Wall clock time and date at job start Mon Mar 30 2020 23:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30862 * 125.41803 * 2 1 4 4 C 1.33319 * 109.68358 * 179.74685 * 3 2 1 5 5 C 1.36657 * 107.78731 * 0.38051 * 4 3 2 6 6 C 1.46762 * 126.84631 * 179.89654 * 5 4 3 7 7 O 1.21682 * 120.00613 * 185.01507 * 6 5 4 8 8 N 1.34782 * 119.99970 * 5.01328 * 6 5 4 9 9 C 1.46494 * 119.99939 * 174.97239 * 8 6 5 10 10 C 1.50702 * 109.47178 * 179.97438 * 9 8 6 11 11 C 1.30999 * 120.00284 * 127.18201 * 10 9 8 12 12 C 1.50701 * 119.99987 * 7.59042 * 11 10 9 13 13 N 1.46498 * 109.47128 * 127.18151 * 12 11 10 14 14 C 1.36939 * 119.99589 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00136 * 359.97438 * 14 13 12 16 16 C 1.38818 * 119.99758 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99847 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99820 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47287 * 90.00284 * 18 16 14 20 20 H 1.48504 * 109.47078 * 209.99802 * 18 16 14 21 21 H 1.48493 * 109.47654 * 329.99913 * 18 16 14 22 22 N 1.34497 * 125.41741 * 179.97438 * 2 1 3 23 23 C 1.46499 * 126.47489 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.46747 * 270.01914 * 1 2 3 25 25 H 1.08993 * 109.47446 * 30.01731 * 1 2 3 26 26 H 1.08999 * 109.47139 * 150.02504 * 1 2 3 27 27 H 1.08003 * 126.10236 * 180.27696 * 4 3 2 28 28 H 0.97001 * 119.99856 * 354.97441 * 8 6 5 29 29 H 1.08997 * 109.47219 * 60.00577 * 9 8 6 30 30 H 1.09002 * 109.47600 * 299.99901 * 9 8 6 31 31 H 1.08004 * 119.99727 * 307.46166 * 10 9 8 32 32 H 1.07999 * 120.00144 * 187.58274 * 11 10 9 33 33 H 1.08997 * 109.46901 * 247.18117 * 12 11 10 34 34 H 1.09007 * 109.46825 * 7.18063 * 12 11 10 35 35 H 0.96997 * 120.00393 * 359.97438 * 13 12 11 36 36 H 0.96999 * 119.99993 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.47187 * 273.08674 * 23 22 2 38 38 H 1.09000 * 109.46544 * 33.09244 * 23 22 2 39 39 H 1.09002 * 109.46907 * 153.08814 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7049 0.0055 5 6 3.5976 -0.6608 0.0006 6 6 4.8028 -1.4982 0.0018 7 8 4.7039 -2.7071 -0.0953 8 7 6.0194 -0.9282 0.1103 9 6 7.2144 -1.7681 0.2224 10 6 8.4359 -0.8920 0.3295 11 6 9.2818 -1.0652 1.3146 12 6 9.1289 -2.2442 2.2407 13 7 10.3950 -2.9779 2.3105 14 6 10.4964 -4.0952 3.0958 15 1 9.6432 -4.4352 3.6639 16 6 11.6960 -4.7907 3.1615 17 7 11.7936 -5.8643 3.9166 18 14 13.1718 -4.2021 2.1793 19 1 13.9648 -3.2512 2.9992 20 1 14.0188 -5.3658 1.8133 21 1 12.7054 -3.5216 0.9446 22 7 2.2864 -1.0961 0.0005 23 6 1.8311 -2.4885 0.0016 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 4.3978 1.3723 0.0111 28 1 6.1036 0.0381 0.1142 29 1 7.2980 -2.4008 -0.6612 30 1 7.1366 -2.3940 1.1114 31 1 8.6115 -0.1184 -0.4034 32 1 10.0890 -0.3631 1.4631 33 1 8.8579 -1.8917 3.2359 34 1 8.3471 -2.9035 1.8634 35 1 11.1612 -2.6727 1.7999 36 1 12.6317 -6.3505 3.9622 37 1 1.6660 -2.8159 1.0280 38 1 0.8997 -2.5666 -0.5591 39 1 2.5890 -3.1190 -0.4633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669001229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:43 Heat of formation + Delta-G solvation = 36.083140 kcal Electronic energy + Delta-G solvation = -20480.234392 eV Core-core repulsion = 17231.047573 eV Total energy + Delta-G solvation = -3249.186819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.31716 -40.49466 -38.07820 -36.30599 -35.17004 -34.43010 -33.10331 -32.56367 -29.39717 -28.14596 -27.59945 -26.23188 -24.04726 -23.84841 -21.61617 -21.04112 -20.45234 -19.44524 -18.31996 -17.59881 -17.24519 -17.13718 -16.61444 -16.27321 -15.90495 -15.49423 -15.05637 -14.96204 -14.78939 -14.31787 -14.25505 -14.20239 -14.09931 -13.76377 -13.54282 -13.27686 -13.12045 -13.05370 -12.74608 -12.21005 -11.88619 -11.67528 -11.55025 -11.08541 -11.02004 -10.78546 -10.45215 -10.04042 -9.50959 -9.27591 -8.05578 -5.40583 0.21006 0.95661 1.37516 1.42253 1.49551 1.52760 1.71763 2.23484 2.38074 2.47309 3.25510 3.38740 3.63450 3.75109 3.83205 3.86769 3.93194 4.10502 4.26235 4.30100 4.34263 4.53812 4.56349 4.69642 4.73038 4.80876 4.88996 5.02741 5.04512 5.15795 5.26719 5.44756 5.55193 5.69357 5.84583 6.02825 6.18079 6.40257 6.84165 7.04483 7.07345 7.78718 8.00243 9.15921 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035700 B = 0.002808 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.115202 B = 9967.764694 C =10419.648874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.229 3.771 3 N -0.525 5.525 4 C 0.047 3.953 5 C -0.116 4.116 6 C 0.590 3.410 7 O -0.585 6.585 8 N -0.694 5.694 9 C 0.141 3.859 10 C -0.155 4.155 11 C -0.136 4.136 12 C 0.161 3.839 13 N -0.753 5.753 14 C -0.243 4.243 15 H 0.052 0.948 16 C -0.066 4.066 17 N -0.984 5.984 18 Si 0.963 3.037 19 H -0.274 1.274 20 H -0.295 1.295 21 H -0.248 1.248 22 N -0.432 5.432 23 C 0.060 3.940 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.206 0.794 28 H 0.419 0.581 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.157 0.843 32 H 0.136 0.864 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.369 0.631 36 H 0.259 0.741 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.853 17.080 -12.561 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.033 4.033 3 N -0.245 5.245 4 C -0.108 4.108 5 C -0.232 4.232 6 C 0.378 3.622 7 O -0.466 6.466 8 N -0.346 5.346 9 C 0.019 3.981 10 C -0.174 4.174 11 C -0.155 4.155 12 C 0.036 3.964 13 N -0.399 5.399 14 C -0.374 4.374 15 H 0.070 0.930 16 C -0.258 4.258 17 N -0.634 5.634 18 Si 0.789 3.211 19 H -0.200 1.200 20 H -0.222 1.222 21 H -0.173 1.173 22 N -0.112 5.112 23 C -0.081 4.081 24 H 0.117 0.883 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.223 0.777 28 H 0.257 0.743 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.175 0.825 32 H 0.154 0.846 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.203 0.797 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.352 16.659 -12.463 30.537 hybrid contribution 1.562 -0.869 -0.005 1.787 sum -20.790 15.790 -12.468 28.932 Atomic orbital electron populations 1.20509 0.81322 1.05854 1.05263 1.24303 0.97575 0.80547 1.00862 1.70162 1.02667 1.29062 1.22570 1.23122 0.95942 0.91045 1.00671 1.20667 0.85512 0.95239 1.21794 1.17037 0.82988 0.86247 0.75964 1.90787 1.87300 1.15965 1.52576 1.45408 1.04247 1.11371 1.73542 1.20460 0.82595 0.92937 1.02151 1.22821 0.94858 1.01451 0.98228 1.23076 1.00642 0.96839 0.94968 1.20069 0.87920 0.91401 0.97021 1.42601 1.11028 1.30818 1.55498 1.19034 0.97290 1.02068 1.18960 0.93024 1.25621 1.01225 0.97579 1.01337 1.69901 1.27090 1.21341 1.45091 0.85296 0.78913 0.77409 0.79481 1.19960 1.22179 1.17265 1.45324 1.04897 1.09373 1.51625 1.22459 1.03128 0.77491 1.05028 0.88312 0.88019 0.88241 0.77717 0.74310 0.91329 0.91834 0.82550 0.84581 0.95351 0.94804 0.79714 0.93183 0.89511 0.85989 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.18 71.24 0.73 0.16 16 2 C 0.23 4.08 7.88 138.20 1.09 5.17 16 3 N -0.53 -11.30 11.20 -187.39 -2.10 -13.40 16 4 C 0.05 0.92 11.37 84.10 0.96 1.88 16 5 C -0.12 -2.65 6.91 40.01 0.28 -2.37 16 6 C 0.59 15.58 7.78 86.47 0.67 16.25 16 7 O -0.58 -19.86 14.81 -4.29 -0.06 -19.93 16 8 N -0.69 -14.63 5.53 -470.74 -2.61 -17.24 16 9 C 0.14 3.59 5.76 85.63 0.49 4.09 16 10 C -0.15 -3.26 9.63 25.65 0.25 -3.01 16 11 C -0.14 -3.63 9.63 25.65 0.25 -3.38 16 12 C 0.16 6.18 6.34 85.63 0.54 6.72 16 13 N -0.75 -35.91 5.40 -347.17 -1.87 -37.79 16 14 C -0.24 -14.32 10.47 84.03 0.88 -13.44 16 15 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 16 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 17 N -0.98 -64.33 13.97 21.65 0.30 -64.03 16 18 Si 0.96 45.65 27.74 68.60 1.90 47.55 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 21 H -0.25 -10.51 6.52 99.48 0.65 -9.86 16 22 N -0.43 -8.65 3.17 -524.95 -1.67 -10.32 16 23 C 0.06 0.92 10.57 127.77 1.35 2.27 16 24 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 0.33 7.09 -2.39 -0.02 0.32 16 27 H 0.21 2.49 7.46 -2.91 -0.02 2.46 16 28 H 0.42 5.75 7.41 -92.71 -0.69 5.07 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 2.01 5.30 -2.39 -0.01 2.00 16 31 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.03 1.37 5.30 -2.38 -0.01 1.36 16 35 H 0.37 16.39 5.52 -92.71 -0.51 15.88 16 36 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.12 0.90 7.11 -2.39 -0.02 0.89 16 39 H 0.08 1.78 6.24 -2.39 -0.01 1.76 16 Total: -1.00 -82.15 329.20 1.67 -80.48 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.17 Total: 23.85 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 7.95 Total: 10.82 kcal Atomic # 7 Polarization: -134.83 SS G_CDS: -7.94 Total: -142.77 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.93 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Total: -82.15 1.67 -80.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669001229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.562 kcal (2) G-P(sol) polarization free energy of solvation -82.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds