Wall clock time and date at job start Tue Mar 31 2020 00:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47324 * 2 1 4 4 N 1.30452 * 125.98874 * 270.02930 * 3 2 1 5 5 N 1.39939 * 108.89510 * 179.72290 * 4 3 2 6 6 H 0.97000 * 125.75298 * 180.27279 * 5 4 3 7 7 C 1.34261 * 108.49051 * 0.42542 * 5 4 3 8 8 C 1.38041 * 107.41638 * 359.58619 * 7 5 4 9 9 C 1.47429 * 126.41248 * 180.26510 * 8 7 5 10 10 O 1.21605 * 120.00015 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00225 * 359.96764 * 9 8 7 12 12 C 1.46494 * 120.00113 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.46854 * 180.02562 * 12 11 9 14 14 C 1.31003 * 119.99609 * 127.16402 * 13 12 11 15 15 C 1.50705 * 120.00246 * 7.55495 * 14 13 12 16 16 N 1.46493 * 109.46983 * 127.01020 * 15 14 13 17 17 C 1.36939 * 120.00111 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99704 * 359.97438 * 17 16 15 19 19 C 1.38804 * 120.00287 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00249 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46886 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47460 * 119.99936 * 21 19 17 24 24 H 1.48501 * 109.47083 * 240.00027 * 21 19 17 25 25 H 1.08999 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46537 * 299.99910 * 1 2 3 27 27 H 1.08992 * 109.47205 * 59.99490 * 1 2 3 28 28 H 1.08999 * 109.46537 * 240.00089 * 2 1 3 29 29 H 1.09001 * 109.47025 * 120.00565 * 2 1 3 30 30 H 1.07998 * 126.28730 * 179.84232 * 7 5 4 31 31 H 0.97004 * 119.99445 * 0.02562 * 11 9 8 32 32 H 1.08998 * 109.47440 * 300.00641 * 12 11 9 33 33 H 1.09005 * 109.46972 * 60.01186 * 12 11 9 34 34 H 1.07998 * 120.00338 * 307.15738 * 13 12 11 35 35 H 1.07993 * 119.99639 * 187.56515 * 14 13 12 36 36 H 1.09000 * 109.46927 * 247.01230 * 15 14 13 37 37 H 1.09007 * 109.46660 * 7.00739 * 15 14 13 38 38 H 0.97000 * 120.00490 * 359.97438 * 16 15 14 39 39 H 0.96997 * 119.99728 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2875 2.1437 -1.0555 5 7 2.7275 3.4068 -0.6442 6 1 2.9801 4.1374 -1.2300 7 6 2.7443 3.4356 0.6980 8 6 2.3092 2.2035 1.1432 9 6 2.1611 1.7831 2.5485 10 8 1.7652 0.6634 2.8097 11 7 2.4646 2.6398 3.5438 12 6 2.3168 2.2223 4.9402 13 6 2.7177 3.3560 5.8485 14 6 1.9018 3.7607 6.7902 15 6 0.6401 2.9881 7.0773 16 7 0.5794 2.6653 8.5049 17 6 -0.4844 1.9615 9.0032 18 1 -1.2789 1.6449 8.3437 19 6 -0.5416 1.6551 10.3558 20 7 0.4269 2.0406 11.1594 21 14 -1.9931 0.6957 11.0356 22 1 -2.9395 0.3837 9.9346 23 1 -1.5089 -0.5684 11.6458 24 1 -2.6852 1.5098 12.0669 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.0396 4.2708 1.3157 31 1 2.7801 3.5331 3.3354 32 1 1.2778 1.9540 5.1312 33 1 2.9558 1.3600 5.1311 34 1 3.6777 3.8347 5.7233 35 1 2.1332 4.6480 7.3605 36 1 -0.2255 3.5916 6.8041 37 1 0.6383 2.0662 6.4958 38 1 1.2932 2.9493 9.0972 39 1 0.3871 1.8262 12.1046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668906027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:03 Heat of formation + Delta-G solvation = 35.086679 kcal Electronic energy + Delta-G solvation = -20485.222722 eV Core-core repulsion = 17235.992693 eV Total energy + Delta-G solvation = -3249.230029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.42286 -40.17385 -37.89515 -36.10487 -35.17225 -34.34686 -32.46847 -31.29578 -31.27787 -28.00460 -26.46591 -25.00536 -24.38114 -23.88350 -21.37433 -20.78101 -20.10220 -19.39860 -18.59954 -17.41187 -17.33267 -16.48547 -16.47892 -15.94747 -15.69089 -15.43946 -15.18857 -15.02637 -14.97579 -14.61400 -14.17343 -13.90100 -13.78958 -13.28886 -13.20696 -12.92395 -12.71907 -12.45165 -12.16625 -12.12057 -11.89483 -11.80007 -11.61277 -11.02680 -10.90886 -10.54760 -10.29390 -9.98542 -9.68085 -8.97481 -7.97003 -5.26116 0.56733 1.08129 1.10753 1.47604 1.48479 1.58935 1.82993 2.47463 2.47884 2.57592 3.36774 3.46646 3.75767 3.85628 4.15963 4.18717 4.20264 4.24360 4.40427 4.42268 4.46372 4.55374 4.68499 4.70198 4.93894 4.95089 5.04116 5.12759 5.17046 5.27873 5.42683 5.47102 5.49786 5.63076 5.91383 6.26411 6.28741 6.49677 6.74305 7.32217 7.38754 8.06407 8.30914 9.26673 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024922 B = 0.002999 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.218914 B = 9335.747073 C =10180.061838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 C 0.123 3.877 4 N -0.324 5.324 5 N -0.446 5.446 6 H 0.462 0.538 7 C 0.140 3.860 8 C -0.320 4.320 9 C 0.586 3.414 10 O -0.584 6.584 11 N -0.706 5.706 12 C 0.144 3.856 13 C -0.156 4.156 14 C -0.136 4.136 15 C 0.160 3.840 16 N -0.742 5.742 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.074 4.074 20 N -0.968 5.968 21 Si 0.974 3.026 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.289 1.289 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.238 0.762 31 H 0.415 0.585 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.024 0.976 37 H 0.033 0.967 38 H 0.376 0.624 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.274 7.114 -25.877 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.045 4.045 4 N -0.147 5.147 5 N -0.152 5.152 6 H 0.310 0.690 7 C -0.015 4.015 8 C -0.335 4.335 9 C 0.375 3.625 10 O -0.465 6.465 11 N -0.358 5.358 12 C 0.020 3.980 13 C -0.175 4.175 14 C -0.155 4.155 15 C 0.034 3.966 16 N -0.384 5.384 17 C -0.380 4.380 18 H 0.091 0.909 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.216 1.216 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.254 0.746 31 H 0.252 0.748 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.171 0.829 35 H 0.143 0.857 36 H 0.041 0.959 37 H 0.050 0.950 38 H 0.208 0.792 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.837 6.278 -27.015 28.820 hybrid contribution -0.244 0.278 1.566 1.609 sum 7.592 6.556 -25.449 27.354 Atomic orbital electron populations 1.21555 0.93702 1.02680 1.01112 1.20094 0.96797 0.88425 1.03711 1.22600 0.95182 0.97352 0.89359 1.77116 1.23058 0.92002 1.22542 1.46151 1.50384 1.12609 1.06062 0.68967 1.23793 0.93690 0.98279 0.85704 1.20264 1.22412 0.97582 0.93205 1.17611 0.76244 0.84146 0.84534 1.90752 1.48655 1.22177 1.84906 1.45564 1.68175 1.17402 1.04653 1.20330 1.01269 0.96398 0.79985 1.22800 0.99653 0.97816 0.97183 1.23027 0.95187 0.98905 0.98426 1.20097 0.95171 0.96197 0.85107 1.42490 1.25019 1.66606 1.04323 1.19672 0.99597 1.26383 0.92372 0.90893 1.25581 1.01291 1.03174 0.96596 1.69819 1.34986 1.52989 1.04058 0.85064 0.78844 0.77688 0.78122 1.19230 1.21861 1.21627 0.90755 0.94240 0.92376 0.89467 0.89935 0.74622 0.74753 0.92172 0.92073 0.82919 0.85742 0.95861 0.94975 0.79217 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.90 71.98 0.71 -2.14 16 2 C -0.05 -1.15 5.97 29.85 0.18 -0.97 16 3 C 0.12 2.78 6.52 43.51 0.28 3.06 16 4 N -0.32 -6.44 12.63 -46.68 -0.59 -7.03 16 5 N -0.45 -4.69 7.29 -56.32 -0.41 -5.10 16 6 H 0.46 1.10 8.96 -213.42 -1.91 -0.81 16 7 C 0.14 1.36 11.52 84.27 0.97 2.33 16 8 C -0.32 -6.47 6.13 -20.15 -0.12 -6.60 16 9 C 0.59 15.17 7.81 86.66 0.68 15.85 16 10 O -0.58 -20.55 14.92 -4.05 -0.06 -20.61 16 11 N -0.71 -14.32 5.54 -470.10 -2.60 -16.92 16 12 C 0.14 3.84 5.76 85.64 0.49 4.33 16 13 C -0.16 -3.62 9.63 25.65 0.25 -3.37 16 14 C -0.14 -4.10 9.63 25.65 0.25 -3.86 16 15 C 0.16 6.52 6.35 85.64 0.54 7.06 16 16 N -0.74 -38.79 5.59 -347.18 -1.94 -40.73 16 17 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 18 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 19 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 20 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 21 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 2.19 6.55 -2.39 -0.02 2.17 16 30 H 0.24 -0.35 7.46 -2.91 -0.02 -0.37 16 31 H 0.42 4.63 7.39 -92.71 -0.68 3.94 16 32 H 0.06 2.00 5.30 -2.39 -0.01 1.99 16 33 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.03 1.36 5.29 -2.38 -0.01 1.35 16 38 H 0.38 20.59 7.66 -92.71 -0.71 19.88 16 39 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -80.48 334.31 0.03 -80.45 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -2.21 Total: 22.19 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 5.54 Total: -1.70 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -5.26 Total: -129.49 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.06 Total: -20.61 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -80.48 0.03 -80.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668906027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.536 kcal (2) G-P(sol) polarization free energy of solvation -80.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds