Wall clock time and date at job start Mon Mar 30 2020 23:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30862 * 125.41803 * 2 1 4 4 C 1.33319 * 109.68358 * 179.74685 * 3 2 1 5 5 C 1.36657 * 107.78731 * 0.38051 * 4 3 2 6 6 C 1.46762 * 126.84631 * 179.89654 * 5 4 3 7 7 O 1.21682 * 120.00613 * 185.01507 * 6 5 4 8 8 N 1.34782 * 119.99970 * 5.01328 * 6 5 4 9 9 C 1.46494 * 119.99939 * 174.97239 * 8 6 5 10 10 C 1.50702 * 109.47178 * 179.97438 * 9 8 6 11 11 C 1.30999 * 120.00284 * 127.18201 * 10 9 8 12 12 C 1.50701 * 119.99987 * 7.59042 * 11 10 9 13 13 N 1.46498 * 109.47128 * 127.18151 * 12 11 10 14 14 C 1.36939 * 119.99589 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00136 * 359.97438 * 14 13 12 16 16 C 1.38818 * 119.99758 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99847 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99820 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47287 * 90.00284 * 18 16 14 20 20 H 1.48504 * 109.47078 * 209.99802 * 18 16 14 21 21 H 1.48493 * 109.47654 * 329.99913 * 18 16 14 22 22 N 1.34497 * 125.41741 * 179.97438 * 2 1 3 23 23 C 1.46499 * 126.47489 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.46747 * 270.01914 * 1 2 3 25 25 H 1.08993 * 109.47446 * 30.01731 * 1 2 3 26 26 H 1.08999 * 109.47139 * 150.02504 * 1 2 3 27 27 H 1.08003 * 126.10236 * 180.27696 * 4 3 2 28 28 H 0.97001 * 119.99856 * 354.97441 * 8 6 5 29 29 H 1.08997 * 109.47219 * 60.00577 * 9 8 6 30 30 H 1.09002 * 109.47600 * 299.99901 * 9 8 6 31 31 H 1.08004 * 119.99727 * 307.46166 * 10 9 8 32 32 H 1.07999 * 120.00144 * 187.58274 * 11 10 9 33 33 H 1.08997 * 109.46901 * 247.18117 * 12 11 10 34 34 H 1.09007 * 109.46825 * 7.18063 * 12 11 10 35 35 H 0.96997 * 120.00393 * 359.97438 * 13 12 11 36 36 H 0.96999 * 119.99993 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.47187 * 273.08674 * 23 22 2 38 38 H 1.09000 * 109.46544 * 33.09244 * 23 22 2 39 39 H 1.09002 * 109.46907 * 153.08814 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7049 0.0055 5 6 3.5976 -0.6608 0.0006 6 6 4.8028 -1.4982 0.0018 7 8 4.7039 -2.7071 -0.0953 8 7 6.0194 -0.9282 0.1103 9 6 7.2144 -1.7681 0.2224 10 6 8.4359 -0.8920 0.3295 11 6 9.2818 -1.0652 1.3146 12 6 9.1289 -2.2442 2.2407 13 7 10.3950 -2.9779 2.3105 14 6 10.4964 -4.0952 3.0958 15 1 9.6432 -4.4352 3.6639 16 6 11.6960 -4.7907 3.1615 17 7 11.7936 -5.8643 3.9166 18 14 13.1718 -4.2021 2.1793 19 1 13.9648 -3.2512 2.9992 20 1 14.0188 -5.3658 1.8133 21 1 12.7054 -3.5216 0.9446 22 7 2.2864 -1.0961 0.0005 23 6 1.8311 -2.4885 0.0016 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 4.3978 1.3723 0.0111 28 1 6.1036 0.0381 0.1142 29 1 7.2980 -2.4008 -0.6612 30 1 7.1366 -2.3940 1.1114 31 1 8.6115 -0.1184 -0.4034 32 1 10.0890 -0.3631 1.4631 33 1 8.8579 -1.8917 3.2359 34 1 8.3471 -2.9035 1.8634 35 1 11.1612 -2.6727 1.7999 36 1 12.6317 -6.3505 3.9622 37 1 1.6660 -2.8159 1.0280 38 1 0.8997 -2.5666 -0.5591 39 1 2.5890 -3.1190 -0.4633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669001229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:44 Heat of formation + Delta-G solvation = 63.054734 kcal Electronic energy + Delta-G solvation = -20479.064816 eV Core-core repulsion = 17231.047573 eV Total energy + Delta-G solvation = -3248.017243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54665 -39.45633 -36.74502 -34.92341 -34.22129 -33.00112 -32.15345 -30.87554 -28.51580 -27.29696 -26.36733 -24.97682 -22.95907 -22.08581 -20.74105 -20.17167 -19.10602 -17.98415 -17.06378 -16.56618 -16.40327 -16.15704 -15.41976 -14.84930 -14.49310 -14.23780 -13.98926 -13.78804 -13.66629 -13.45074 -13.18026 -13.12809 -12.84283 -12.74526 -12.69398 -12.52573 -12.00694 -11.25365 -10.87769 -10.65149 -10.55925 -10.14525 -10.09447 -9.99891 -9.61754 -9.37720 -9.13881 -8.79489 -8.64020 -7.24557 -5.78282 -3.14679 1.04936 1.98047 2.33096 2.51745 3.15629 3.29856 3.36955 3.39470 3.44759 3.99335 4.38293 4.46270 4.57903 4.64282 4.83820 4.88006 4.96628 5.07760 5.13232 5.16101 5.26991 5.42170 5.49496 5.52614 5.60977 5.74002 5.85596 6.02859 6.14054 6.22340 6.40213 6.44047 6.71362 6.73015 6.98019 7.31009 7.61146 7.97137 8.01698 8.40242 9.18672 9.90566 10.09997 11.39888 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035700 B = 0.002808 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.115202 B = 9967.764694 C =10419.648874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.224 3.776 3 N -0.495 5.495 4 C 0.038 3.962 5 C -0.085 4.085 6 C 0.592 3.408 7 O -0.543 6.543 8 N -0.709 5.709 9 C 0.142 3.858 10 C -0.194 4.194 11 C -0.116 4.116 12 C 0.166 3.834 13 N -0.751 5.751 14 C -0.247 4.247 15 H 0.091 0.909 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.276 1.276 22 N -0.423 5.423 23 C 0.062 3.938 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.179 0.821 28 H 0.402 0.598 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.412 14.297 -10.568 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.038 4.038 3 N -0.214 5.214 4 C -0.116 4.116 5 C -0.202 4.202 6 C 0.378 3.622 7 O -0.422 6.422 8 N -0.360 5.360 9 C 0.020 3.980 10 C -0.214 4.214 11 C -0.135 4.135 12 C 0.039 3.961 13 N -0.397 5.397 14 C -0.377 4.377 15 H 0.109 0.891 16 C -0.191 4.191 17 N -0.580 5.580 18 Si 0.716 3.284 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.203 1.203 22 N -0.104 5.104 23 C -0.080 4.080 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.196 0.804 28 H 0.236 0.764 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.882 13.805 -10.453 27.904 hybrid contribution 1.653 -0.010 -0.652 1.777 sum -20.228 13.795 -11.105 26.885 Atomic orbital electron populations 1.20277 0.84353 1.04336 1.03968 1.23447 0.95956 0.81176 1.03195 1.70103 1.02132 1.28104 1.21018 1.22626 0.95230 0.91207 1.02571 1.20750 0.85369 0.94902 1.19182 1.16751 0.82100 0.86600 0.76741 1.90807 1.86689 1.14172 1.50510 1.45633 1.05354 1.10681 1.74343 1.20618 0.81098 0.92456 1.03784 1.22616 0.97177 1.02337 0.99243 1.23327 0.98182 0.97444 0.94591 1.19978 0.90185 0.89906 0.95990 1.42617 1.08969 1.31829 1.56254 1.19065 0.98494 1.00834 1.19265 0.89130 1.24684 0.97569 0.97271 0.99586 1.69703 1.26146 1.19435 1.42745 0.86520 0.83721 0.77919 0.80220 1.21025 1.21659 1.20265 1.45089 1.05136 1.08431 1.51695 1.22357 1.02488 0.78817 1.04354 0.89653 0.88766 0.90533 0.80375 0.76364 0.90625 0.88990 0.86764 0.86772 0.94475 0.93974 0.80518 0.92988 0.89979 0.89518 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.18 36.00 0.37 -0.01 16 2 C 0.22 2.20 7.88 -155.61 -1.23 0.97 16 3 N -0.49 -5.73 11.20 -10.58 -0.12 -5.85 16 4 C 0.04 0.41 11.37 -17.48 -0.20 0.21 16 5 C -0.09 -1.00 6.91 -82.14 -0.57 -1.57 16 6 C 0.59 7.82 7.78 -12.81 -0.10 7.72 16 7 O -0.54 -8.89 14.81 5.20 0.08 -8.81 16 8 N -0.71 -7.92 5.53 -62.78 -0.35 -8.26 16 9 C 0.14 1.87 5.76 -5.20 -0.03 1.84 16 10 C -0.19 -2.36 9.63 -36.02 -0.35 -2.71 16 11 C -0.12 -1.69 9.63 -36.03 -0.35 -2.04 16 12 C 0.17 3.17 6.34 -5.19 -0.03 3.14 16 13 N -0.75 -18.01 5.40 -61.08 -0.33 -18.34 16 14 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 15 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 16 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 17 N -0.93 -29.55 13.97 55.49 0.78 -28.78 16 18 Si 0.89 22.18 27.74 -169.99 -4.71 17.46 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 22 N -0.42 -4.44 3.17 -117.27 -0.37 -4.81 16 23 C 0.06 0.49 10.57 59.85 0.63 1.12 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.26 7.09 -51.93 -0.37 -0.11 16 27 H 0.18 1.31 7.46 -52.48 -0.39 0.92 16 28 H 0.40 3.27 7.41 -40.82 -0.30 2.97 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.42 5.30 -51.93 -0.28 1.14 16 31 H 0.11 1.11 8.06 -52.48 -0.42 0.68 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.83 5.30 -51.93 -0.28 0.55 16 35 H 0.36 8.41 5.52 -40.82 -0.23 8.19 16 36 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.41 7.11 -51.93 -0.37 0.04 16 39 H 0.11 1.10 6.24 -51.93 -0.32 0.78 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -36.23 329.20 -7.25 -43.48 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.08 Total: 7.48 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.10 Total: 1.47 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -0.39 Total: -66.05 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.23 -7.25 -43.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669001229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.537 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds