Wall clock time and date at job start Tue Mar 31 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21520 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.48137 * 119.99951 * 179.97438 * 7 6 5 10 10 C 1.39765 * 121.14822 * 359.72358 * 9 7 6 11 11 N 1.31891 * 119.65967 * 179.75565 * 10 9 7 12 12 N 1.28282 * 122.32242 * 0.53688 * 11 10 9 13 13 C 1.31879 * 122.52547 * 359.72259 * 12 11 10 14 14 C 1.50697 * 120.01660 * 180.02562 * 13 12 11 15 15 C 1.38542 * 119.96642 * 359.97438 * 13 12 11 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08000 * 120.16932 * 359.97438 * 10 9 7 34 34 H 1.09007 * 109.47267 * 269.97416 * 14 13 12 35 35 H 1.08993 * 109.47551 * 29.97140 * 14 13 12 36 36 H 1.08997 * 109.47609 * 149.97664 * 14 13 12 37 37 H 1.08010 * 121.09015 * 179.97438 * 15 13 12 38 38 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1648 2.1467 -0.2596 9 6 5.8893 4.4509 0.0336 10 6 5.0141 5.5235 0.2257 11 7 5.4950 6.7469 0.3340 12 7 6.7504 6.9995 0.2594 13 6 7.6537 6.0566 0.0746 14 6 9.1148 6.4172 -0.0039 15 6 7.2588 4.7341 -0.0464 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.5658 5.5007 2.2897 23 1 -2.6061 3.3542 1.8525 24 1 -2.0861 4.0083 4.1289 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 3.9499 5.3511 0.2888 34 1 9.3832 6.6226 -1.0402 35 1 9.3035 7.3029 0.6027 36 1 9.7146 5.5870 0.3690 37 1 7.9831 3.9474 -0.1985 38 1 2.2720 2.1231 1.9978 39 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665782122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:51 Heat of formation + Delta-G solvation = 22.402260 kcal Electronic energy + Delta-G solvation = -21335.175213 eV Core-core repulsion = 18085.395147 eV Total energy + Delta-G solvation = -3249.780067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35276 -39.44864 -36.97943 -34.45000 -33.92278 -33.30422 -32.60080 -29.72313 -28.51283 -28.08772 -25.30605 -24.01234 -23.43694 -22.48509 -20.65220 -20.08169 -18.15733 -17.70688 -17.46476 -16.40058 -15.69222 -15.64952 -15.22123 -14.95488 -14.47295 -14.20705 -13.69040 -13.66644 -13.38868 -13.27446 -13.20234 -12.88547 -12.68538 -12.16107 -11.74128 -11.16106 -11.07515 -10.85558 -10.70157 -10.44303 -10.42499 -10.35564 -10.16962 -9.97751 -9.93514 -9.69522 -9.28417 -9.04347 -8.97428 -7.18942 -6.18971 -3.22132 0.20014 0.68409 2.69515 3.03573 3.47090 3.49447 3.50233 3.64338 3.78548 4.18923 4.29983 4.49604 4.57806 4.62299 4.95241 5.10115 5.20733 5.23750 5.25966 5.45174 5.50834 5.62560 5.70710 5.74420 5.79625 5.81586 5.94547 5.96773 6.21399 6.31756 6.41282 6.46464 6.61327 6.85316 7.14942 7.50768 7.71672 8.10173 8.50694 8.64305 9.07694 9.94813 10.08910 11.27622 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.004736 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.010377 B = 5910.669485 C = 7241.643137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.057 0.943 5 C 0.112 3.888 6 N -0.700 5.700 7 C 0.558 3.442 8 O -0.538 6.538 9 C -0.124 4.124 10 C 0.069 3.931 11 N -0.234 5.234 12 N -0.232 5.232 13 C 0.061 3.939 14 C -0.099 4.099 15 C -0.061 4.061 16 N -0.733 5.733 17 C -0.333 4.333 18 H 0.069 0.931 19 C -0.040 4.040 20 N -0.939 5.939 21 Si 1.077 2.923 22 H -0.295 1.295 23 H -0.294 1.294 24 H -0.289 1.289 25 H 0.033 0.967 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.180 0.820 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.161 0.839 38 H 0.367 0.633 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.263 0.705 -9.147 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.075 0.925 5 C -0.012 4.012 6 N -0.352 5.352 7 C 0.342 3.658 8 O -0.416 6.416 9 C -0.138 4.138 10 C -0.096 4.096 11 N -0.074 5.074 12 N -0.076 5.076 13 C -0.083 4.083 14 C -0.158 4.158 15 C -0.091 4.091 16 N -0.377 5.377 17 C -0.463 4.463 18 H 0.087 0.913 19 C -0.238 4.238 20 N -0.584 5.584 21 Si 0.908 3.092 22 H -0.222 1.222 23 H -0.221 1.221 24 H -0.215 1.215 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.196 0.804 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.179 0.821 38 H 0.201 0.799 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.254 2.490 -8.190 13.357 hybrid contribution 0.990 -2.205 -0.917 2.586 sum 11.245 0.285 -9.107 14.473 Atomic orbital electron populations 1.21761 0.95447 0.99687 1.03430 1.22053 0.97244 0.98049 1.00025 1.20521 0.89421 0.93044 0.91261 0.92522 1.21820 0.96017 0.81710 1.01651 1.45922 1.06506 1.11516 1.71214 1.17892 0.83022 0.87144 0.77735 1.90763 1.56069 1.45093 1.49666 1.21316 0.95191 0.95648 1.01678 1.24679 1.02338 0.89397 0.93178 1.73091 1.06146 1.19220 1.08957 1.72842 0.96473 1.30547 1.07691 1.22940 0.99004 0.90416 0.95961 1.20694 0.87621 1.03594 1.03853 1.22462 0.95664 0.97869 0.93145 1.42486 1.16943 1.67082 1.11214 1.20019 0.92629 1.32581 1.01090 0.91305 1.25712 1.05667 1.00246 0.92211 1.70874 1.08401 1.47182 1.31961 0.83261 0.74351 0.75840 0.75702 1.22221 1.22114 1.21463 0.94810 0.89562 0.94052 0.93714 0.92641 0.91414 0.91196 0.75132 0.80354 0.89683 0.89677 0.90018 0.82118 0.79906 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.18 37.15 0.34 -2.19 16 2 C -0.13 -2.19 5.61 -26.73 -0.15 -2.34 16 3 C 0.17 2.92 2.59 -67.93 -0.18 2.74 16 4 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 5 C 0.11 1.74 5.23 -4.04 -0.02 1.72 16 6 N -0.70 -10.70 5.35 -61.16 -0.33 -11.03 16 7 C 0.56 8.63 7.80 -12.20 -0.10 8.54 16 8 O -0.54 -9.51 16.49 5.35 0.09 -9.42 16 9 C -0.12 -1.72 5.92 -104.57 -0.62 -2.34 16 10 C 0.07 0.98 10.84 -16.96 -0.18 0.80 16 11 N -0.23 -3.66 11.49 30.78 0.35 -3.31 16 12 N -0.23 -3.36 11.40 33.57 0.38 -2.98 16 13 C 0.06 0.71 6.86 -82.46 -0.57 0.15 16 14 C -0.10 -0.73 10.19 36.00 0.37 -0.36 16 15 C -0.06 -0.74 9.43 -38.78 -0.37 -1.10 16 16 N -0.73 -15.84 4.50 -53.43 -0.24 -16.08 16 17 C -0.33 -8.21 7.75 -15.06 -0.12 -8.33 16 18 H 0.07 1.69 7.32 -52.48 -0.38 1.31 16 19 C -0.04 -1.07 5.50 -17.43 -0.10 -1.16 16 20 N -0.94 -27.19 13.70 55.49 0.76 -26.43 16 21 Si 1.08 24.53 29.92 -169.99 -5.09 19.45 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 1.79 5.99 -51.93 -0.31 1.48 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 6.30 6.29 -40.82 -0.26 6.05 16 33 H 0.18 2.35 6.54 -52.49 -0.34 2.01 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.16 1.63 7.80 -52.48 -0.41 1.23 16 38 H 0.37 8.49 6.63 -40.82 -0.27 8.22 16 39 H 0.26 7.29 6.77 -40.82 -0.28 7.01 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -30.61 329.74 -6.05 -36.66 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.27 Total: 12.05 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.68 Total: -3.88 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.93 Total: -59.83 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.09 Total: 19.45 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.61 -6.05 -36.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665782122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.066 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds