Wall clock time and date at job start Tue Mar 31 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21520 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.48137 * 119.99951 * 179.97438 * 7 6 5 10 10 C 1.39765 * 121.14822 * 359.72358 * 9 7 6 11 11 N 1.31891 * 119.65967 * 179.75565 * 10 9 7 12 12 N 1.28282 * 122.32242 * 0.53688 * 11 10 9 13 13 C 1.31879 * 122.52547 * 359.72259 * 12 11 10 14 14 C 1.50697 * 120.01660 * 180.02562 * 13 12 11 15 15 C 1.38542 * 119.96642 * 359.97438 * 13 12 11 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08000 * 120.16932 * 359.97438 * 10 9 7 34 34 H 1.09007 * 109.47267 * 269.97416 * 14 13 12 35 35 H 1.08993 * 109.47551 * 29.97140 * 14 13 12 36 36 H 1.08997 * 109.47609 * 149.97664 * 14 13 12 37 37 H 1.08010 * 121.09015 * 179.97438 * 15 13 12 38 38 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1648 2.1467 -0.2596 9 6 5.8893 4.4509 0.0336 10 6 5.0141 5.5235 0.2257 11 7 5.4950 6.7469 0.3340 12 7 6.7504 6.9995 0.2594 13 6 7.6537 6.0566 0.0746 14 6 9.1148 6.4172 -0.0039 15 6 7.2588 4.7341 -0.0464 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.5658 5.5007 2.2897 23 1 -2.6061 3.3542 1.8525 24 1 -2.0861 4.0083 4.1289 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 3.9499 5.3511 0.2888 34 1 9.3832 6.6226 -1.0402 35 1 9.3035 7.3029 0.6027 36 1 9.7146 5.5870 0.3690 37 1 7.9831 3.9474 -0.1985 38 1 2.2720 2.1231 1.9978 39 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665782122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:51 Heat of formation + Delta-G solvation = 1.087173 kcal Electronic energy + Delta-G solvation = -21336.099505 eV Core-core repulsion = 18085.395147 eV Total energy + Delta-G solvation = -3250.704358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41730 -40.69139 -38.48099 -35.71875 -35.03504 -34.62942 -34.05603 -31.35852 -29.58656 -29.31543 -26.53192 -25.33164 -24.94733 -23.81414 -21.94390 -21.41956 -19.53133 -19.19493 -18.73081 -17.47434 -16.94398 -16.92156 -16.52785 -16.35911 -15.78076 -15.56203 -15.44662 -14.76334 -14.65725 -14.49488 -14.29470 -13.84695 -13.66841 -13.26271 -13.22349 -12.73472 -12.61295 -12.20200 -12.10477 -11.97533 -11.83720 -11.68462 -11.53172 -11.44488 -11.18898 -10.91027 -10.89198 -10.78492 -10.25665 -9.07747 -8.26245 -5.22591 -0.86839 -0.30860 1.51997 1.62740 1.70729 1.83543 1.84609 2.42161 2.74889 2.84958 3.11448 3.31302 3.41063 3.49820 3.68530 3.72686 3.81053 4.08124 4.24790 4.28603 4.39489 4.48257 4.58836 4.64370 4.74039 4.76853 4.80174 4.96164 5.00918 5.02483 5.13282 5.24329 5.27891 5.46923 5.65690 5.74378 6.25310 6.58785 6.85585 7.14721 7.46337 8.04965 8.16694 9.24080 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.004736 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.010377 B = 5910.669485 C = 7241.643137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.168 3.832 4 H 0.059 0.941 5 C 0.120 3.880 6 N -0.700 5.700 7 C 0.563 3.437 8 O -0.560 6.560 9 C -0.135 4.135 10 C 0.065 3.935 11 N -0.264 5.264 12 N -0.256 5.256 13 C 0.069 3.931 14 C -0.098 4.098 15 C -0.051 4.051 16 N -0.740 5.740 17 C -0.305 4.305 18 H 0.073 0.927 19 C -0.101 4.101 20 N -0.980 5.980 21 Si 1.117 2.883 22 H -0.289 1.289 23 H -0.274 1.274 24 H -0.303 1.303 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.410 0.590 33 H 0.181 0.819 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.184 0.816 38 H 0.358 0.642 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.275 0.088 -10.908 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.060 3.940 4 H 0.077 0.923 5 C -0.004 4.004 6 N -0.351 5.351 7 C 0.348 3.652 8 O -0.439 6.439 9 C -0.149 4.149 10 C -0.101 4.101 11 N -0.103 5.103 12 N -0.099 5.099 13 C -0.076 4.076 14 C -0.156 4.156 15 C -0.081 4.081 16 N -0.383 5.383 17 C -0.436 4.436 18 H 0.091 0.909 19 C -0.292 4.292 20 N -0.629 5.629 21 Si 0.944 3.056 22 H -0.216 1.216 23 H -0.199 1.199 24 H -0.231 1.231 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.248 0.752 33 H 0.198 0.802 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.201 0.799 38 H 0.191 0.809 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.258 1.866 -10.007 15.178 hybrid contribution 0.766 -2.087 -0.476 2.273 sum 12.025 -0.220 -10.483 15.954 Atomic orbital electron populations 1.21689 0.96020 1.00554 1.01760 1.21978 0.96625 0.97128 1.01206 1.20680 0.90775 0.93383 0.89201 0.92279 1.21731 0.94382 0.81860 1.02423 1.45915 1.06666 1.11413 1.71074 1.18020 0.82688 0.87511 0.76966 1.90746 1.56443 1.45857 1.50900 1.21231 0.96162 0.94545 1.02997 1.24679 1.02581 0.89347 0.93497 1.73022 1.07195 1.19887 1.10205 1.72776 0.96485 1.31844 1.08834 1.23587 1.00502 0.89748 0.93813 1.20893 0.84695 1.04725 1.05308 1.22800 0.95177 0.98678 0.91487 1.42606 1.15874 1.67328 1.12447 1.20243 0.93269 1.29812 1.00290 0.90948 1.26750 1.07893 1.01975 0.92629 1.70975 1.08649 1.49922 1.33355 0.82724 0.72017 0.75757 0.75066 1.21585 1.19918 1.23058 0.92827 0.93421 0.93295 0.90331 0.93577 0.92219 0.89142 0.75215 0.80238 0.87719 0.89373 0.87560 0.79900 0.80938 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.18 71.98 0.66 -4.02 16 2 C -0.13 -3.95 5.61 30.59 0.17 -3.78 16 3 C 0.17 5.61 2.59 44.99 0.12 5.73 16 4 H 0.06 1.98 8.08 -2.38 -0.02 1.96 16 5 C 0.12 3.55 5.23 86.38 0.45 4.01 16 6 N -0.70 -20.92 5.35 -465.69 -2.49 -23.41 16 7 C 0.56 16.91 7.80 86.87 0.68 17.59 16 8 O -0.56 -18.99 16.49 -3.78 -0.06 -19.05 16 9 C -0.14 -3.66 5.92 -19.83 -0.12 -3.78 16 10 C 0.06 1.86 10.84 85.05 0.92 2.79 16 11 N -0.26 -8.34 11.49 -56.53 -0.65 -8.99 16 12 N -0.26 -7.30 11.40 -47.70 -0.54 -7.84 16 13 C 0.07 1.48 6.86 42.62 0.29 1.77 16 14 C -0.10 -1.15 10.19 71.23 0.73 -0.42 16 15 C -0.05 -1.14 9.43 22.79 0.21 -0.92 16 16 N -0.74 -31.90 4.50 -322.94 -1.45 -33.35 16 17 C -0.30 -15.00 7.75 84.03 0.65 -14.35 16 18 H 0.07 3.49 7.32 -2.91 -0.02 3.46 16 19 C -0.10 -5.42 5.50 84.86 0.47 -4.95 16 20 N -0.98 -58.18 13.70 21.65 0.30 -57.88 16 21 Si 1.12 49.86 29.92 68.60 2.05 51.92 16 22 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.93 5.99 -2.38 -0.01 1.92 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.41 12.55 6.29 -92.71 -0.58 11.96 16 33 H 0.18 4.90 6.54 -2.91 -0.02 4.88 16 34 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 0.76 8.09 -2.39 -0.02 0.74 16 37 H 0.18 3.20 7.80 -2.91 -0.02 3.17 16 38 H 0.36 16.86 6.63 -92.71 -0.61 16.24 16 39 H 0.24 14.41 6.77 -92.71 -0.63 13.78 16 Total: -1.00 -66.46 329.74 2.41 -64.05 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.02 Total: 34.91 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.24 Total: -0.35 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -4.84 Total: -131.47 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.06 Total: -19.05 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.92 kcal Total: -66.46 2.41 -64.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665782122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.139 kcal (2) G-P(sol) polarization free energy of solvation -66.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds