Wall clock time and date at job start Tue Mar 31 2020 00:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47324 * 2 1 4 4 N 1.30452 * 125.98874 * 270.02930 * 3 2 1 5 5 N 1.39939 * 108.89510 * 179.72290 * 4 3 2 6 6 H 0.97000 * 125.75298 * 180.27279 * 5 4 3 7 7 C 1.34261 * 108.49051 * 0.42542 * 5 4 3 8 8 C 1.38041 * 107.41638 * 359.58619 * 7 5 4 9 9 C 1.47429 * 126.41248 * 180.26510 * 8 7 5 10 10 O 1.21605 * 120.00015 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00225 * 359.96764 * 9 8 7 12 12 C 1.46494 * 120.00113 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.46854 * 180.02562 * 12 11 9 14 14 C 1.31003 * 119.99609 * 127.16402 * 13 12 11 15 15 C 1.50705 * 120.00246 * 7.55495 * 14 13 12 16 16 N 1.46493 * 109.46983 * 127.01020 * 15 14 13 17 17 C 1.36939 * 120.00111 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99704 * 359.97438 * 17 16 15 19 19 C 1.38804 * 120.00287 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00249 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46886 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47460 * 119.99936 * 21 19 17 24 24 H 1.48501 * 109.47083 * 240.00027 * 21 19 17 25 25 H 1.08999 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46537 * 299.99910 * 1 2 3 27 27 H 1.08992 * 109.47205 * 59.99490 * 1 2 3 28 28 H 1.08999 * 109.46537 * 240.00089 * 2 1 3 29 29 H 1.09001 * 109.47025 * 120.00565 * 2 1 3 30 30 H 1.07998 * 126.28730 * 179.84232 * 7 5 4 31 31 H 0.97004 * 119.99445 * 0.02562 * 11 9 8 32 32 H 1.08998 * 109.47440 * 300.00641 * 12 11 9 33 33 H 1.09005 * 109.46972 * 60.01186 * 12 11 9 34 34 H 1.07998 * 120.00338 * 307.15738 * 13 12 11 35 35 H 1.07993 * 119.99639 * 187.56515 * 14 13 12 36 36 H 1.09000 * 109.46927 * 247.01230 * 15 14 13 37 37 H 1.09007 * 109.46660 * 7.00739 * 15 14 13 38 38 H 0.97000 * 120.00490 * 359.97438 * 16 15 14 39 39 H 0.96997 * 119.99728 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2875 2.1437 -1.0555 5 7 2.7275 3.4068 -0.6442 6 1 2.9801 4.1374 -1.2300 7 6 2.7443 3.4356 0.6980 8 6 2.3092 2.2035 1.1432 9 6 2.1611 1.7831 2.5485 10 8 1.7652 0.6634 2.8097 11 7 2.4646 2.6398 3.5438 12 6 2.3168 2.2223 4.9402 13 6 2.7177 3.3560 5.8485 14 6 1.9018 3.7607 6.7902 15 6 0.6401 2.9881 7.0773 16 7 0.5794 2.6653 8.5049 17 6 -0.4844 1.9615 9.0032 18 1 -1.2789 1.6449 8.3437 19 6 -0.5416 1.6551 10.3558 20 7 0.4269 2.0406 11.1594 21 14 -1.9931 0.6957 11.0356 22 1 -2.9395 0.3837 9.9346 23 1 -1.5089 -0.5684 11.6458 24 1 -2.6852 1.5098 12.0669 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.0396 4.2708 1.3157 31 1 2.7801 3.5331 3.3354 32 1 1.2778 1.9540 5.1312 33 1 2.9558 1.3600 5.1311 34 1 3.6777 3.8347 5.7233 35 1 2.1332 4.6480 7.3605 36 1 -0.2255 3.5916 6.8041 37 1 0.6383 2.0662 6.4958 38 1 1.2932 2.9493 9.0972 39 1 0.3871 1.8262 12.1046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668906027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:05 Heat of formation + Delta-G solvation = 62.352133 kcal Electronic energy + Delta-G solvation = -20484.040403 eV Core-core repulsion = 17235.992693 eV Total energy + Delta-G solvation = -3248.047710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.69905 -39.14712 -36.52021 -34.71241 -34.16749 -32.86248 -30.90550 -30.53911 -30.12333 -26.57046 -24.93206 -24.18943 -23.05440 -22.47246 -20.49147 -19.86103 -19.12793 -18.11718 -16.97456 -16.37038 -16.12337 -15.57525 -15.04665 -14.92552 -14.51377 -14.23016 -14.13466 -13.66469 -13.50835 -13.18682 -13.12197 -12.61357 -12.48256 -12.36687 -11.72605 -11.63192 -11.37112 -10.95661 -10.94018 -10.79689 -10.40522 -9.99183 -9.90706 -9.81616 -9.75930 -9.21356 -9.07654 -8.95427 -8.56086 -6.90634 -5.75842 -3.04920 1.21342 1.94022 2.25416 2.39270 3.41028 3.45560 3.45862 3.51822 3.54081 4.19145 4.31298 4.62975 4.82458 4.96568 5.08422 5.16303 5.29920 5.30489 5.37690 5.48830 5.57669 5.72233 5.86614 5.92433 5.98890 6.00867 6.14064 6.25336 6.29637 6.38538 6.55893 6.60988 6.75022 6.88582 7.15648 7.22502 7.59235 7.72445 8.32310 8.42782 9.54233 10.10099 10.45313 11.47078 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024922 B = 0.002999 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.218914 B = 9335.747073 C =10180.061838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.140 3.860 4 N -0.300 5.300 5 N -0.463 5.463 6 H 0.443 0.557 7 C 0.102 3.898 8 C -0.282 4.282 9 C 0.588 3.412 10 O -0.536 6.536 11 N -0.723 5.723 12 C 0.143 3.857 13 C -0.200 4.200 14 C -0.109 4.109 15 C 0.161 3.839 16 N -0.728 5.728 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.186 0.814 31 H 0.394 0.606 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.338 5.350 -24.302 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.029 4.029 4 N -0.123 5.123 5 N -0.167 5.167 6 H 0.288 0.712 7 C -0.051 4.051 8 C -0.297 4.297 9 C 0.375 3.625 10 O -0.413 6.413 11 N -0.374 5.374 12 C 0.021 3.979 13 C -0.219 4.219 14 C -0.129 4.129 15 C 0.035 3.965 16 N -0.372 5.372 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.219 1.219 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.203 0.797 31 H 0.227 0.773 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.218 0.782 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.891 4.455 -25.358 26.653 hybrid contribution -0.017 0.776 1.241 1.464 sum 6.874 5.231 -24.118 25.618 Atomic orbital electron populations 1.21621 0.93823 1.02266 1.02022 1.20154 0.96671 0.87922 1.04204 1.22521 0.94648 0.97060 0.88622 1.77181 1.22121 0.90493 1.22463 1.46105 1.51955 1.13227 1.05448 0.71232 1.23159 0.97394 0.98807 0.85714 1.20371 1.19006 0.95520 0.94785 1.17228 0.77210 0.84699 0.83367 1.90776 1.46394 1.20011 1.84108 1.45858 1.68649 1.16610 1.06251 1.20549 1.03193 0.96070 0.78132 1.22597 0.99369 1.00065 0.99868 1.23294 0.96042 0.97674 0.95857 1.20018 0.92592 0.95786 0.88147 1.42280 1.25967 1.66883 1.02097 1.19301 0.98922 1.26830 0.91998 0.90974 1.24758 0.98475 1.01582 0.96187 1.69679 1.33093 1.51410 1.04033 0.86090 0.81818 0.79370 0.78787 1.20437 1.21785 1.21865 0.91758 0.91990 0.93069 0.90664 0.87891 0.79726 0.77280 0.89252 0.91003 0.87139 0.86966 0.95454 0.94535 0.78182 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.90 37.16 0.37 -1.08 16 2 C -0.05 -0.55 5.97 -27.88 -0.17 -0.72 16 3 C 0.14 1.62 6.52 -82.02 -0.53 1.09 16 4 N -0.30 -3.23 12.63 33.89 0.43 -2.80 16 5 N -0.46 -3.22 7.29 30.85 0.22 -2.99 16 6 H 0.44 1.41 8.96 -182.72 -1.64 -0.23 16 7 C 0.10 0.70 11.52 -16.56 -0.19 0.51 16 8 C -0.28 -3.07 6.13 -105.07 -0.64 -3.71 16 9 C 0.59 7.77 7.81 -12.52 -0.10 7.67 16 10 O -0.54 -9.05 14.92 5.27 0.08 -8.97 16 11 N -0.72 -8.08 5.54 -62.56 -0.35 -8.42 16 12 C 0.14 1.98 5.76 -5.19 -0.03 1.95 16 13 C -0.20 -2.61 9.63 -36.02 -0.35 -2.95 16 14 C -0.11 -1.73 9.63 -36.02 -0.35 -2.07 16 15 C 0.16 3.26 6.35 -5.19 -0.03 3.23 16 16 N -0.73 -18.74 5.59 -61.09 -0.34 -19.09 16 17 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 21 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.10 1.27 6.55 -51.93 -0.34 0.93 16 30 H 0.19 0.45 7.46 -52.49 -0.39 0.06 16 31 H 0.39 3.01 7.39 -40.82 -0.30 2.70 16 32 H 0.09 1.46 5.30 -51.93 -0.28 1.18 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.76 5.29 -51.92 -0.27 0.48 16 38 H 0.38 10.34 7.66 -40.82 -0.31 10.03 16 39 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -35.58 334.31 -7.95 -43.53 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.46 Total: 7.39 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.27 Total: -3.58 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.69 Total: -61.10 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.58 -7.95 -43.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668906027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.884 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds