N -0.53 -11.19 10.42 -198.98 -2.07 -13.27 16 21 C 0.31 5.41 12.27 180.84 2.22 7.63 16 22 N -0.53 -10.44 10.42 -198.98 -2.07 -12.51 16 23 C 0.19 3.83 10.81 85.06 0.92 4.75 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.05 1.68 6.64 -2.39 -0.02 1.67 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 30 H 0.05 1.83 7.83 -2.38 -0.02 1.81 16 31 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.08 3.57 5.52 -2.38 -0.01 3.55 16 33 H 0.05 1.81 7.86 -2.39 -0.02 1.79 16 34 H 0.05 2.09 6.64 -2.38 -0.02 2.08 16 35 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.41 9.80 6.61 -92.71 -0.61 9.19 16 37 H 0.18 4.02 7.74 -2.91 -0.02 3.99 16 38 H 0.24 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.20 2.86 6.54 -2.91 -0.02 2.84 16 Total: -1.00 -65.31 331.46 2.46 -62.85 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.45 Total: 16.31 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 8.22 Total: 26.04 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -8.18 Total: -128.38 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.31 2.46 -62.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663657361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.617 kcal (2) G-P(sol) polarization free energy of solvation -65.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds