Wall clock time and date at job start Tue Mar 31 2020 01:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 H 1.09000 * 109.47145 * 55.00233 * 3 2 1 5 5 C 1.53006 * 109.47102 * 175.00470 * 3 2 1 6 6 N 1.46504 * 109.46883 * 175.00371 * 5 3 2 7 7 C 1.34775 * 119.99531 * 179.97438 * 6 5 3 8 8 O 1.21522 * 120.00278 * 0.02562 * 7 6 5 9 9 C 1.48141 * 120.00029 * 179.97438 * 7 6 5 10 10 C 1.39770 * 121.14178 * 359.71681 * 9 7 6 11 11 N 1.31900 * 119.64959 * 179.75693 * 10 9 7 12 12 N 1.28269 * 122.33056 * 0.54681 * 11 10 9 13 13 C 1.31885 * 122.52180 * 359.71000 * 12 11 10 14 14 C 1.50705 * 120.01544 * 180.02562 * 13 12 11 15 15 C 1.38547 * 119.96934 * 0.02562 * 13 12 11 16 16 N 1.46498 * 109.47308 * 295.00087 * 3 2 1 17 17 C 1.36944 * 119.99673 * 85.00130 * 16 3 2 18 18 H 1.07995 * 119.99746 * 359.97438 * 17 16 3 19 19 C 1.38811 * 119.99915 * 179.97438 * 17 16 3 20 20 N 1.31621 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00196 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46909 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47335 * 120.00242 * 21 19 17 24 24 H 1.48497 * 109.47043 * 240.00246 * 21 19 17 25 25 H 1.09002 * 109.46804 * 299.99482 * 1 2 3 26 26 H 1.08992 * 109.47145 * 59.99984 * 1 2 3 27 27 H 1.09007 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46804 * 240.00518 * 2 1 3 29 29 H 1.08997 * 109.47615 * 120.00548 * 2 1 3 30 30 H 1.09001 * 109.47002 * 294.99868 * 5 3 2 31 31 H 1.08993 * 109.46955 * 55.00306 * 5 3 2 32 32 H 0.96992 * 119.99966 * 359.97438 * 6 5 3 33 33 H 1.07999 * 120.17294 * 0.02562 * 10 9 7 34 34 H 1.09007 * 109.46998 * 269.98377 * 14 13 12 35 35 H 1.08997 * 109.47235 * 29.98549 * 14 13 12 36 36 H 1.09001 * 109.46910 * 149.98740 * 14 13 12 37 37 H 1.08004 * 121.08882 * 179.97438 * 15 13 12 38 38 H 0.96995 * 120.00562 * 265.00143 * 16 3 2 39 39 H 0.97002 * 120.00013 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0867 8 8 6.1649 2.1466 0.2584 9 6 5.8895 4.4509 -0.0348 10 6 5.0152 5.5220 -0.2395 11 7 5.4954 6.7464 -0.3388 12 7 6.7507 6.9991 -0.2644 13 6 7.6539 6.0563 -0.0779 14 6 9.1150 6.4171 0.0014 15 6 7.2589 4.7341 0.0451 16 7 1.6524 2.0975 -1.2518 17 6 0.4155 2.6735 -1.3687 18 1 -0.2743 2.6445 -0.5382 19 6 0.0484 3.2946 -2.5545 20 7 0.8890 3.3295 -3.5668 21 14 -1.6390 4.0797 -2.7143 22 1 -2.3887 3.9047 -1.4444 23 1 -1.4857 5.5284 -3.0024 24 1 -2.3840 3.4307 -3.8229 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8500 1.0377 1.0959 31 1 3.9953 0.8312 -0.6661 32 1 3.4410 3.5483 -0.1315 33 1 3.9516 5.3484 -0.3117 34 1 9.5521 6.3838 -0.9966 35 1 9.2194 7.4220 0.4105 36 1 9.6302 5.7063 0.6475 37 1 7.9831 3.9475 0.1979 38 1 2.2718 2.1232 -1.9978 39 1 0.6326 3.7638 -4.3954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665782123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:55 Heat of formation + Delta-G solvation = 0.875750 kcal Electronic energy + Delta-G solvation = -21290.228719 eV Core-core repulsion = 18039.515193 eV Total energy + Delta-G solvation = -3250.713526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.36494 -40.61016 -38.31485 -35.57293 -34.94966 -34.47422 -33.94173 -31.49887 -29.66042 -29.28227 -26.55713 -25.36024 -24.89525 -23.71372 -21.81215 -21.31256 -19.45895 -18.98285 -18.60380 -17.37970 -17.03114 -16.81602 -16.56630 -16.04239 -15.77350 -15.60137 -15.07736 -14.71039 -14.54861 -14.44104 -14.16031 -13.85721 -13.74415 -13.22839 -12.99199 -12.82028 -12.78593 -12.37069 -12.12799 -12.06380 -11.88521 -11.66628 -11.56164 -11.39290 -11.31985 -10.92001 -10.85110 -10.73995 -10.16088 -8.97667 -7.88174 -5.14825 -0.81586 -0.26286 1.49441 1.52563 1.58632 1.59390 1.93002 2.47400 2.59952 2.89560 3.17601 3.36597 3.45813 3.49404 3.73369 3.88678 3.93657 4.13038 4.31870 4.38455 4.49024 4.57688 4.64190 4.73829 4.76180 4.84379 4.88211 4.99741 5.09690 5.11971 5.21876 5.26969 5.36835 5.56597 5.63295 5.74243 6.32545 6.34665 6.94297 7.41152 7.50681 8.12490 8.36494 9.34732 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.004731 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.497932 B = 5917.252930 C = 7257.825981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.163 3.837 4 H 0.062 0.938 5 C 0.120 3.880 6 N -0.698 5.698 7 C 0.562 3.438 8 O -0.562 6.562 9 C -0.134 4.134 10 C 0.066 3.934 11 N -0.265 5.265 12 N -0.258 5.258 13 C 0.068 3.932 14 C -0.098 4.098 15 C -0.052 4.052 16 N -0.729 5.729 17 C -0.214 4.214 18 H 0.082 0.918 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.301 1.301 24 H -0.303 1.303 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.411 0.589 33 H 0.183 0.817 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.183 0.817 38 H 0.373 0.627 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.518 0.030 10.508 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.080 0.920 5 C -0.003 4.003 6 N -0.348 5.348 7 C 0.348 3.652 8 O -0.442 6.442 9 C -0.148 4.148 10 C -0.100 4.100 11 N -0.104 5.104 12 N -0.100 5.100 13 C -0.078 4.078 14 C -0.156 4.156 15 C -0.082 4.082 16 N -0.369 5.369 17 C -0.346 4.346 18 H 0.100 0.900 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.786 3.214 22 H -0.189 1.189 23 H -0.228 1.228 24 H -0.231 1.231 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.249 0.751 33 H 0.200 0.800 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.200 0.800 38 H 0.205 0.795 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.501 1.049 10.492 16.354 hybrid contribution -1.184 -0.750 -0.882 1.656 sum 11.317 0.299 9.611 14.850 Atomic orbital electron populations 1.21706 0.96092 1.00567 1.01794 1.21984 0.96543 0.97241 1.01211 1.20756 0.90808 0.93463 0.89579 0.92018 1.21725 0.94504 0.81808 1.02303 1.45904 1.06610 1.11506 1.70815 1.18005 0.82764 0.87441 0.77026 1.90743 1.56479 1.45856 1.51084 1.21249 0.96124 0.94662 1.02781 1.24712 1.02691 0.89269 0.93317 1.73011 1.07161 1.19932 1.10326 1.72766 0.96514 1.31922 1.08847 1.23574 1.00464 0.89802 0.93924 1.20888 0.84788 1.04710 1.05210 1.22790 0.95212 0.98575 0.91667 1.42605 1.15817 1.66095 1.12421 1.19529 0.92525 1.25099 0.97441 0.90047 1.25314 1.00676 1.03497 0.96718 1.69796 1.36716 1.50970 1.04349 0.85347 0.81268 0.77394 0.77437 1.18933 1.22832 1.23127 0.93181 0.93324 0.92938 0.93511 0.90433 0.89214 0.92279 0.75093 0.80038 0.88170 0.89241 0.87393 0.79960 0.79530 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.18 71.98 0.66 -3.94 16 2 C -0.13 -3.89 5.61 30.59 0.17 -3.71 16 3 C 0.16 5.32 2.59 44.99 0.12 5.43 16 4 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 5 C 0.12 3.55 5.23 86.38 0.45 4.00 16 6 N -0.70 -20.83 5.35 -465.67 -2.49 -23.32 16 7 C 0.56 16.96 7.80 86.87 0.68 17.64 16 8 O -0.56 -19.15 16.49 -3.79 -0.06 -19.22 16 9 C -0.13 -3.65 5.92 -19.83 -0.12 -3.76 16 10 C 0.07 1.90 10.84 85.05 0.92 2.82 16 11 N -0.27 -8.38 11.49 -56.52 -0.65 -9.03 16 12 N -0.26 -7.36 11.40 -47.68 -0.54 -7.90 16 13 C 0.07 1.47 6.86 42.63 0.29 1.76 16 14 C -0.10 -1.16 10.19 71.24 0.73 -0.44 16 15 C -0.05 -1.17 9.43 22.79 0.21 -0.96 16 16 N -0.73 -31.22 4.51 -322.94 -1.46 -32.67 16 17 C -0.21 -10.35 7.75 84.03 0.65 -9.70 16 18 H 0.08 3.79 7.32 -2.91 -0.02 3.77 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.97 -55.73 13.06 21.65 0.28 -55.44 16 21 Si 0.95 43.91 29.55 68.60 2.03 45.93 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.91 5.99 -2.39 -0.01 1.90 16 27 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.41 12.48 6.29 -92.71 -0.58 11.90 16 33 H 0.18 4.93 6.54 -2.91 -0.02 4.91 16 34 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.74 8.09 -2.39 -0.02 0.72 16 37 H 0.18 3.23 7.80 -2.91 -0.02 3.21 16 38 H 0.37 17.91 7.80 -92.71 -0.72 17.19 16 39 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -64.41 331.44 2.12 -62.29 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.23 Total: 33.44 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.24 Total: 5.92 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -4.86 Total: -128.36 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.06 Total: -19.22 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.41 2.12 -62.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665782123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.165 kcal (2) G-P(sol) polarization free energy of solvation -64.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds