Wall clock time and date at job start Tue Mar 31 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 H 1.09000 * 109.47145 * 55.00233 * 3 2 1 5 5 C 1.53006 * 109.47102 * 175.00470 * 3 2 1 6 6 N 1.46504 * 109.46883 * 175.00371 * 5 3 2 7 7 C 1.34775 * 119.99531 * 179.97438 * 6 5 3 8 8 O 1.21522 * 120.00278 * 0.02562 * 7 6 5 9 9 C 1.48141 * 120.00029 * 179.97438 * 7 6 5 10 10 C 1.39770 * 121.14178 * 359.71681 * 9 7 6 11 11 N 1.31900 * 119.64959 * 179.75693 * 10 9 7 12 12 N 1.28269 * 122.33056 * 0.54681 * 11 10 9 13 13 C 1.31885 * 122.52180 * 359.71000 * 12 11 10 14 14 C 1.50705 * 120.01544 * 180.02562 * 13 12 11 15 15 C 1.38547 * 119.96934 * 0.02562 * 13 12 11 16 16 N 1.46498 * 109.47308 * 295.00087 * 3 2 1 17 17 C 1.36944 * 119.99673 * 85.00130 * 16 3 2 18 18 H 1.07995 * 119.99746 * 359.97438 * 17 16 3 19 19 C 1.38811 * 119.99915 * 179.97438 * 17 16 3 20 20 N 1.31621 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00196 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46909 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47335 * 120.00242 * 21 19 17 24 24 H 1.48497 * 109.47043 * 240.00246 * 21 19 17 25 25 H 1.09002 * 109.46804 * 299.99482 * 1 2 3 26 26 H 1.08992 * 109.47145 * 59.99984 * 1 2 3 27 27 H 1.09007 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46804 * 240.00518 * 2 1 3 29 29 H 1.08997 * 109.47615 * 120.00548 * 2 1 3 30 30 H 1.09001 * 109.47002 * 294.99868 * 5 3 2 31 31 H 1.08993 * 109.46955 * 55.00306 * 5 3 2 32 32 H 0.96992 * 119.99966 * 359.97438 * 6 5 3 33 33 H 1.07999 * 120.17294 * 0.02562 * 10 9 7 34 34 H 1.09007 * 109.46998 * 269.98377 * 14 13 12 35 35 H 1.08997 * 109.47235 * 29.98549 * 14 13 12 36 36 H 1.09001 * 109.46910 * 149.98740 * 14 13 12 37 37 H 1.08004 * 121.08882 * 179.97438 * 15 13 12 38 38 H 0.96995 * 120.00562 * 265.00143 * 16 3 2 39 39 H 0.97002 * 120.00013 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0867 8 8 6.1649 2.1466 0.2584 9 6 5.8895 4.4509 -0.0348 10 6 5.0152 5.5220 -0.2395 11 7 5.4954 6.7464 -0.3388 12 7 6.7507 6.9991 -0.2644 13 6 7.6539 6.0563 -0.0779 14 6 9.1150 6.4171 0.0014 15 6 7.2589 4.7341 0.0451 16 7 1.6524 2.0975 -1.2518 17 6 0.4155 2.6735 -1.3687 18 1 -0.2743 2.6445 -0.5382 19 6 0.0484 3.2946 -2.5545 20 7 0.8890 3.3295 -3.5668 21 14 -1.6390 4.0797 -2.7143 22 1 -2.3887 3.9047 -1.4444 23 1 -1.4857 5.5284 -3.0024 24 1 -2.3840 3.4307 -3.8229 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8500 1.0377 1.0959 31 1 3.9953 0.8312 -0.6661 32 1 3.4410 3.5483 -0.1315 33 1 3.9516 5.3484 -0.3117 34 1 9.5521 6.3838 -0.9966 35 1 9.2194 7.4220 0.4105 36 1 9.6302 5.7063 0.6475 37 1 7.9831 3.9475 0.1979 38 1 2.2718 2.1232 -1.9978 39 1 0.6326 3.7638 -4.3954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665782123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:57 Heat of formation + Delta-G solvation = 21.564794 kcal Electronic energy + Delta-G solvation = -21289.331574 eV Core-core repulsion = 18039.515193 eV Total energy + Delta-G solvation = -3249.816382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.29761 -39.36620 -36.83978 -34.36660 -33.82825 -33.19126 -32.39436 -29.84428 -28.46950 -28.20614 -25.31043 -23.98641 -23.52678 -22.40270 -20.53950 -19.96145 -18.11666 -17.66360 -17.18300 -16.30334 -15.66116 -15.55847 -15.27245 -14.72649 -14.52149 -14.05112 -13.67893 -13.54511 -13.25490 -13.16803 -13.06474 -12.74740 -12.65410 -12.26133 -11.54636 -11.10205 -11.03690 -10.94384 -10.83704 -10.54003 -10.37517 -10.30060 -10.26203 -10.05768 -9.88593 -9.64607 -9.60378 -9.03660 -8.88886 -7.11985 -5.88368 -3.18549 0.25712 0.73413 2.76388 3.11856 3.36644 3.42969 3.45432 3.55412 3.83271 4.24714 4.35511 4.48743 4.56869 4.67309 5.00282 5.15250 5.27454 5.28878 5.35707 5.46546 5.55596 5.67168 5.78943 5.80891 5.86590 5.87956 6.01478 6.03685 6.33276 6.39326 6.48232 6.52640 6.69159 6.93156 7.18387 7.60040 7.61253 8.18782 8.28665 8.55473 9.40988 9.94059 10.29768 11.33293 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.004731 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.497932 B = 5917.252930 C = 7257.825981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.056 0.944 5 C 0.113 3.887 6 N -0.698 5.698 7 C 0.558 3.442 8 O -0.539 6.539 9 C -0.123 4.123 10 C 0.070 3.930 11 N -0.236 5.236 12 N -0.233 5.233 13 C 0.060 3.940 14 C -0.099 4.099 15 C -0.062 4.062 16 N -0.723 5.723 17 C -0.242 4.242 18 H 0.075 0.925 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.412 0.588 33 H 0.181 0.819 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.385 0.615 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.441 0.716 8.701 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.074 0.926 5 C -0.011 4.011 6 N -0.349 5.349 7 C 0.342 3.658 8 O -0.418 6.418 9 C -0.137 4.137 10 C -0.095 4.095 11 N -0.076 5.076 12 N -0.077 5.077 13 C -0.084 4.084 14 C -0.157 4.157 15 C -0.092 4.092 16 N -0.365 5.365 17 C -0.372 4.372 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.249 0.751 33 H 0.198 0.802 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.179 0.821 38 H 0.219 0.781 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.443 1.739 8.628 14.436 hybrid contribution -0.940 -0.888 -0.425 1.361 sum 10.503 0.851 8.203 13.354 Atomic orbital electron populations 1.21770 0.95620 0.99709 1.03304 1.22064 0.97076 0.98207 1.00087 1.20586 0.89566 0.93075 0.91604 0.92645 1.21800 0.96006 0.81715 1.01552 1.45906 1.06463 1.11565 1.70985 1.17875 0.83072 0.87081 0.77781 1.90760 1.56086 1.45083 1.49834 1.21331 0.95156 0.95741 1.01472 1.24701 1.02421 0.89341 0.93034 1.73078 1.06133 1.19266 1.09086 1.72832 0.96486 1.30622 1.07726 1.22932 0.98966 0.90461 0.96050 1.20692 0.87725 1.03641 1.03681 1.22455 0.95682 0.97771 0.93296 1.42482 1.16899 1.65904 1.11227 1.19242 0.91955 1.27919 0.98123 0.90749 1.24737 0.98071 1.01386 0.96312 1.69663 1.35188 1.48692 1.04026 0.86201 0.84018 0.78956 0.77503 1.20501 1.21794 1.21900 0.94075 0.89630 0.94820 0.92465 0.93792 0.91333 0.91314 0.75055 0.80224 0.89655 0.89765 0.90074 0.82148 0.78111 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.18 37.16 0.34 -2.15 16 2 C -0.13 -2.16 5.61 -26.73 -0.15 -2.31 16 3 C 0.16 2.79 2.59 -67.93 -0.18 2.61 16 4 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 5 C 0.11 1.76 5.23 -4.04 -0.02 1.74 16 6 N -0.70 -10.71 5.35 -61.15 -0.33 -11.04 16 7 C 0.56 8.68 7.80 -12.20 -0.10 8.59 16 8 O -0.54 -9.59 16.49 5.35 0.09 -9.50 16 9 C -0.12 -1.71 5.92 -104.57 -0.62 -2.33 16 10 C 0.07 1.00 10.84 -16.95 -0.18 0.82 16 11 N -0.24 -3.70 11.49 30.78 0.35 -3.34 16 12 N -0.23 -3.39 11.40 33.58 0.38 -3.01 16 13 C 0.06 0.71 6.86 -82.45 -0.57 0.14 16 14 C -0.10 -0.74 10.19 36.01 0.37 -0.37 16 15 C -0.06 -0.75 9.43 -38.78 -0.37 -1.12 16 16 N -0.72 -15.61 4.51 -53.43 -0.24 -15.85 16 17 C -0.24 -5.89 7.75 -15.06 -0.12 -6.01 16 18 H 0.07 1.78 7.32 -52.49 -0.38 1.40 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -26.09 13.06 55.49 0.72 -25.37 16 21 Si 0.90 21.09 29.55 -169.99 -5.02 16.06 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.73 5.99 -51.93 -0.31 1.42 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.41 6.31 6.29 -40.82 -0.26 6.05 16 33 H 0.18 2.37 6.54 -52.49 -0.34 2.02 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.16 1.65 7.80 -52.48 -0.41 1.24 16 38 H 0.38 9.16 7.80 -40.82 -0.32 8.84 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -29.80 331.44 -6.11 -35.91 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.38 Total: 11.86 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.68 Total: -0.71 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.89 Total: -58.61 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.80 -6.11 -35.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665782123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.471 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds